RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 MYH3P11055 1940 aa14.35□□□□□ -0.11
SMAD4-211ENST00000590499 DPYSL4O14531 572 aa14.34□□□□□ -0.11
SMAD4-211ENST00000590499 IRS4O14654 1257 aaPredicted RBP14.34□□□□□ -0.11
SMAD4-211ENST00000590499 PPEF1O14829 653 aaPredicted RBP14.34□□□□□ -0.11
SMAD4-211ENST00000590499 PCCAP05165 728 aaPredicted RBP14.34□□□□□ -0.11
SMAD4-211ENST00000590499 SLFN5Q08AF3 891 aa14.34□□□□□ -0.11
SMAD4-211ENST00000590499 Q6ZNB5 142 aa14.34□□□□□ -0.11
SMAD4-211ENST00000590499 PSMD1Q99460 953 aa14.34□□□□□ -0.11
SMAD4-211ENST00000590499 CWC25Q9NXE8 425 aaPredicted RBP14.34□□□□□ -0.11
SMAD4-211ENST00000590499 COL4A5P29400 1685 aa14.33□□□□□ -0.11
SMAD4-211ENST00000590499 C1QTNF8P60827 252 aa14.33□□□□□ -0.12
SMAD4-211ENST00000590499 GRAPQ13588 217 aa14.33□□□□□ -0.12
SMAD4-211ENST00000590499 RTL5Q5HYW3 569 aaPredicted RBP14.33□□□□□ -0.12
SMAD4-211ENST00000590499 TRMT2AQ8IZ69 625 aaKnown RBP14.33□□□□□ -0.12
SMAD4-211ENST00000590499 GRAPLQ8TC17 118 aaPredicted RBP14.33□□□□□ -0.12
SMAD4-211ENST00000590499 NMRK2Q9NPI5 230 aa14.33□□□□□ -0.12
SMAD4-211ENST00000590499 ATP6V0A2Q9Y487 856 aa14.33□□□□□ -0.12
SMAD4-211ENST00000590499 CEP350Q5VT06 3117 aa14.33□□□□□ -0.12
SMAD4-211ENST00000590499 CDHR2Q9BYE9 1310 aa14.33□□□□□ -0.12
SMAD4-211ENST00000590499 WDR90Q96KV7 1748 aa14.32□□□□□ -0.12
SMAD4-211ENST00000590499 GLTPD2A6NH11 291 aa14.32□□□□□ -0.12
SMAD4-211ENST00000590499 NEURL1BA8MQ27 555 aa14.32□□□□□ -0.12
SMAD4-211ENST00000590499 BBOX1O75936 387 aa14.32□□□□□ -0.12
SMAD4-211ENST00000590499 FKBP5Q13451 457 aaPredicted RBP14.32□□□□□ -0.12
SMAD4-211ENST00000590499 GRIPAP1Q4V328 841 aa14.32□□□□□ -0.12
SMAD4-211ENST00000590499 DDX46Q7L014 1031 aaKnown RBP14.32□□□□□ -0.12
SMAD4-211ENST00000590499 ANKK1Q8NFD2 765 aa14.32□□□□□ -0.12
SMAD4-211ENST00000590499 CDCA7LQ96GN5 454 aa14.32□□□□□ -0.12
SMAD4-211ENST00000590499 ZNF277Q9NRM2 450 aaPredicted RBP14.32□□□□□ -0.12
SMAD4-211ENST00000590499 RABGEF1Q9UJ41 708 aa14.32□□□□□ -0.12
SMAD4-211ENST00000590499 KDM2BQ8NHM5 1336 aa14.32□□□□□ -0.12
SMAD4-211ENST00000590499 LTBP1Q14766 1721 aa14.32□□□□□ -0.12
SMAD4-211ENST00000590499 DUOX1Q9NRD9 1551 aa14.31□□□□□ -0.12
SMAD4-211ENST00000590499 NEXNQ0ZGT2 675 aa14.31□□□□□ -0.12
SMAD4-211ENST00000590499 CWF19L2Q2TBE0 894 aaKnown RBP14.31□□□□□ -0.12
SMAD4-211ENST00000590499 DNAAF4Q8WXU2 420 aa14.31□□□□□ -0.12
SMAD4-211ENST00000590499 IARSP41252 1262 aaKnown RBP14.3□□□□□ -0.12
SMAD4-211ENST00000590499 PROX2Q3B8N5 592 aa14.3□□□□□ -0.12
SMAD4-211ENST00000590499 SP8Q8IXZ3 490 aa14.3□□□□□ -0.12
SMAD4-211ENST00000590499 JARID2Q92833 1246 aaPredicted RBP14.3□□□□□ -0.12
SMAD4-211ENST00000590499 CELF1Q92879 486 aaKnown RBP14.3□□□□□ -0.12
SMAD4-211ENST00000590499 PPP1R3GB7ZBB8 358 aa14.29□□□□□ -0.12
SMAD4-211ENST00000590499 H7C1W4 665 aa14.29□□□□□ -0.12
SMAD4-211ENST00000590499 PDE8AO60658 829 aa14.29□□□□□ -0.12
SMAD4-211ENST00000590499 HSP90B1P14625 803 aaKnown RBP14.29□□□□□ -0.12
SMAD4-211ENST00000590499 BCAMP50895 628 aa14.29□□□□□ -0.12
SMAD4-211ENST00000590499 CASP7P55210 303 aa14.29□□□□□ -0.12
SMAD4-211ENST00000590499 GCKRQ14397 625 aa14.29□□□□□ -0.12
SMAD4-211ENST00000590499 TMC4Q7Z404 712 aa14.29□□□□□ -0.12
SMAD4-211ENST00000590499 LINS1Q8NG48 757 aa14.29□□□□□ -0.12
SMAD4-211ENST00000590499 RTFDC1Q9BY42 306 aaPredicted RBP14.29□□□□□ -0.12
SMAD4-211ENST00000590499 F6X3S4 739 aa14.28□□□□□ -0.12
SMAD4-211ENST00000590499 WDR70Q9NW82 654 aa14.28□□□□□ -0.12
SMAD4-211ENST00000590499 PCDHGA10Q9Y5H3 936 aa14.28□□□□□ -0.12
SMAD4-211ENST00000590499 ZNF541Q9H0D2 1346 aa14.27□□□□□ -0.12
SMAD4-211ENST00000590499 POTECB2RU33 542 aa14.27□□□□□ -0.13
SMAD4-211ENST00000590499 FZD9O00144 591 aa14.27□□□□□ -0.13
SMAD4-211ENST00000590499 BEND3Q5T5X7 828 aa14.27□□□□□ -0.13
SMAD4-211ENST00000590499 RRAGCQ9HB90 399 aa14.27□□□□□ -0.13
SMAD4-211ENST00000590499 SEC31BQ9NQW1 1179 aa14.27□□□□□ -0.13
SMAD4-211ENST00000590499 RTL9Q8NET4 1388 aa14.26□□□□□ -0.13
SMAD4-211ENST00000590499 COL9A1P20849 921 aa14.26□□□□□ -0.13
SMAD4-211ENST00000590499 CTSWP56202 376 aa14.26□□□□□ -0.13
SMAD4-211ENST00000590499 CCDC152Q4G0S7 254 aa14.26□□□□□ -0.13
SMAD4-211ENST00000590499 UBE3BQ7Z3V4 1068 aa14.26□□□□□ -0.13
SMAD4-211ENST00000590499 SSH1Q8WYL5 1049 aa14.26□□□□□ -0.13
SMAD4-211ENST00000590499 PLA2G12BQ9BX93 195 aa14.26□□□□□ -0.13
SMAD4-211ENST00000590499 SCN4AP35499 1836 aa14.26□□□□□ -0.13
SMAD4-211ENST00000590499 SPEF2Q9C093 1822 aa14.25□□□□□ -0.13
SMAD4-211ENST00000590499 SOWAHBA6NEL2 793 aa14.25□□□□□ -0.13
SMAD4-211ENST00000590499 TOMM70O94826 608 aa14.25□□□□□ -0.13
SMAD4-211ENST00000590499 DDNO94850 711 aaPredicted RBP14.25□□□□□ -0.13
SMAD4-211ENST00000590499 RPS8P62241 208 aaKnown RBP14.25□□□□□ -0.13
SMAD4-211ENST00000590499 DPP8Q6V1X1 898 aaPredicted RBP14.25□□□□□ -0.13
SMAD4-211ENST00000590499 MPNDQ8N594 471 aa14.25□□□□□ -0.13
SMAD4-211ENST00000590499 TTLL11Q8NHH1 800 aa14.25□□□□□ -0.13
SMAD4-211ENST00000590499 TMX4Q9H1E5 349 aaPredicted RBP14.25□□□□□ -0.13
SMAD4-211ENST00000590499 VPS33BQ9H267 617 aa14.25□□□□□ -0.13
SMAD4-211ENST00000590499 CT47B1P0C2W7 299 aaPredicted RBP14.24□□□□□ -0.13
SMAD4-211ENST00000590499 VEGFAP15692 232 aaPredicted RBP14.24□□□□□ -0.13
SMAD4-211ENST00000590499 E2F4Q16254 413 aa14.24□□□□□ -0.13
SMAD4-211ENST00000590499 ALDH1L2Q3SY69 923 aa14.24□□□□□ -0.13
SMAD4-211ENST00000590499 SUPT20HQ8NEM7 779 aa14.24□□□□□ -0.13
SMAD4-211ENST00000590499 RBM46Q8TBY0 533 aaKnown RBP14.24□□□□□ -0.13
SMAD4-211ENST00000590499 PTPRCP08575 1304 aa14.23□□□□□ -0.13
SMAD4-211ENST00000590499 PPIP5K2O43314 1243 aa14.23□□□□□ -0.13
SMAD4-211ENST00000590499 KIAA2012Q0VF49 1180 aa14.23□□□□□ -0.13
SMAD4-211ENST00000590499 AOC3Q16853 763 aa14.23□□□□□ -0.13
SMAD4-211ENST00000590499 TYW1BQ6NUM6 668 aa14.23□□□□□ -0.13
SMAD4-211ENST00000590499 LARGE2Q8N3Y3 721 aa14.23□□□□□ -0.13
SMAD4-211ENST00000590499 JDP2Q8WYK2 163 aa14.23□□□□□ -0.13
SMAD4-211ENST00000590499 CCDC85AQ96PX6 553 aaPredicted RBP14.23□□□□□ -0.13
SMAD4-211ENST00000590499 GREM2Q9H772 168 aa14.23□□□□□ -0.13
SMAD4-211ENST00000590499 ALDH1L1O75891 902 aa14.22□□□□□ -0.13
SMAD4-211ENST00000590499 CSF1RP07333 972 aa14.22□□□□□ -0.13
SMAD4-211ENST00000590499 GPSM2P81274 684 aa14.22□□□□□ -0.13
SMAD4-211ENST00000590499 NYAP1Q6ZVC0 841 aa14.22□□□□□ -0.13
SMAD4-211ENST00000590499 LAPTM4BQ86VI4 370 aa14.22□□□□□ -0.13
SMAD4-211ENST00000590499 BCL2L13Q9BXK5 485 aa14.22□□□□□ -0.13
SMAD4-211ENST00000590499 BRPF1P55201 1214 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms