RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 MKRN3Q13064 507 aaKnown RBP11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 TRIM28Q13263 835 aaKnown RBP11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 RSBN1LQ6PCB5 846 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 RASAL3Q86YV0 1011 aa11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 FBXW7Q969H0 707 aa11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 CCDC102AQ96A19 550 aa11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 CSRNP1Q96S65 589 aa11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 PODXL2Q9NZ53 605 aa11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 CACNA1AO00555 2505 aa11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 AKAP11Q9UKA4 1901 aa11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 PSME4Q14997 1843 aa11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 UBE2Q2LH0YL09 131 aa11.18□□□□□ -0.62
SHKBP1-220ENST00000599716 PCCAP05165 728 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-220ENST00000599716 KLRK1P26718 216 aa11.18□□□□□ -0.62
SHKBP1-220ENST00000599716 NBPF9Q3BBW0 867 aa11.18□□□□□ -0.62
SHKBP1-220ENST00000599716 CCDC152Q4G0S7 254 aa11.18□□□□□ -0.62
SHKBP1-220ENST00000599716 POTEHQ6S545 545 aa11.18□□□□□ -0.62
SHKBP1-220ENST00000599716 TSR2Q969E8 191 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-220ENST00000599716 CWC25Q9NXE8 425 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-220ENST00000599716 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-220ENST00000599716 MAP3K2Q9Y2U5 619 aa11.18□□□□□ -0.62
SHKBP1-220ENST00000599716 ZNF646O15015 1829 aaPredicted RBP11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 PDE8AO60658 829 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 IGKV5-2P06315 115 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 ZNF280AP59817 542 aaPredicted RBP11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 PRKG1Q13976 671 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 CWF19L2Q2TBE0 894 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 INTS3Q68E01 1043 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 G2E3Q7L622 706 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 TXNRD3Q86VQ6 643 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 ANKRD18AQ8IVF6 992 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 REM2Q8IYK8 340 aaPredicted RBP11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 CCDC191Q8NCU4 936 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 OTUD5Q96G74 571 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 GMLQ99445 158 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 METTL22Q9BUU2 404 aaPredicted RBP11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 GREM2Q9H772 168 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 MYOZ2Q9NPC6 264 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 IFT57Q9NWB7 429 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 FZD1Q9UP38 647 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 PIEZO1Q92508 2521 aa11.17□□□□□ -0.62
SHKBP1-220ENST00000599716 XDHP47989 1333 aa11.16□□□□□ -0.62
SHKBP1-220ENST00000599716 PI4KAP2A4QPH2 592 aa11.16□□□□□ -0.62
SHKBP1-220ENST00000599716 SASH1O94885 1247 aa11.16□□□□□ -0.62
SHKBP1-220ENST00000599716 TBC1D8O95759 1140 aa11.16□□□□□ -0.62
SHKBP1-220ENST00000599716 USP17L8P0C7I0 530 aa11.16□□□□□ -0.62
SHKBP1-220ENST00000599716 CTSWP56202 376 aa11.16□□□□□ -0.62
SHKBP1-220ENST00000599716 CCDC184Q52MB2 194 aa11.16□□□□□ -0.62
SHKBP1-220ENST00000599716 PI4KAP1Q8N8J0 262 aa11.16□□□□□ -0.62
SHKBP1-220ENST00000599716 ZNF296Q8WUU4 475 aaPredicted RBP11.16□□□□□ -0.62
SHKBP1-220ENST00000599716 PRKRIP1Q9H875 184 aaPredicted RBP11.16□□□□□ -0.62
SHKBP1-220ENST00000599716 POTEFA5A3E0 1075 aa11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 USP17L3A6NCW0 530 aa11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 USP17L4A6NCW7 530 aa11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 SNAP23O00161 211 aa11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 GNAI1P63096 354 aa11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 NCBP3Q53F19 620 aaKnown RBP11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 USP17L1Q7RTZ2 530 aa11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 AGBL3Q8NEM8 1001 aa11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 COL25A1Q9BXS0 654 aaPredicted RBP11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 MINPP1Q9UNW1 487 aa11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 MYH3P11055 1940 aa11.15□□□□□ -0.62
SHKBP1-220ENST00000599716 PAPPA2Q9BXP8 1791 aa11.14□□□□□ -0.63
SHKBP1-220ENST00000599716 ATP2B4P23634 1241 aa11.14□□□□□ -0.63
SHKBP1-220ENST00000599716 TTLL12Q14166 644 aaPredicted RBP11.14□□□□□ -0.63
SHKBP1-220ENST00000599716 NOM1Q5C9Z4 860 aaKnown RBP11.14□□□□□ -0.63
SHKBP1-220ENST00000599716 DACT2Q5SW24 774 aa11.14□□□□□ -0.63
SHKBP1-220ENST00000599716 UBE3BQ7Z3V4 1068 aa11.14□□□□□ -0.63
SHKBP1-220ENST00000599716 TTLL11Q8NHH1 800 aa11.14□□□□□ -0.63
SHKBP1-220ENST00000599716 H0YGN5 161 aa11.13□□□□□ -0.63
SHKBP1-220ENST00000599716 CCT4P50991 539 aaKnown RBP11.13□□□□□ -0.63
SHKBP1-220ENST00000599716 CCDC30Q5VVM6 783 aa11.13□□□□□ -0.63
SHKBP1-220ENST00000599716 CHRDL2Q6WN34 429 aa11.13□□□□□ -0.63
SHKBP1-220ENST00000599716 R3HDMLQ9H3Y0 253 aa11.13□□□□□ -0.63
SHKBP1-220ENST00000599716 PCDHAC2Q9Y5I4 1007 aa11.13□□□□□ -0.63
SHKBP1-220ENST00000599716 NEURL1BA8MQ27 555 aa11.12□□□□□ -0.63
SHKBP1-220ENST00000599716 WNT10BO00744 389 aa11.12□□□□□ -0.63
SHKBP1-220ENST00000599716 DDX58O95786 925 aaKnown RBP11.12□□□□□ -0.63
SHKBP1-220ENST00000599716 KSR2Q6VAB6 950 aa11.12□□□□□ -0.63
SHKBP1-220ENST00000599716 PODNQ7Z5L7 613 aa11.12□□□□□ -0.63
SHKBP1-220ENST00000599716 KIAA0825Q8IV33 1275 aa11.12□□□□□ -0.63
SHKBP1-220ENST00000599716 CDC5LQ99459 802 aaKnown RBP11.12□□□□□ -0.63
SHKBP1-220ENST00000599716 JAG2Q9Y219 1238 aa11.12□□□□□ -0.63
SHKBP1-220ENST00000599716 MED23Q9ULK4 1368 aa11.12□□□□□ -0.63
SHKBP1-220ENST00000599716 ZNF609O15014 1411 aa11.11□□□□□ -0.63
SHKBP1-220ENST00000599716 PTPN12Q05209 780 aaKnown RBP11.11□□□□□ -0.63
SHKBP1-220ENST00000599716 HELBQ8NG08 1087 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-220ENST00000599716 BSDC1Q9NW68 430 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-220ENST00000599716 RBM27Q9P2N5 1060 aaKnown RBP11.11□□□□□ -0.63
SHKBP1-220ENST00000599716 SALL2Q9Y467 1007 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-220ENST00000599716 AOX1Q06278 1338 aa11.1□□□□□ -0.63
SHKBP1-220ENST00000599716 TAF5LO75529 589 aa11.1□□□□□ -0.63
SHKBP1-220ENST00000599716 SLC4A2P04920 1241 aa11.1□□□□□ -0.63
SHKBP1-220ENST00000599716 HSP90B1P14625 803 aaKnown RBP11.1□□□□□ -0.63
SHKBP1-220ENST00000599716 ITGA6P23229 1130 aa11.1□□□□□ -0.63
SHKBP1-220ENST00000599716 GTF2IP78347 998 aa11.1□□□□□ -0.63
SHKBP1-220ENST00000599716 PRDM6Q9NQX0 595 aa11.1□□□□□ -0.63
SHKBP1-220ENST00000599716 ZNF804BA4D1E1 1349 aa11.09□□□□□ -0.63
SHKBP1-220ENST00000599716 F8W031 263 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-220ENST00000599716 H7C1W4 665 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms