RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 BOLA2Q9H3K6 86 aa18.81■□□□□ 0.6
UPF1-206ENST00000598471 CDC45O75419 566 aa18.8■□□□□ 0.6
UPF1-206ENST00000598471 ZNF512BQ96KM6 892 aaPredicted RBP18.8■□□□□ 0.6
UPF1-206ENST00000598471 GNL3LQ9NVN8 582 aaKnown RBP18.8■□□□□ 0.6
UPF1-206ENST00000598471 PODXL2Q9NZ53 605 aa18.8■□□□□ 0.6
UPF1-206ENST00000598471 GGA1Q9UJY5 639 aa18.8■□□□□ 0.6
UPF1-206ENST00000598471 NSFL1CQ9UNZ2 370 aaKnown RBP18.8■□□□□ 0.6
UPF1-206ENST00000598471 DLEC1Q9Y238 1755 aa18.8■□□□□ 0.6
UPF1-206ENST00000598471 EIF5BO60841 1220 aaKnown RBP18.79■□□□□ 0.6
UPF1-206ENST00000598471 DPEP1P16444 411 aa18.79■□□□□ 0.6
UPF1-206ENST00000598471 GPSM2P81274 684 aa18.79■□□□□ 0.6
UPF1-206ENST00000598471 CCDC102BQ68D86 513 aa18.79■□□□□ 0.6
UPF1-206ENST00000598471 CC2D2BQ6DHV5 1058 aa18.79■□□□□ 0.6
UPF1-206ENST00000598471 VPS37DQ86XT2 251 aa18.79■□□□□ 0.6
UPF1-206ENST00000598471 TTLL6Q8N841 843 aa18.79■□□□□ 0.6
UPF1-206ENST00000598471 EVI5LQ96CN4 794 aa18.79■□□□□ 0.6
UPF1-206ENST00000598471 HAUS7Q99871 368 aa18.79■□□□□ 0.6
UPF1-206ENST00000598471 SNAP23O00161 211 aa18.78■□□□□ 0.6
UPF1-206ENST00000598471 UFL1O94874 794 aa18.78■□□□□ 0.6
UPF1-206ENST00000598471 ARID4AP29374 1257 aaPredicted RBP18.78■□□□□ 0.6
UPF1-206ENST00000598471 DNAJC2Q99543 621 aaKnown RBP18.78■□□□□ 0.6
UPF1-206ENST00000598471 WWC3Q9ULE0 1092 aa18.78■□□□□ 0.6
UPF1-206ENST00000598471 MAP4K4O95819 1239 aaPredicted RBP18.77■□□□□ 0.6
UPF1-206ENST00000598471 KCNA3P22001 575 aa18.77■□□□□ 0.6
UPF1-206ENST00000598471 PHKA1P46020 1223 aa18.77■□□□□ 0.6
UPF1-206ENST00000598471 C8orf34Q49A92 452 aa18.77■□□□□ 0.6
UPF1-206ENST00000598471 GRIPAP1Q4V328 841 aa18.77■□□□□ 0.6
UPF1-206ENST00000598471 MPNDQ8N594 471 aa18.77■□□□□ 0.6
UPF1-206ENST00000598471 DPP8Q6V1X1 898 aaPredicted RBP18.76■□□□□ 0.59
UPF1-206ENST00000598471 C15orf52Q6ZUT6 534 aaKnown RBP18.76■□□□□ 0.59
UPF1-206ENST00000598471 BACH2Q9BYV9 841 aa18.76■□□□□ 0.59
UPF1-206ENST00000598471 C6orf229H3BNL8 230 aa18.75■□□□□ 0.59
UPF1-206ENST00000598471 HIP1O00291 1037 aa18.75■□□□□ 0.59
UPF1-206ENST00000598471 HIBADHP31937 336 aaKnown RBP18.75■□□□□ 0.59
UPF1-206ENST00000598471 ZNF804AQ7Z570 1209 aa18.75■□□□□ 0.59
UPF1-206ENST00000598471 TBC1D16Q8TBP0 767 aa18.75■□□□□ 0.59
UPF1-206ENST00000598471 FSD1Q9BTV5 496 aa18.75■□□□□ 0.59
UPF1-206ENST00000598471 PAG1Q9NWQ8 432 aa18.75■□□□□ 0.59
UPF1-206ENST00000598471 PIM2Q9P1W9 311 aa18.75■□□□□ 0.59
UPF1-206ENST00000598471 CACNA1SQ13698 1873 aa18.75■□□□□ 0.59
UPF1-206ENST00000598471 RFX7Q2KHR2 1363 aa18.74■□□□□ 0.59
UPF1-206ENST00000598471 MED23Q9ULK4 1368 aa18.74■□□□□ 0.59
UPF1-206ENST00000598471 SEMA3EO15041 775 aa18.74■□□□□ 0.59
UPF1-206ENST00000598471 GYG1P46976 350 aa18.74■□□□□ 0.59
UPF1-206ENST00000598471 BCAMP50895 628 aa18.74■□□□□ 0.59
UPF1-206ENST00000598471 FKBP4Q02790 459 aaKnown RBP eCLIP18.74■□□□□ 0.59
UPF1-206ENST00000598471 LRRFIP1Q32MZ4 808 aaKnown RBP18.74■□□□□ 0.59
UPF1-206ENST00000598471 SOGA3Q5TF21 947 aa18.74■□□□□ 0.59
UPF1-206ENST00000598471 FBXO33Q7Z6M2 555 aa18.74■□□□□ 0.59
UPF1-206ENST00000598471 TICAM2Q86XR7 235 aa18.74■□□□□ 0.59
UPF1-206ENST00000598471 EYA3Q99504 573 aa18.74■□□□□ 0.59
UPF1-206ENST00000598471 GOLIM4O00461 696 aa18.73■□□□□ 0.59
UPF1-206ENST00000598471 MCAMP43121 646 aa18.73■□□□□ 0.59
UPF1-206ENST00000598471 TTF1Q15361 905 aaPredicted RBP18.73■□□□□ 0.59
UPF1-206ENST00000598471 CCDC93Q567U6 631 aa18.73■□□□□ 0.59
UPF1-206ENST00000598471 TBC1D9Q6ZT07 1266 aa18.73■□□□□ 0.59
UPF1-206ENST00000598471 SUPT20HQ8NEM7 779 aa18.73■□□□□ 0.59
UPF1-206ENST00000598471 FAM84BQ96KN1 310 aaPredicted RBP18.73■□□□□ 0.59
UPF1-206ENST00000598471 AK9Q5TCS8 1911 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 SLX4Q8IY92 1834 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 LTBP1Q14766 1721 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 KIAA1551Q9HCM1 1747 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 ZBTB22O15209 634 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 FRAT2O75474 233 aaPredicted RBP18.72■□□□□ 0.59
UPF1-206ENST00000598471 YBX3P16989 372 aaKnown RBP eCLIP18.72■□□□□ 0.59
UPF1-206ENST00000598471 SCARF1Q14162 830 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 GPR162Q16538 588 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 SLC51AQ86UW1 340 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 KBTBD3Q8NAB2 608 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 SPATA5Q8NB90 893 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 C7orf43Q8WVR3 580 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 SNRKQ9NRH2 765 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 DIAPH3Q9NSV4 1193 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 ZNF219Q9P2Y4 722 aaPredicted RBP18.72■□□□□ 0.59
UPF1-206ENST00000598471 DENND2AQ9ULE3 1009 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 IRS2Q9Y4H2 1338 aa18.72■□□□□ 0.59
UPF1-206ENST00000598471 WTIPA6NIX2 430 aaPredicted RBP18.71■□□□□ 0.59
UPF1-206ENST00000598471 KLRK1P26718 216 aa18.71■□□□□ 0.59
UPF1-206ENST00000598471 ZAP70P43403 619 aa18.71■□□□□ 0.59
UPF1-206ENST00000598471 RASGRF1Q13972 1273 aa18.71■□□□□ 0.59
UPF1-206ENST00000598471 DALRD3Q5D0E6 543 aaKnown RBP18.71■□□□□ 0.59
UPF1-206ENST00000598471 RTKN2Q8IZC4 609 aa18.71■□□□□ 0.59
UPF1-206ENST00000598471 ZC3H12CQ9C0D7 883 aaKnown RBP18.71■□□□□ 0.59
UPF1-206ENST00000598471 UPF2Q9HAU5 1272 aaKnown RBP18.71■□□□□ 0.59
UPF1-206ENST00000598471 HMG20BQ9P0W2 317 aa18.71■□□□□ 0.59
UPF1-206ENST00000598471 POLLQ9UGP5 575 aa18.71■□□□□ 0.59
UPF1-206ENST00000598471 PDS5AQ29RF7 1337 aaKnown RBP18.71■□□□□ 0.59
UPF1-206ENST00000598471 C21orf2O43822 256 aa18.7■□□□□ 0.58
UPF1-206ENST00000598471 CHMLP26374 656 aa18.7■□□□□ 0.58
UPF1-206ENST00000598471 OLFM4Q6UX06 510 aa18.7■□□□□ 0.58
UPF1-206ENST00000598471 RUFY2Q8WXA3 655 aa18.7■□□□□ 0.58
UPF1-206ENST00000598471 EDC3Q96F86 508 aaKnown RBP18.7■□□□□ 0.58
UPF1-206ENST00000598471 NDUFB9Q9Y6M9 179 aa18.7■□□□□ 0.58
UPF1-206ENST00000598471 DUOX1Q9NRD9 1551 aa18.69■□□□□ 0.58
UPF1-206ENST00000598471 ZSCAN25Q6NSZ9 544 aa18.69■□□□□ 0.58
UPF1-206ENST00000598471 RTFDC1Q9BY42 306 aaPredicted RBP18.69■□□□□ 0.58
UPF1-206ENST00000598471 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.69■□□□□ 0.582e-6■■■■□ 21.3
UPF1-206ENST00000598471 G3V3G9 751 aa18.68■□□□□ 0.58
UPF1-206ENST00000598471 ZFYP08048 801 aaPredicted RBP18.68■□□□□ 0.58
UPF1-206ENST00000598471 WASHC4Q2M389 1173 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms