RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 PODNQ7Z5L7 613 aa25.2■■□□□ 1.62
PNKP-211ENST00000598020 KDM2BQ8NHM5 1336 aa25.19■■□□□ 1.62
PNKP-211ENST00000598020 SURF6O75683 361 aaKnown RBP25.19■■□□□ 1.62
PNKP-211ENST00000598020 ZNF784Q8NCA9 323 aaPredicted RBP25.19■■□□□ 1.62
PNKP-211ENST00000598020 G3V3G9 751 aa25.18■■□□□ 1.62
PNKP-211ENST00000598020 CXCL9Q07325 125 aa25.18■■□□□ 1.62
PNKP-211ENST00000598020 DCAF8Q5TAQ9 597 aa25.18■■□□□ 1.62
PNKP-211ENST00000598020 GPC2Q8N158 579 aa25.18■■□□□ 1.62
PNKP-211ENST00000598020 LPIN2Q92539 896 aa25.18■■□□□ 1.62
PNKP-211ENST00000598020 SCN9AQ15858 1988 aa25.16■■□□□ 1.62
PNKP-211ENST00000598020 DDNO94850 711 aaPredicted RBP25.16■■□□□ 1.62
PNKP-211ENST00000598020 SASH1O94885 1247 aa25.16■■□□□ 1.62
PNKP-211ENST00000598020 IFIT1P09914 478 aaKnown RBP25.16■■□□□ 1.62
PNKP-211ENST00000598020 TNIP1Q15025 636 aa25.16■■□□□ 1.62
PNKP-211ENST00000598020 CIAPIN1Q6FI81 312 aa25.16■■□□□ 1.62
PNKP-211ENST00000598020 ZNF804AQ7Z570 1209 aa25.16■■□□□ 1.62
PNKP-211ENST00000598020 L3MBTL3Q96JM7 780 aaPredicted RBP25.16■■□□□ 1.62
PNKP-211ENST00000598020 FAM84BQ96KN1 310 aaPredicted RBP25.16■■□□□ 1.62
PNKP-211ENST00000598020 WDR90Q96KV7 1748 aa25.15■■□□□ 1.62
PNKP-211ENST00000598020 PSME4Q14997 1843 aa25.15■■□□□ 1.62
PNKP-211ENST00000598020 SLC5A1P13866 664 aa25.15■■□□□ 1.62
PNKP-211ENST00000598020 TFCP2Q12800 502 aa25.15■■□□□ 1.62
PNKP-211ENST00000598020 HSP90AB4PQ58FF6 505 aa25.15■■□□□ 1.62
PNKP-211ENST00000598020 CD209Q9NNX6 404 aa25.15■■□□□ 1.62
PNKP-211ENST00000598020 AKAP2Q9Y2D5 859 aa25.15■■□□□ 1.62
PNKP-211ENST00000598020 IL1R1P14778 569 aa25.14■■□□□ 1.62
PNKP-211ENST00000598020 ATP2B3Q16720 1220 aa25.14■■□□□ 1.62
PNKP-211ENST00000598020 FBXO33Q7Z6M2 555 aa25.14■■□□□ 1.62
PNKP-211ENST00000598020 GPR108Q9NPR9 543 aa25.14■■□□□ 1.62
PNKP-211ENST00000598020 PCDHB15Q9Y5E8 787 aa25.14■■□□□ 1.62
PNKP-211ENST00000598020 RAD17O75943 681 aa25.13■■□□□ 1.61
PNKP-211ENST00000598020 HIBADHP31937 336 aaKnown RBP25.13■■□□□ 1.61
PNKP-211ENST00000598020 ERC1Q8IUD2 1116 aa25.13■■□□□ 1.61
PNKP-211ENST00000598020 GPBP1L1Q9HC44 474 aaPredicted RBP25.13■■□□□ 1.61
PNKP-211ENST00000598020 KCNQ5Q9NR82 932 aa25.13■■□□□ 1.61
PNKP-211ENST00000598020 VIL1P09327 827 aaKnown RBP25.12■■□□□ 1.61
PNKP-211ENST00000598020 GYG1P46976 350 aa25.12■■□□□ 1.61
PNKP-211ENST00000598020 OS9Q13438 667 aaPredicted RBP25.12■■□□□ 1.61
PNKP-211ENST00000598020 CAVIN4Q5BKX8 364 aa25.12■■□□□ 1.61
PNKP-211ENST00000598020 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.12■■□□□ 1.61
PNKP-211ENST00000598020 PSMD14O00487 310 aa25.11■■□□□ 1.61
PNKP-211ENST00000598020 ZBTB22O15209 634 aa25.11■■□□□ 1.61
PNKP-211ENST00000598020 TDRD7Q8NHU6 1098 aaKnown RBP25.11■■□□□ 1.61
PNKP-211ENST00000598020 EXOC6Q8TAG9 804 aa25.11■■□□□ 1.61
PNKP-211ENST00000598020 ZNF526Q8TF50 670 aaPredicted RBP25.11■■□□□ 1.61
PNKP-211ENST00000598020 EXOC6BQ9Y2D4 811 aa25.11■■□□□ 1.61
PNKP-211ENST00000598020 GJA3Q9Y6H8 435 aa25.11■■□□□ 1.61
PNKP-211ENST00000598020 ZNF609O15014 1411 aa25.11■■□□□ 1.61
PNKP-211ENST00000598020 SCN4AP35499 1836 aa25.1■■□□□ 1.61
PNKP-211ENST00000598020 ARAP2Q8WZ64 1704 aa25.1■■□□□ 1.61
PNKP-211ENST00000598020 A0A1B0GUL7 405 aa25.1■■□□□ 1.61
PNKP-211ENST00000598020 USP17L3A6NCW0 530 aa25.1■■□□□ 1.61
PNKP-211ENST00000598020 USP17L4A6NCW7 530 aa25.1■■□□□ 1.61
PNKP-211ENST00000598020 POTECB2RU33 542 aa25.1■■□□□ 1.61
PNKP-211ENST00000598020 STRIP1Q5VSL9 837 aa25.1■■□□□ 1.61
PNKP-211ENST00000598020 USP17L1Q7RTZ2 530 aa25.1■■□□□ 1.61
PNKP-211ENST00000598020 RAB11FIP3O75154 756 aa25.09■■□□□ 1.61
PNKP-211ENST00000598020 ZNF646O15015 1829 aaPredicted RBP25.08■■□□□ 1.61
PNKP-211ENST00000598020 VEGFAP15692 232 aaPredicted RBP25.08■■□□□ 1.61
PNKP-211ENST00000598020 RPS12P25398 132 aaKnown RBP25.08■■□□□ 1.61
PNKP-211ENST00000598020 BCAMP50895 628 aa25.08■■□□□ 1.61
PNKP-211ENST00000598020 TIMM10P62072 90 aa25.08■■□□□ 1.61
PNKP-211ENST00000598020 VPS37DQ86XT2 251 aa25.08■■□□□ 1.61
PNKP-211ENST00000598020 DPF2Q92785 391 aa25.08■■□□□ 1.61
PNKP-211ENST00000598020 DCTPP1Q9H773 170 aa25.08■■□□□ 1.61
PNKP-211ENST00000598020 RRAGCQ9HB90 399 aa25.08■■□□□ 1.61
PNKP-211ENST00000598020 NMRK2Q9NPI5 230 aa25.08■■□□□ 1.61
PNKP-211ENST00000598020 IQCA1LA6NCM1 817 aa25.07■■□□□ 1.6
PNKP-211ENST00000598020 CENPBP07199 599 aaPredicted RBP25.07■■□□□ 1.6
PNKP-211ENST00000598020 SCNN1DP51172 638 aa25.07■■□□□ 1.6
PNKP-211ENST00000598020 DACT2Q5SW24 774 aa25.07■■□□□ 1.6
PNKP-211ENST00000598020 TTLL5Q6EMB2 1281 aa25.07■■□□□ 1.6
PNKP-211ENST00000598020 RHPN1Q8TCX5 695 aa25.07■■□□□ 1.6
PNKP-211ENST00000598020 GMPSP49915 693 aaPredicted RBP25.06■■□□□ 1.6
PNKP-211ENST00000598020 TNNI3KQ59H18 835 aa25.06■■□□□ 1.6
PNKP-211ENST00000598020 RSBN1LQ6PCB5 846 aaPredicted RBP25.06■■□□□ 1.6
PNKP-211ENST00000598020 AGBL3Q8NEM8 1001 aa25.06■■□□□ 1.6
PNKP-211ENST00000598020 KIF1BPQ96EK5 621 aa25.06■■□□□ 1.6
PNKP-211ENST00000598020 XAGE2Q96GT9 111 aa25.06■■□□□ 1.6
PNKP-211ENST00000598020 FPGT-TNNI3KV9GXZ4 949 aa25.06■■□□□ 1.6
PNKP-211ENST00000598020 FAM205AQ6ZU69 1335 aa25.06■■□□□ 1.6
PNKP-211ENST00000598020 HDAC1Q13547 482 aaPredicted RBP25.05■■□□□ 1.6
PNKP-211ENST00000598020 GMLQ99445 158 aa25.05■■□□□ 1.6
PNKP-211ENST00000598020 GPRC5DQ9NZD1 345 aa25.05■■□□□ 1.6
PNKP-211ENST00000598020 MYO3BQ8WXR4 1341 aa25.05■■□□□ 1.6
PNKP-211ENST00000598020 KIF3CO14782 793 aa25.04■■□□□ 1.6
PNKP-211ENST00000598020 ADORA1P30542 326 aa25.04■■□□□ 1.6
PNKP-211ENST00000598020 FKBP1AP62942 108 aaKnown RBP25.04■■□□□ 1.6
PNKP-211ENST00000598020 GTF2IP78347 998 aa25.04■■□□□ 1.6
PNKP-211ENST00000598020 NEUROD6Q96NK8 337 aa25.04■■□□□ 1.6
PNKP-211ENST00000598020 HACL1Q9UJ83 578 aa25.04■■□□□ 1.6
PNKP-211ENST00000598020 ZBTB12Q9Y330 459 aaPredicted RBP25.04■■□□□ 1.6
PNKP-211ENST00000598020 LMOD1P29536 600 aaPredicted RBP25.03■■□□□ 1.6
PNKP-211ENST00000598020 CCDC102BQ68D86 513 aa25.03■■□□□ 1.6
PNKP-211ENST00000598020 GNL3LQ9NVN8 582 aaKnown RBP25.03■■□□□ 1.6
PNKP-211ENST00000598020 SEMA3EO15041 775 aa25.02■■□□□ 1.6
PNKP-211ENST00000598020 IRX6P78412 446 aaPredicted RBP25.02■■□□□ 1.6
PNKP-211ENST00000598020 EAF2Q96CJ1 260 aaPredicted RBP25.02■■□□□ 1.6
PNKP-211ENST00000598020 TAF1DQ9H5J8 278 aaPredicted RBP25.02■■□□□ 1.6
PNKP-211ENST00000598020 PHKA1P46020 1223 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms