RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 RTL5Q5HYW3 569 aaPredicted RBP16.52■□□□□ 0.24
SCAF1-202ENST00000595242 SLC17A8Q8NDX2 589 aa16.52■□□□□ 0.24
SCAF1-202ENST00000595242 OTUD5Q96G74 571 aa16.52■□□□□ 0.24
SCAF1-202ENST00000595242 TMEM106CQ9BVX2 250 aa16.52■□□□□ 0.24
SCAF1-202ENST00000595242 GGA1Q9UJY5 639 aa16.52■□□□□ 0.24
SCAF1-202ENST00000595242 USP17L3A6NCW0 530 aa16.51■□□□□ 0.23
SCAF1-202ENST00000595242 USP17L4A6NCW7 530 aa16.51■□□□□ 0.23
SCAF1-202ENST00000595242 MANSC4A6NHS7 340 aaPredicted RBP16.51■□□□□ 0.23
SCAF1-202ENST00000595242 H0YGN5 161 aa16.51■□□□□ 0.23
SCAF1-202ENST00000595242 LDLRAD1Q5T700 205 aa16.51■□□□□ 0.23
SCAF1-202ENST00000595242 USP17L1Q7RTZ2 530 aa16.51■□□□□ 0.23
SCAF1-202ENST00000595242 CD99L2Q8TCZ2 262 aa16.51■□□□□ 0.23
SCAF1-202ENST00000595242 WNT10BO00744 389 aa16.5■□□□□ 0.23
SCAF1-202ENST00000595242 WDR43Q15061 677 aaKnown RBP eCLIP16.5■□□□□ 0.23
SCAF1-202ENST00000595242 NFE2L2Q16236 605 aa16.5■□□□□ 0.23
SCAF1-202ENST00000595242 ANGEL1Q9UNK9 670 aaKnown RBP16.5■□□□□ 0.23
SCAF1-202ENST00000595242 ADAMTS8Q9UP79 889 aa16.5■□□□□ 0.23
SCAF1-202ENST00000595242 CUL9Q8IWT3 2517 aa16.5■□□□□ 0.23
SCAF1-202ENST00000595242 IGF2BP3O00425 579 aaKnown RBP eCLIP16.49■□□□□ 0.23
SCAF1-202ENST00000595242 PODNQ7Z5L7 613 aa16.49■□□□□ 0.23
SCAF1-202ENST00000595242 OGFOD1Q8N543 542 aa16.49■□□□□ 0.23
SCAF1-202ENST00000595242 EFCC1Q9HA90 598 aa16.49■□□□□ 0.23
SCAF1-202ENST00000595242 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.49■□□□□ 0.23
SCAF1-202ENST00000595242 ECM29Q5VYK3 1845 aa16.49■□□□□ 0.23
SCAF1-202ENST00000595242 SPEF2Q9C093 1822 aa16.49■□□□□ 0.23
SCAF1-202ENST00000595242 ATP5J2-PTCD1G3V325 749 aa16.48■□□□□ 0.23
SCAF1-202ENST00000595242 IRS4O14654 1257 aaPredicted RBP16.48■□□□□ 0.23
SCAF1-202ENST00000595242 SLC10A4Q96EP9 437 aa16.48■□□□□ 0.23
SCAF1-202ENST00000595242 ZNF333Q96JL9 665 aa16.48■□□□□ 0.23
SCAF1-202ENST00000595242 PLEKHF1Q96S99 279 aa16.48■□□□□ 0.23
SCAF1-202ENST00000595242 ISCA1Q9BUE6 129 aa16.48■□□□□ 0.23
SCAF1-202ENST00000595242 SEC31BQ9NQW1 1179 aa16.48■□□□□ 0.23
SCAF1-202ENST00000595242 FZD1Q9UP38 647 aa16.48■□□□□ 0.23
SCAF1-202ENST00000595242 ZBTB48P10074 688 aaPredicted RBP16.47■□□□□ 0.23
SCAF1-202ENST00000595242 CRHR2Q13324 411 aa16.47■□□□□ 0.23
SCAF1-202ENST00000595242 CHRDL2Q6WN34 429 aa16.47■□□□□ 0.23
SCAF1-202ENST00000595242 PLBD2Q8NHP8 589 aa16.47■□□□□ 0.23
SCAF1-202ENST00000595242 MXD3Q9BW11 206 aa16.47■□□□□ 0.23
SCAF1-202ENST00000595242 SASH1O94885 1247 aa16.46■□□□□ 0.23
SCAF1-202ENST00000595242 CAP1Q01518 475 aa16.46■□□□□ 0.23
SCAF1-202ENST00000595242 SP3Q02447 781 aa16.46■□□□□ 0.23
SCAF1-202ENST00000595242 ANKRD13DQ6ZTN6 518 aa16.46■□□□□ 0.23
SCAF1-202ENST00000595242 APOBEC3FQ8IUX4 373 aaKnown RBP16.46■□□□□ 0.23
SCAF1-202ENST00000595242 ZNF521Q96K83 1311 aa16.45■□□□□ 0.22
SCAF1-202ENST00000595242 SLC4A8Q2Y0W8 1093 aa16.45■□□□□ 0.22
SCAF1-202ENST00000595242 SLC9C1Q4G0N8 1177 aa16.45■□□□□ 0.22
SCAF1-202ENST00000595242 DACT2Q5SW24 774 aa16.45■□□□□ 0.22
SCAF1-202ENST00000595242 OTUD7BQ6GQQ9 843 aa16.45■□□□□ 0.22
SCAF1-202ENST00000595242 NBPF11Q86T75 865 aa16.45■□□□□ 0.22
SCAF1-202ENST00000595242 WNK4Q96J92 1243 aa16.45■□□□□ 0.22
SCAF1-202ENST00000595242 RBM27Q9P2N5 1060 aaKnown RBP16.45■□□□□ 0.22
SCAF1-202ENST00000595242 XDHP47989 1333 aa16.45■□□□□ 0.22
SCAF1-202ENST00000595242 FBXW7Q969H0 707 aa16.44■□□□□ 0.22
SCAF1-202ENST00000595242 CLMNQ96JQ2 1002 aa16.44■□□□□ 0.22
SCAF1-202ENST00000595242 BABAM1Q9NWV8 329 aa16.44■□□□□ 0.22
SCAF1-202ENST00000595242 CHPF2Q9P2E5 772 aa16.44■□□□□ 0.22
SCAF1-202ENST00000595242 MYH3P11055 1940 aa16.44■□□□□ 0.22
SCAF1-202ENST00000595242 MYO3BQ8WXR4 1341 aa16.44■□□□□ 0.22
SCAF1-202ENST00000595242 ATP2B4P23634 1241 aa16.43■□□□□ 0.22
SCAF1-202ENST00000595242 MAPK8IP3Q9UPT6 1336 aa16.43■□□□□ 0.22
SCAF1-202ENST00000595242 WTIPA6NIX2 430 aaPredicted RBP16.42■□□□□ 0.22
SCAF1-202ENST00000595242 MYCP01106 439 aaPredicted RBP16.42■□□□□ 0.22
SCAF1-202ENST00000595242 MAP3K11Q16584 847 aa16.42■□□□□ 0.22
SCAF1-202ENST00000595242 PTCH2Q9Y6C5 1203 aa16.42■□□□□ 0.22
SCAF1-202ENST00000595242 OTOFQ9HC10 1997 aa16.42■□□□□ 0.22
SCAF1-202ENST00000595242 COL1A1P02452 1464 aaPredicted RBP16.42■□□□□ 0.22
SCAF1-202ENST00000595242 ZSWIM8A7E2V4 1837 aa16.41■□□□□ 0.22
SCAF1-202ENST00000595242 MMP14P50281 582 aa16.41■□□□□ 0.22
SCAF1-202ENST00000595242 TRIM28Q13263 835 aaKnown RBP16.41■□□□□ 0.22
SCAF1-202ENST00000595242 CCDC152Q4G0S7 254 aa16.41■□□□□ 0.22
SCAF1-202ENST00000595242 NCBP3Q53F19 620 aaKnown RBP16.41■□□□□ 0.22
SCAF1-202ENST00000595242 STRIP1Q5VSL9 837 aa16.41■□□□□ 0.22
SCAF1-202ENST00000595242 ZBTB38Q8NAP3 1195 aaPredicted RBP16.41■□□□□ 0.22
SCAF1-202ENST00000595242 CCDC85AQ96PX6 553 aaPredicted RBP16.41■□□□□ 0.22
SCAF1-202ENST00000595242 PTPN18Q99952 460 aa16.41■□□□□ 0.22
SCAF1-202ENST00000595242 DEFB129Q9H1M3 183 aa16.41■□□□□ 0.22
SCAF1-202ENST00000595242 MED23Q9ULK4 1368 aa16.4■□□□□ 0.22
SCAF1-202ENST00000595242 LAMA3Q16787 3333 aa16.4■□□□□ 0.22
SCAF1-202ENST00000595242 PPP1R12BO60237 982 aaPredicted RBP16.4■□□□□ 0.22
SCAF1-202ENST00000595242 HSP90B1P14625 803 aaKnown RBP16.4■□□□□ 0.22
SCAF1-202ENST00000595242 KRT24Q2M2I5 525 aa16.4■□□□□ 0.22
SCAF1-202ENST00000595242 ANKRD18AQ8IVF6 992 aa16.4■□□□□ 0.22
SCAF1-202ENST00000595242 DPF3Q92784 378 aa16.4■□□□□ 0.22
SCAF1-202ENST00000595242 PNNQ9H307 717 aaKnown RBP16.4■□□□□ 0.22
SCAF1-202ENST00000595242 SSC5DA1L4H1 1573 aa16.39■□□□□ 0.21
SCAF1-202ENST00000595242 UNCXA6NJT0 531 aa16.39■□□□□ 0.21
SCAF1-202ENST00000595242 RIPK4P57078 832 aa16.39■□□□□ 0.21
SCAF1-202ENST00000595242 ARHGEF6Q15052 776 aa16.39■□□□□ 0.21
SCAF1-202ENST00000595242 KIAA0825Q8IV33 1275 aa16.39■□□□□ 0.21
SCAF1-202ENST00000595242 TESPA1A2RU30 521 aaPredicted RBP16.38■□□□□ 0.21
SCAF1-202ENST00000595242 GJA5P36382 358 aa16.38■□□□□ 0.21
SCAF1-202ENST00000595242 ZBED3Q96IU2 234 aaPredicted RBP16.38■□□□□ 0.21
SCAF1-202ENST00000595242 DBF4Q9UBU7 674 aaPredicted RBP16.38■□□□□ 0.21
SCAF1-202ENST00000595242 PDE8AO60658 829 aa16.37■□□□□ 0.21
SCAF1-202ENST00000595242 HDGFL1Q5TGJ6 251 aa16.37■□□□□ 0.21
SCAF1-202ENST00000595242 TTLL5Q6EMB2 1281 aa16.37■□□□□ 0.21
SCAF1-202ENST00000595242 COA1Q9GZY4 146 aa16.37■□□□□ 0.21
SCAF1-202ENST00000595242 SUPT20HL1Q3ZLR7 823 aa16.36■□□□□ 0.21
SCAF1-202ENST00000595242 SH3TC2Q8TF17 1288 aa16.36■□□□□ 0.21
SCAF1-202ENST00000595242 IREB2P48200 963 aaKnown RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms