RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ANGPTL5Q86XS5 388 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 SIAH3Q8IW03 269 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 PHYHIPLQ96FC7 376 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 C20orf24Q9BUV8 137 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 MMP26Q9NRE1 261 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 ACTL6AO96019 429 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 AADACP22760 399 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 FUT7Q11130 342 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 DHRS13Q6UX07 377 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 MAVSQ7Z434 540 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 NKAIN4Q8IVV8 208 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 OR52N5Q8NH56 324 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 ALG14Q96F25 216 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 SLC35E1Q96K37 410 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 GAL3ST2Q9H3Q3 398 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 DLL4Q9NR61 685 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 TNFSF11O14788 317 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 SELENOFO60613 162 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 CNIH1O95406 144 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 DHODHQ02127 395 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 ETFDHQ16134 617 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 ACER2Q5QJU3 275 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 GLYATL3Q5SZD4 288 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 FAM109BQ6ICB4 259 aaPredicted RBP11.51□□□□□ -0.57
USP40-201ENST00000251722 MFSD4AQ8N468 514 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 YIPF6Q96EC8 236 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 PKIBQ9C010 78 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 LIN7CQ9NUP9 197 aaKnown RBP11.51□□□□□ -0.57
USP40-201ENST00000251722 ANKRD61A6NGH8 418 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 DCTN6O00399 190 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 TLE1Q04724 770 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 ARL16Q0P5N6 197 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 ZNF74Q16587 644 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 Q5PR19 223 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 TOMM20LQ6UXN7 152 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 GCNT2Q8N0V5 402 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 ARHGEF39Q8N4T4 335 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 OR51A4Q8NGJ6 313 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 OR1L3Q8NH93 324 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 ASB5Q8WWX0 329 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 REEP6Q96HR9 211 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 PACRGQ96M98 296 aaPredicted RBP11.51□□□□□ -0.57
USP40-201ENST00000251722 MBOAT4Q96T53 435 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 C5orf49A4QMS7 147 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 STAG3L2P0CL84 134 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 TSPAN7P41732 249 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 SLC25A1P53007 311 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 FOXF1Q12946 379 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 LRRC10Q5BKY1 277 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 OR10X1Q8NGY0 326 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 PIGTQ969N2 578 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 SLC25A46Q96AG3 418 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 TAAR6Q96RI8 345 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 CDCA4Q9BXL8 241 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 WDR54Q9H977 334 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 A0A1B0GUH1 482 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 APEHP13798 732 aaKnown RBP11.5□□□□□ -0.57
USP40-201ENST00000251722 USF1P22415 310 aaPredicted RBP11.5□□□□□ -0.57
USP40-201ENST00000251722 H2BFWTQ7Z2G1 175 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 TGIF2LXQ8IUE1 241 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 OR51F2Q8NH61 342 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 MCHR2Q969V1 340 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 NIPSNAP1Q9BPW8 284 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 ZAR1LA6NP61 321 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 KCNJ3P48549 501 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 B3GNTL1Q67FW5 361 aaPredicted RBP11.5□□□□□ -0.57
USP40-201ENST00000251722 SLC36A1Q7Z2H8 476 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 CCDC190Q86UF4 302 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 CIB3Q96Q77 187 aaPredicted RBP11.5□□□□□ -0.57
USP40-201ENST00000251722 ELOVL1Q9BW60 279 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 DLK1P80370 383 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 B4GALNT1Q00973 533 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 AARDQ4LEZ3 155 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 ZNF385BQ569K4 471 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 GALNT16Q8N428 558 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 OR1S2Q8NGQ3 325 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 VN1R1Q9GZP7 353 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 MED9Q9NWA0 146 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 TAF1P21675 1872 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 KIAA1324LA8MWY0 1029 aaPredicted RBP11.5□□□□□ -0.57
USP40-201ENST00000251722 BCL2L11O43521 198 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 PNLIPRP3Q17RR3 467 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 TMEM92Q6UXU6 159 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 ZNF683Q8IZ20 524 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 OR2Y1Q8NGV0 311 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 SPSB1Q96BD6 273 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 SLC5A6Q9Y289 635 aa11.5□□□□□ -0.57
USP40-201ENST00000251722 A0A1W2PQD3 144 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 LIPAP38571 399 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 PTGFRP43088 359 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 PPP1CAP62136 330 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 TMEM108Q6UXF1 575 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 FOXB1Q99853 325 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 LHX9Q9NQ69 397 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 A0A087WUJ7 227 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 H7BYZ3 331 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 C1orf174Q8IYL3 243 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 CABLES2Q9BTV7 478 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 HEYLQ9NQ87 328 aaPredicted RBP11.49□□□□□ -0.57
USP40-201ENST00000251722 NDUFB11Q9NX14 153 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms