RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ZNF444Q8N0Y2 327 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 ZNF396Q96N95 335 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 FOXP3Q9BZS1 431 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 CIB2O75838 187 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 TUBB4BP68371 445 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 AMPD2Q01433 879 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 DBN1Q16643 649 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 SRGAP1Q7Z6B7 1085 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC125Q86Z20 511 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 FBF1Q8TES7 1133 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 GTF3C6Q969F1 213 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 C22orf23Q9BZE7 217 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PRKRIP1Q9H875 184 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 SCRIBQ14160 1630 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 ARFGEF3Q5TH69 2177 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 A0A1B0GUL7 405 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 DDX5P17844 614 aaKnown RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 IMMTQ16891 758 aaKnown RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 TMEM266Q2M3C6 531 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 AS3MTQ9HBK9 375 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 AKAP7Q9P0M2 348 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 SKIV2LQ15477 1246 aaKnown RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 CADPS2Q86UW7 1296 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 EFCAB13Q8IY85 973 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PDCD7Q8N8D1 485 aaKnown RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 EYA3Q99504 573 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 RUBCNLQ9H714 662 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 JRKLQ9Y4A0 524 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 ARL1P40616 181 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 SLMAPQ14BN4 828 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 EXOC8Q8IYI6 725 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 JPH4Q96JJ6 628 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 TNMDQ9H2S6 317 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 SPECC1L-ADORA2AF8WAN1 911 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 TUBB4AP04350 444 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 MYBL2P10244 700 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 ALDH1B1P30837 517 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PLCB3Q01970 1234 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 KCNH2Q12809 1159 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PRR16Q569H4 304 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 CFAP157Q5JU67 520 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 RILPL2Q969X0 211 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 NNMTP40261 264 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 LACTBP83111 547 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 TBC1D9Q6ZT07 1266 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 IQCA1Q86XH1 822 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 GBP7Q8N8V2 638 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 WHAMMQ8TF30 809 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 HAUS7Q99871 368 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 VPS37BQ9H9H4 285 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 MAD1L1Q9Y6D9 718 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 ESYT2A0FGR8 921 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 CASQ2O14958 399 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 GNAT1P11488 350 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 CCNG2Q16589 344 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PPP1R42Q7Z4L9 355 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 TCP11L2Q8N4U5 519 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.14□□□□□ -1.913e-8■□□□□ 9.3
SCN1A-219ENST00000641575 RASSF4Q9H2L5 321 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 GOPCQ9HD26 462 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 BZW2Q9Y6E2 419 aaKnown RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 FYCO1Q9BQS8 1478 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PPFIA2O75334 1257 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 IFI16Q16666 785 aaKnown RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 TSNAXIP1Q2TAA8 658 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 AP1ARQ63HQ0 302 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 APLFQ8IW19 511 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 MKNK2Q9HBH9 465 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 COPRSQ9NQ92 184 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PLCE1Q9P212 2302 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 SCN10AQ9Y5Y9 1956 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 MEI4A8MW99 385 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 IPO5O00410 1097 aaKnown RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PRPF40AO75400 957 aaKnown RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PPARGP37231 505 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 ANKRD1Q15327 319 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 PHKG1Q16816 387 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 FKBP15Q5T1M5 1219 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 HAUS3Q68CZ6 603 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 ZSCAN30Q86W11 494 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 SMCR8Q8TEV9 937 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-219ENST00000641575 LRRC46Q96FV0 321 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 IKBKGQ9Y6K9 419 aa3.14□□□□□ -1.91
SCN1A-219ENST00000641575 FSD2A1L4K1 749 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 PDCP20941 246 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 KCNA4P22459 653 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CABP4P57796 275 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 UBXN2AP68543 259 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 TYRO3Q06418 890 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ESCO1Q5FWF5 840 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 RSPH14Q9UHP6 348 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC69A6NI79 296 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 SERPINC1P01008 464 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 PRPHP41219 470 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 PTPN14Q15678 1187 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC92Q53HC0 331 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 MIER3Q7Z3K6 550 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 NDUFAF2Q8N183 169 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 MYD88Q99836 296 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CWC25Q9NXE8 425 aaPredicted RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms