RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SEMA3EO15041 775 aa18.5■□□□□ 0.55
TRIM28-209ENST00000597423 HIBADHP31937 336 aaKnown RBP18.5■□□□□ 0.55
TRIM28-209ENST00000597423 FKBP4Q02790 459 aaKnown RBP eCLIP18.5■□□□□ 0.55
TRIM28-209ENST00000597423 TTF1Q15361 905 aaPredicted RBP18.5■□□□□ 0.55
TRIM28-209ENST00000597423 C8orf34Q49A92 452 aa18.5■□□□□ 0.55
TRIM28-209ENST00000597423 PRPF40BQ6NWY9 871 aaKnown RBP18.5■□□□□ 0.55
TRIM28-209ENST00000597423 DPP8Q6V1X1 898 aaPredicted RBP18.5■□□□□ 0.55
TRIM28-209ENST00000597423 C15orf52Q6ZUT6 534 aaKnown RBP18.5■□□□□ 0.55
TRIM28-209ENST00000597423 DNAJC2Q99543 621 aaKnown RBP18.5■□□□□ 0.55
TRIM28-209ENST00000597423 UPF2Q9HAU5 1272 aaKnown RBP18.5■□□□□ 0.55
TRIM28-209ENST00000597423 PIM2Q9P1W9 311 aa18.5■□□□□ 0.55
TRIM28-209ENST00000597423 A0A0G2JLW4 131 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 C6orf229H3BNL8 230 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 UFL1O94874 794 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 MAP4K4O95819 1239 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-209ENST00000597423 DPEP1P16444 411 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 ARID4AP29374 1257 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-209ENST00000597423 BCAMP50895 628 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 SOGA3Q5TF21 947 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 FBXO33Q7Z6M2 555 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 RUFY2Q8WXA3 655 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 EYA3Q99504 573 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 SGIP1Q9BQI5 828 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 PAG1Q9NWQ8 432 aa18.49■□□□□ 0.55
TRIM28-209ENST00000597423 PPP1R1BQ9UD71 204 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-209ENST00000597423 CASZ1Q86V15 1759 aa18.48■□□□□ 0.55
TRIM28-209ENST00000597423 SNAP23O00161 211 aa18.48■□□□□ 0.55
TRIM28-209ENST00000597423 ZBTB22O15209 634 aa18.48■□□□□ 0.55
TRIM28-209ENST00000597423 FRAT2O75474 233 aaPredicted RBP18.48■□□□□ 0.55
TRIM28-209ENST00000597423 PHKA1P46020 1223 aa18.48■□□□□ 0.55
TRIM28-209ENST00000597423 ZNF804AQ7Z570 1209 aa18.48■□□□□ 0.55
TRIM28-209ENST00000597423 SUPT20HQ8NEM7 779 aa18.48■□□□□ 0.55
TRIM28-209ENST00000597423 TBC1D16Q8TBP0 767 aa18.48■□□□□ 0.55
TRIM28-209ENST00000597423 FAM84BQ96KN1 310 aaPredicted RBP18.48■□□□□ 0.55
TRIM28-209ENST00000597423 FSD1Q9BTV5 496 aa18.48■□□□□ 0.55
TRIM28-209ENST00000597423 DENND2AQ9ULE3 1009 aa18.48■□□□□ 0.55
TRIM28-209ENST00000597423 PTGER2P43116 358 aa18.47■□□□□ 0.55
TRIM28-209ENST00000597423 TBC1D9Q6ZT07 1266 aa18.47■□□□□ 0.55
TRIM28-209ENST00000597423 RTKN2Q8IZC4 609 aa18.47■□□□□ 0.55
TRIM28-209ENST00000597423 SPATA5Q8NB90 893 aa18.47■□□□□ 0.55
TRIM28-209ENST00000597423 ZC3H12CQ9C0D7 883 aaKnown RBP18.47■□□□□ 0.55
TRIM28-209ENST00000597423 DIAPH3Q9NSV4 1193 aa18.47■□□□□ 0.55
TRIM28-209ENST00000597423 ANKRD31Q8N7Z5 1873 aa18.46■□□□□ 0.55
TRIM28-209ENST00000597423 GOLIM4O00461 696 aa18.46■□□□□ 0.55
TRIM28-209ENST00000597423 GYG1P46976 350 aa18.46■□□□□ 0.55
TRIM28-209ENST00000597423 ZSCAN25Q6NSZ9 544 aa18.46■□□□□ 0.55
TRIM28-209ENST00000597423 KBTBD3Q8NAB2 608 aa18.46■□□□□ 0.55
TRIM28-209ENST00000597423 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.46■□□□□ 0.553e-10■■■□□ 15
TRIM28-209ENST00000597423 G3V3G9 751 aa18.45■□□□□ 0.54
