RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MVPQ14764 893 aaKnown RBP22.77■■□□□ 1.24
CLN3-259ENST00000637551 PNMA8AQ86V59 439 aaPredicted RBP22.77■■□□□ 1.24
CLN3-259ENST00000637551 VGLL2Q8N8G2 317 aa22.77■■□□□ 1.24
CLN3-259ENST00000637551 ZNF594Q96JF6 807 aaPredicted RBP22.77■■□□□ 1.24
CLN3-259ENST00000637551 HACL1Q9UJ83 578 aa22.77■■□□□ 1.24
CLN3-259ENST00000637551 ADAMTSL1Q8N6G6 1762 aa22.76■■□□□ 1.23
CLN3-259ENST00000637551 G3V3G9 751 aa22.76■■□□□ 1.23
CLN3-259ENST00000637551 LMOD1P29536 600 aaPredicted RBP22.76■■□□□ 1.23
CLN3-259ENST00000637551 DCAF8Q5TAQ9 597 aa22.76■■□□□ 1.23
CLN3-259ENST00000637551 ZNF646O15015 1829 aaPredicted RBP22.75■■□□□ 1.23
CLN3-259ENST00000637551 PDE8BO95263 885 aa22.75■■□□□ 1.23
CLN3-259ENST00000637551 IL15P40933 162 aaPredicted RBP22.75■■□□□ 1.23
CLN3-259ENST00000637551 DBNDD1Q9H9R9 158 aa22.75■■□□□ 1.23
CLN3-259ENST00000637551 MYO3BQ8WXR4 1341 aa22.75■■□□□ 1.23
CLN3-259ENST00000637551 RIMBP2O15034 1052 aa22.74■■□□□ 1.23
CLN3-259ENST00000637551 SRGAP3O43295 1099 aa22.74■■□□□ 1.23
CLN3-259ENST00000637551 VIL1P09327 827 aaKnown RBP22.74■■□□□ 1.23
CLN3-259ENST00000637551 ZNF804AQ7Z570 1209 aa22.74■■□□□ 1.23
CLN3-259ENST00000637551 SCNN1DP51172 638 aa22.73■■□□□ 1.23
CLN3-259ENST00000637551 PUM3Q15397 648 aaKnown RBP22.73■■□□□ 1.23
CLN3-259ENST00000637551 METTL24Q5JXM2 366 aa22.73■■□□□ 1.23
CLN3-259ENST00000637551 AGBL3Q8NEM8 1001 aa22.73■■□□□ 1.23
CLN3-259ENST00000637551 PUS3Q9BZE2 481 aaKnown RBP22.73■■□□□ 1.23
CLN3-259ENST00000637551 TAF1DQ9H5J8 278 aaPredicted RBP22.73■■□□□ 1.23
CLN3-259ENST00000637551 GPRC5DQ9NZD1 345 aa22.73■■□□□ 1.23
CLN3-259ENST00000637551 ARAP2Q8WZ64 1704 aa22.72■■□□□ 1.23
CLN3-259ENST00000637551 IL1R1P14778 569 aa22.72■■□□□ 1.23
CLN3-259ENST00000637551 STRIP1Q5VSL9 837 aa22.72■■□□□ 1.23
CLN3-259ENST00000637551 ATG9AQ7Z3C6 839 aa22.72■■□□□ 1.23
CLN3-259ENST00000637551 PANK1Q8TE04 598 aa22.72■■□□□ 1.23
CLN3-259ENST00000637551 SSH3Q8TE77 659 aa22.72■■□□□ 1.23
CLN3-259ENST00000637551 PRDM10Q9NQV6 1147 aa22.72■■□□□ 1.23
CLN3-259ENST00000637551 CREBZFQ9NS37 354 aa22.72■■□□□ 1.23
CLN3-259ENST00000637551 USP17L3A6NCW0 530 aa22.71■■□□□ 1.23
CLN3-259ENST00000637551 USP17L4A6NCW7 530 aa22.71■■□□□ 1.23
CLN3-259ENST00000637551 FOXN1O15353 648 aa22.71■■□□□ 1.23
CLN3-259ENST00000637551 TAF5LO75529 589 aa22.71■■□□□ 1.23
CLN3-259ENST00000637551 FKBP1AP62942 108 aaKnown RBP22.71■■□□□ 1.23
CLN3-259ENST00000637551 POLA2Q14181 598 aa22.71■■□□□ 1.23
CLN3-259ENST00000637551 LRRC24Q50LG9 513 aa22.71■■□□□ 1.23
CLN3-259ENST00000637551 USP50Q70EL3 339 aaPredicted RBP22.71■■□□□ 1.23
CLN3-259ENST00000637551 USP17L1Q7RTZ2 530 aa22.71■■□□□ 1.23
CLN3-259ENST00000637551 LDHDQ86WU2 507 aa22.71■■□□□ 1.23
CLN3-259ENST00000637551 YTHDC1Q96MU7 727 aaKnown RBP22.71■■□□□ 1.23
CLN3-259ENST00000637551 GJA3Q9Y6H8 435 aa22.71■■□□□ 1.23
CLN3-259ENST00000637551 PSMD14O00487 310 aa22.7■■□□□ 1.22
CLN3-259ENST00000637551 RAD17O75943 681 aa22.7■■□□□ 1.22
CLN3-259ENST00000637551 FGFR2P21802 821 aa22.7■■□□□ 1.22
CLN3-259ENST00000637551 EPHX2P34913 555 aa22.7■■□□□ 1.22
CLN3-259ENST00000637551 ATP8B2P98198 1209 aa22.7■■□□□ 1.22
CLN3-259ENST00000637551 DOK7Q18PE1 504 aa22.7■■□□□ 1.22
CLN3-259ENST00000637551 ADARB2Q9NS39 739 aaKnown RBP22.7■■□□□ 1.22
CLN3-259ENST00000637551 MKRN1Q9UHC7 482 aaKnown RBP22.7■■□□□ 1.22
CLN3-259ENST00000637551 IFIT1P09914 478 aaKnown RBP22.69■■□□□ 1.22
CLN3-259ENST00000637551 LPIN2Q92539 896 aa22.69■■□□□ 1.22
CLN3-259ENST00000637551 GPR101Q96P66 508 aaPredicted RBP22.69■■□□□ 1.22
CLN3-259ENST00000637551 CD209Q9NNX6 404 aa22.69■■□□□ 1.22
CLN3-259ENST00000637551 ZBTB40Q9NUA8 1239 aa22.69■■□□□ 1.22
CLN3-259ENST00000637551 CEP126Q9P2H0 1117 aa22.69■■□□□ 1.22
CLN3-259ENST00000637551 GMPSP49915 693 aaPredicted RBP22.68■■□□□ 1.22
CLN3-259ENST00000637551 RSBN1LQ6PCB5 846 aaPredicted RBP22.68■■□□□ 1.22
CLN3-259ENST00000637551 TXNRD3Q86VQ6 643 aa22.68■■□□□ 1.22
CLN3-259ENST00000637551 HELBQ8NG08 1087 aaPredicted RBP22.68■■□□□ 1.22
CLN3-259ENST00000637551 KLHDC4Q8TBB5 520 aa22.68■■□□□ 1.22
CLN3-259ENST00000637551 ZC3H15Q8WU90 426 aaKnown RBP22.68■■□□□ 1.22
CLN3-259ENST00000637551 CAVIN4Q5BKX8 364 aa22.67■■□□□ 1.22
CLN3-259ENST00000637551 RPAP2Q8IXW5 612 aaPredicted RBP22.67■■□□□ 1.22
CLN3-259ENST00000637551 GMLQ99445 158 aa22.67■■□□□ 1.22
CLN3-259ENST00000637551 AKAP2Q9Y2D5 859 aa22.67■■□□□ 1.22
CLN3-259ENST00000637551 H7C1D1 291 aa22.66■■□□□ 1.22
CLN3-259ENST00000637551 SLC5A1P13866 664 aa22.66■■□□□ 1.22
CLN3-259ENST00000637551 FBXO33Q7Z6M2 555 aa22.66■■□□□ 1.22
CLN3-259ENST00000637551 NOP58Q9Y2X3 529 aaKnown RBP22.66■■□□□ 1.22
CLN3-259ENST00000637551 MYH13Q9UKX3 1938 aa22.65■■□□□ 1.22
CLN3-259ENST00000637551 FAM205AQ6ZU69 1335 aa22.65■■□□□ 1.22
CLN3-259ENST00000637551 PNMA6EA0A0J9YXQ4 647 aa22.65■■□□□ 1.22
CLN3-259ENST00000637551 WTIPA6NIX2 430 aaPredicted RBP22.65■■□□□ 1.22
CLN3-259ENST00000637551 SASH1O94885 1247 aa22.65■■□□□ 1.22
CLN3-259ENST00000637551 KLRK1P26718 216 aa22.65■■□□□ 1.22
CLN3-259ENST00000637551 HIBADHP31937 336 aaKnown RBP22.65■■□□□ 1.22
CLN3-259ENST00000637551 RRP1P56182 461 aaKnown RBP22.65■■□□□ 1.22
CLN3-259ENST00000637551 ZNF280AP59817 542 aaPredicted RBP22.65■■□□□ 1.22
CLN3-259ENST00000637551 DACT2Q5SW24 774 aa22.65■■□□□ 1.22
CLN3-259ENST00000637551 CHADLQ6NUI6 762 aa22.65■■□□□ 1.22
CLN3-259ENST00000637551 CEP85Q6P2H3 762 aa22.65■■□□□ 1.22
CLN3-259ENST00000637551 TDRD7Q8NHU6 1098 aaKnown RBP22.65■■□□□ 1.22
CLN3-259ENST00000637551 FAM84BQ96KN1 310 aaPredicted RBP22.65■■□□□ 1.22
CLN3-259ENST00000637551 COG6Q9Y2V7 657 aa22.65■■□□□ 1.22
CLN3-259ENST00000637551 PLIN1O60240 522 aa22.64■■□□□ 1.21
CLN3-259ENST00000637551 HMMRO75330 724 aa22.64■■□□□ 1.21
CLN3-259ENST00000637551 AAMPQ13685 434 aa22.64■■□□□ 1.21
CLN3-259ENST00000637551 GPR108Q9NPR9 543 aa22.64■■□□□ 1.21
CLN3-259ENST00000637551 PGAP2Q9UHJ9 254 aa22.64■■□□□ 1.21
CLN3-259ENST00000637551 CNOT7Q9UIV1 285 aaKnown RBP22.64■■□□□ 1.21
CLN3-259ENST00000637551 CNTNAP1P78357 1384 aa22.63■■□□□ 1.21
CLN3-259ENST00000637551 EPS15P42566 896 aa22.63■■□□□ 1.21
CLN3-259ENST00000637551 CTCFP49711 727 aaPredicted RBP22.63■■□□□ 1.21
CLN3-259ENST00000637551 HSP90AB4PQ58FF6 505 aa22.63■■□□□ 1.21
CLN3-259ENST00000637551 TTLL5Q6EMB2 1281 aa22.63■■□□□ 1.21
CLN3-259ENST00000637551 SIL1Q9H173 461 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms