RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	TMX4	Q9H1E5	349 aa	Predicted RBP	11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	VPS33B	Q9H267	617 aa		11.68	□□□□□ -0.54
PDLIM5-223	ENST00000627587	CSF1R	P07333	972 aa		11.67	□□□□□ -0.54
PDLIM5-223	ENST00000627587	DEFB115	Q30KQ5	88 aa		11.67	□□□□□ -0.54
PDLIM5-223	ENST00000627587	SUSD4	Q5VX71	490 aa		11.67	□□□□□ -0.54
PDLIM5-223	ENST00000627587	NUTM1	Q86Y26	1132 aa		11.67	□□□□□ -0.54
PDLIM5-223	ENST00000627587	CNTROB	Q8N137	903 aa		11.67	□□□□□ -0.54
PDLIM5-223	ENST00000627587	RBM17	Q96I25	401 aa	Known RBP	11.67	□□□□□ -0.54
PDLIM5-223	ENST00000627587	CRAMP1	Q96RY5	1269 aa		11.67	□□□□□ -0.54
PDLIM5-223	ENST00000627587	COL4A1	P02462	1669 aa		11.67	□□□□□ -0.54
PDLIM5-223	ENST00000627587	ZNF541	Q9H0D2	1346 aa		11.67	□□□□□ -0.54
PDLIM5-223	ENST00000627587	LMOD1	P29536	600 aa	Predicted RBP	11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	VEGFB	P49765	207 aa		11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	OS9	Q13438	667 aa	Predicted RBP	11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	PI4K2B	Q8TCG2	481 aa		11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	SPEF2	Q9C093	1822 aa		11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	RASSF10	A6NK89	507 aa		11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	SDS	P20132	328 aa		11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	ATG9A	Q7Z3C6	839 aa		11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	ERC1	Q8IUD2	1116 aa		11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	EAF2	Q96CJ1	260 aa	Predicted RBP	11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	WBP1L	Q9NX94	342 aa		11.66	□□□□□ -0.54
PDLIM5-223	ENST00000627587	TAF1	P21675	1872 aa		11.65	□□□□□ -0.54
PDLIM5-223	ENST00000627587	FOXN1	O15353	648 aa		11.65	□□□□□ -0.54
PDLIM5-223	ENST00000627587	NTSR2	O95665	410 aa		11.65	□□□□□ -0.54
PDLIM5-223	ENST00000627587	MAP2K1	Q02750	393 aa	Predicted RBP	11.65	□□□□□ -0.54
PDLIM5-223	ENST00000627587	PARP10	Q53GL7	1025 aa		11.65	□□□□□ -0.54
PDLIM5-223	ENST00000627587	TBC1D9	Q6ZT07	1266 aa		11.65	□□□□□ -0.54
PDLIM5-223	ENST00000627587	ZNF594	Q96JF6	807 aa	Predicted RBP	11.65	□□□□□ -0.54
PDLIM5-223	ENST00000627587	TRMT112	Q9UI30	125 aa	Known RBP	11.65	□□□□□ -0.54
PDLIM5-223	ENST00000627587	AOX1	Q06278	1338 aa		11.65	□□□□□ -0.54
PDLIM5-223	ENST00000627587	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.64	□□□□□ -0.55	8e-6	■□□□□ 9
PDLIM5-223	ENST00000627587	OLFM4	Q6UX06	510 aa		11.64	□□□□□ -0.55
PDLIM5-223	ENST00000627587	USP50	Q70EL3	339 aa	Predicted RBP	11.64	□□□□□ -0.55
PDLIM5-223	ENST00000627587	LARGE2	Q8N3Y3	721 aa		11.64	□□□□□ -0.55
PDLIM5-223	ENST00000627587	TTLL11	Q8NHH1	800 aa		11.64	□□□□□ -0.55
PDLIM5-223	ENST00000627587	NLRP3	Q96P20	1036 aa		11.64	□□□□□ -0.55
PDLIM5-223	ENST00000627587	TLR7	Q9NYK1	1049 aa	Known RBP	11.64	□□□□□ -0.55
PDLIM5-223	ENST00000627587		A0A1B0GUL6	1792 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ADAMTSL1	Q8N6G6	1762 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	IRS4	O14654	1257 aa	Predicted RBP	11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	CTSW	P56202	376 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	SUPT20H	Q8NEM7	779 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	CHMP3	Q9Y3E7	222 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	GJA3	Q9Y6H8	435 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	TFCP2	Q12800	502 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	LRRC24	Q50LG9	513 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	SLC10A5	Q5PT55	438 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	MAP1S	Q66K74	1059 aa	Predicted RBP	11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	CLASRP	Q8N2M8	674 aa	Known RBP	11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	PUS3	Q9BZE2	481 aa	Known RBP	11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	GREM2	Q9H772	168 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	SNED1	Q8TER0	1413 aa		11.63	□□□□□ -0.55
PDLIM5-223	ENST00000627587	PPEF1	O14829	653 aa	Predicted RBP	11.62	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ECE1	P42892	770 aa		11.62	□□□□□ -0.55
PDLIM5-223	ENST00000627587	NIM1K	Q8IY84	436 aa		11.62	□□□□□ -0.55
PDLIM5-223	ENST00000627587	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.62	□□□□□ -0.55
PDLIM5-223	ENST00000627587	SH3TC1	Q8TE82	1336 aa		11.62	□□□□□ -0.55
PDLIM5-223	ENST00000627587	WDR33	Q9C0J8	1336 aa	Known RBP	11.62	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ABCC12	Q96J65	1359 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	PDE8A	O60658	829 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	CDC45	O75419	566 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	BBOX1	O75936	387 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	HCLS1	P14317	486 aa	Predicted RBP	11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	AACS	Q86V21	672 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	UTP14A	Q9BVJ6	771 aa	Known RBP	11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ABT1	Q9ULW3	272 aa	Known RBP	11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ZNF609	O15014	1411 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	TTC41P	Q6P2S7	1318 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	EYA2	O00167	538 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	CIAO1	O76071	339 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ANP32A	P39687	249 aa	Known RBP	11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	TNNI3K	Q59H18	835 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	TBC1D32	Q96NH3	1257 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	DBNL	Q9UJU6	430 aa	Known RBP	11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ATP6V0A2	Q9Y487	856 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	FPGT-TNNI3K	V9GXZ4	949 aa		11.61	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ITGA6	P23229	1130 aa		11.6	□□□□□ -0.55
PDLIM5-223	ENST00000627587	BEGAIN	Q9BUH8	593 aa		11.6	□□□□□ -0.55
PDLIM5-223	ENST00000627587	UPF2	Q9HAU5	1272 aa	Known RBP	11.6	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ADARB2	Q9NS39	739 aa	Known RBP	11.6	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ARAP2	Q8WZ64	1704 aa		11.6	□□□□□ -0.55
PDLIM5-223	ENST00000627587	PPIP5K2	O43314	1243 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	SCNN1D	P51172	638 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	LBX1	P52954	281 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	MFAP1	P55081	439 aa	Known RBP	11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	CCDC57	Q2TAC2	916 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	C3orf67	Q6ZVT6	689 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	SP8	Q8IXZ3	490 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ECHDC1	Q9NTX5	307 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	ZNRF3	Q9ULT6	936 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	RIPOR2	Q9Y4F9	1068 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	IFIT2	P09913	472 aa	Known RBP	11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	IL15	P40933	162 aa	Predicted RBP	11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	EPS15	P42566	896 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	IFIT5	Q13325	482 aa	Known RBP	11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	TMC4	Q7Z404	712 aa		11.59	□□□□□ -0.55
PDLIM5-223	ENST00000627587	AKAP11	Q9UKA4	1901 aa		11.58	□□□□□ -0.56

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