TRIM28-209ENST00000597423 CHMLP26374 656 aa18.45■□□□□ 0.54
TRIM28-209ENST00000597423 WASHC4Q2M389 1173 aa18.45■□□□□ 0.54
TRIM28-209ENST00000597423 DALRD3Q5D0E6 543 aaKnown RBP18.45■□□□□ 0.54
TRIM28-209ENST00000597423 DCAF8Q5TAQ9 597 aa18.45■□□□□ 0.54
TRIM28-209ENST00000597423 KLHL34Q8N239 644 aa18.45■□□□□ 0.54
TRIM28-209ENST00000597423 SNRKQ9NRH2 765 aa18.45■□□□□ 0.54
TRIM28-209ENST00000597423 IGSF3O75054 1194 aa18.44■□□□□ 0.54
TRIM28-209ENST00000597423 REC8O95072 547 aa18.44■□□□□ 0.54
TRIM28-209ENST00000597423 ZFYP08048 801 aaPredicted RBP18.44■□□□□ 0.54
TRIM28-209ENST00000597423 KCNA3P22001 575 aa18.44■□□□□ 0.54
TRIM28-209ENST00000597423 MCAMP43121 646 aa18.44■□□□□ 0.54
TRIM28-209ENST00000597423 ZAP70P43403 619 aa18.44■□□□□ 0.54
TRIM28-209ENST00000597423 CCDC93Q567U6 631 aa18.44■□□□□ 0.54
TRIM28-209ENST00000597423 C7orf43Q8WVR3 580 aa18.44■□□□□ 0.54
TRIM28-209ENST00000597423 HMG20BQ9P0W2 317 aa18.44■□□□□ 0.54
TRIM28-209ENST00000597423 POLLQ9UGP5 575 aa18.44■□□□□ 0.54
TRIM28-209ENST00000597423 PDS5AQ29RF7 1337 aaKnown RBP18.43■□□□□ 0.54
TRIM28-209ENST00000597423 RFX7Q2KHR2 1363 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 MED23Q9ULK4 1368 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 TAF1P21675 1872 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 COL4A1P02462 1669 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 WTIPA6NIX2 430 aaPredicted RBP18.42■□□□□ 0.54
TRIM28-209ENST00000597423 C21orf2O43822 256 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 MAP3K12Q12852 859 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 RASGRF1Q13972 1273 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 SCARF1Q14162 830 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 KIAA1211Q6ZU35 1233 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 RTFDC1Q9BY42 306 aaPredicted RBP18.42■□□□□ 0.54
TRIM28-209ENST00000597423 COA1Q9GZY4 146 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 ZNF219Q9P2Y4 722 aaPredicted RBP18.42■□□□□ 0.54
TRIM28-209ENST00000597423 SPEF2Q9C093 1822 aa18.42■□□□□ 0.54
TRIM28-209ENST00000597423 SPTY2D1Q68D10 685 aaPredicted RBP18.41■□□□□ 0.54
TRIM28-209ENST00000597423 TMED8Q6PL24 325 aaPredicted RBP18.41■□□□□ 0.54
TRIM28-209ENST00000597423 ZGPATQ8N5A5 531 aaKnown RBP18.41■□□□□ 0.54
TRIM28-209ENST00000597423 WDR66Q8TBY9 1149 aa18.41■□□□□ 0.54
TRIM28-209ENST00000597423 ESYT1Q9BSJ8 1104 aa18.41■□□□□ 0.54
TRIM28-209ENST00000597423 VPS33BQ9H267 617 aa18.41■□□□□ 0.54
TRIM28-209ENST00000597423 RNF113AO15541 343 aaKnown RBP18.4■□□□□ 0.54
TRIM28-209ENST00000597423 CYP2E1P05181 493 aaPredicted RBP18.4■□□□□ 0.54
TRIM28-209ENST00000597423 MFAP1P55081 439 aaKnown RBP18.4■□□□□ 0.54
TRIM28-209ENST00000597423 TDRD7Q8NHU6 1098 aaKnown RBP18.4■□□□□ 0.54
TRIM28-209ENST00000597423 EDC3Q96F86 508 aaKnown RBP18.4■□□□□ 0.54
TRIM28-209ENST00000597423 CD209Q9NNX6 404 aa18.4■□□□□ 0.54
TRIM28-209ENST00000597423 LRP2BPQ9P2M1 347 aa18.4■□□□□ 0.54
TRIM28-209ENST00000597423 NDUFB9Q9Y6M9 179 aa18.4■□□□□ 0.54
TRIM28-209ENST00000597423 IRS2Q9Y4H2 1338 aa18.4■□□□□ 0.54
TRIM28-209ENST00000597423 RIMBP2O15034 1052 aa18.39■□□□□ 0.53
TRIM28-209ENST00000597423 IL1R1P14778 569 aa18.39■□□□□ 0.53
TRIM28-209ENST00000597423 KLRK1P26718 216 aa18.39■□□□□ 0.53
TRIM28-209ENST00000597423 CWC27Q6UX04 472 aaKnown RBP18.39■□□□□ 0.53
TRIM28-209ENST00000597423 TXNRD3Q86VQ6 643 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms