RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 ARHGEF25Q86VW2 580 aa11.34□□□□□ -0.59
SMAD4-209ENST00000589941 AMIGO3Q86WK7 504 aa11.34□□□□□ -0.59
SMAD4-209ENST00000589941 LINC00528Q8N1L1 170 aa11.34□□□□□ -0.59
SMAD4-209ENST00000589941 PURBQ96QR8 312 aaKnown RBP11.34□□□□□ -0.59
SMAD4-209ENST00000589941 ITGB4P16144 1822 aa11.34□□□□□ -0.59
SMAD4-209ENST00000589941 ADH1AP07327 375 aa11.33□□□□□ -0.6
SMAD4-209ENST00000589941 C6orf118Q5T5N4 469 aa11.33□□□□□ -0.6
SMAD4-209ENST00000589941 ZFP42Q96MM3 310 aa11.33□□□□□ -0.6
SMAD4-209ENST00000589941 OSBPL3Q9H4L5 887 aa11.33□□□□□ -0.6
SMAD4-209ENST00000589941 RELBQ01201 579 aa11.32□□□□□ -0.6
SMAD4-209ENST00000589941 SMIM5Q71RC9 77 aa11.32□□□□□ -0.6
SMAD4-209ENST00000589941 C10orf71Q711Q0 1435 aa11.32□□□□□ -0.6
SMAD4-209ENST00000589941 VIRMAQ69YN4 1812 aaKnown RBP11.32□□□□□ -0.6
SMAD4-209ENST00000589941 CCDC88AQ3V6T2 1871 aa11.32□□□□□ -0.6
SMAD4-209ENST00000589941 MAP2P11137 1827 aaKnown RBP11.31□□□□□ -0.6
SMAD4-209ENST00000589941 MAP7D1Q3KQU3 841 aa11.31□□□□□ -0.6
SMAD4-209ENST00000589941 DEPDC4Q8N2C3 294 aa11.31□□□□□ -0.6
SMAD4-209ENST00000589941 NFATC2IPQ8NCF5 419 aa11.31□□□□□ -0.6
SMAD4-209ENST00000589941 ZNF395Q9H8N7 513 aaPredicted RBP11.31□□□□□ -0.6
SMAD4-209ENST00000589941 ANKRD36BQ8N2N9 1353 aa11.3□□□□□ -0.6
SMAD4-209ENST00000589941 BMP2P12643 396 aa11.3□□□□□ -0.6
SMAD4-209ENST00000589941 FSTL1Q12841 308 aa11.3□□□□□ -0.6
SMAD4-209ENST00000589941 TSEN34Q9BSV6 310 aaKnown RBP11.3□□□□□ -0.6
SMAD4-209ENST00000589941 CCNL1Q9UK58 526 aaPredicted RBP11.3□□□□□ -0.6
SMAD4-209ENST00000589941 USP17L5A8MUK1 530 aa11.29□□□□□ -0.6
SMAD4-209ENST00000589941 IL2RBP14784 551 aa11.29□□□□□ -0.6
SMAD4-209ENST00000589941 TRIM26Q12899 539 aaPredicted RBP11.29□□□□□ -0.6
SMAD4-209ENST00000589941 SCARF1Q14162 830 aa11.29□□□□□ -0.6
SMAD4-209ENST00000589941 MPHOSPH9Q99550 1183 aa11.29□□□□□ -0.6
SMAD4-209ENST00000589941 TFIP11Q9UBB9 837 aaKnown RBP11.29□□□□□ -0.6
SMAD4-209ENST00000589941 ATP9BO43861 1147 aa11.28□□□□□ -0.6
SMAD4-209ENST00000589941 PTGIRP43119 386 aa11.28□□□□□ -0.6
SMAD4-209ENST00000589941 USP4Q13107 963 aa11.28□□□□□ -0.6
SMAD4-209ENST00000589941 NCOA4Q13772 614 aa11.28□□□□□ -0.6
SMAD4-209ENST00000589941 SYTL4Q96C24 671 aaPredicted RBP11.28□□□□□ -0.6
SMAD4-209ENST00000589941 C4AP0C0L4 1744 aa11.28□□□□□ -0.6
SMAD4-209ENST00000589941 PALM3A6NDB9 673 aaPredicted RBP11.27□□□□□ -0.61
SMAD4-209ENST00000589941 ATP5J2-PTCD1G3V325 749 aa11.27□□□□□ -0.61
SMAD4-209ENST00000589941 UPP2O95045 317 aa11.27□□□□□ -0.61
SMAD4-209ENST00000589941 STAU1O95793 577 aaKnown RBP11.27□□□□□ -0.61
SMAD4-209ENST00000589941 MYCP01106 439 aaPredicted RBP11.27□□□□□ -0.61
SMAD4-209ENST00000589941 SNRPBP14678 240 aaKnown RBP11.27□□□□□ -0.61
SMAD4-209ENST00000589941 C16orf71Q8IYS4 520 aaPredicted RBP11.27□□□□□ -0.61
SMAD4-209ENST00000589941 TRIM47Q96LD4 638 aa11.27□□□□□ -0.61
SMAD4-209ENST00000589941 PPP1R12CQ9BZL4 782 aa11.27□□□□□ -0.61
SMAD4-209ENST00000589941 NLRP2Q9NX02 1062 aa11.27□□□□□ -0.61
SMAD4-209ENST00000589941 PLEKHG2Q9H7P9 1386 aa11.27□□□□□ -0.61
SMAD4-209ENST00000589941 MEGF6O75095 1541 aa11.26□□□□□ -0.61
SMAD4-209ENST00000589941 USP17L3A6NCW0 530 aa11.26□□□□□ -0.61
SMAD4-209ENST00000589941 USP17L4A6NCW7 530 aa11.26□□□□□ -0.61
SMAD4-209ENST00000589941 FOXN1O15353 648 aa11.26□□□□□ -0.61
SMAD4-209ENST00000589941 SPINT1O43278 529 aa11.26□□□□□ -0.61
SMAD4-209ENST00000589941 ZNF787Q6DD87 383 aa11.26□□□□□ -0.61
SMAD4-209ENST00000589941 USP17L2Q6R6M4 530 aa11.26□□□□□ -0.61
SMAD4-209ENST00000589941 USP17L1Q7RTZ2 530 aa11.26□□□□□ -0.61
SMAD4-209ENST00000589941 CYP2U1Q7Z449 544 aa11.25□□□□□ -0.61
SMAD4-209ENST00000589941 DDX54Q8TDD1 881 aaKnown RBP11.25□□□□□ -0.61
SMAD4-209ENST00000589941 INSM2Q96T92 566 aaPredicted RBP11.25□□□□□ -0.61
SMAD4-209ENST00000589941 C1orf115Q9H7X2 142 aa11.25□□□□□ -0.61
SMAD4-209ENST00000589941 SENP2Q9HC62 589 aa11.25□□□□□ -0.61
SMAD4-209ENST00000589941 MAFBQ9Y5Q3 323 aaPredicted RBP11.25□□□□□ -0.61
SMAD4-209ENST00000589941 SOBPA7XYQ1 873 aa11.24□□□□□ -0.61
SMAD4-209ENST00000589941 CTSOP43234 321 aaPredicted RBP11.24□□□□□ -0.61
SMAD4-209ENST00000589941 SRPK2P78362 688 aaKnown RBP11.24□□□□□ -0.61
SMAD4-209ENST00000589941 EML3Q32P44 896 aa11.24□□□□□ -0.61
SMAD4-209ENST00000589941 C9orf131Q5VYM1 1079 aa11.24□□□□□ -0.61
SMAD4-209ENST00000589941 PLEKHM2Q8IWE5 1019 aa11.24□□□□□ -0.61
SMAD4-209ENST00000589941 RRAGCQ9HB90 399 aa11.24□□□□□ -0.61
SMAD4-209ENST00000589941 RAB6BQ9NRW1 208 aa11.24□□□□□ -0.61
SMAD4-209ENST00000589941 BCS1LQ9Y276 419 aa11.24□□□□□ -0.61
SMAD4-209ENST00000589941 A0A1W2PRU2 124 aa11.23□□□□□ -0.61
SMAD4-209ENST00000589941 ARHGEF10LQ9HCE6 1279 aa11.23□□□□□ -0.61
SMAD4-209ENST00000589941 CABP1Q9NZU7 370 aa11.23□□□□□ -0.61
SMAD4-209ENST00000589941 ARHGAP27Q6ZUM4 889 aa11.22□□□□□ -0.61
SMAD4-209ENST00000589941 TTC21BQ7Z4L5 1316 aa11.22□□□□□ -0.61
SMAD4-209ENST00000589941 SMC1BQ8NDV3 1235 aa11.22□□□□□ -0.61
SMAD4-209ENST00000589941 KIFC2Q96AC6 838 aa11.22□□□□□ -0.61
SMAD4-209ENST00000589941 USP47Q96K76 1375 aa11.22□□□□□ -0.61
SMAD4-209ENST00000589941 PCDHGA11Q9Y5H2 935 aa11.22□□□□□ -0.61
SMAD4-209ENST00000589941 DLEC1Q9Y238 1755 aa11.21□□□□□ -0.61
SMAD4-209ENST00000589941 LZTS3O60299 673 aaPredicted RBP11.21□□□□□ -0.61
SMAD4-209ENST00000589941 LMOD1P29536 600 aaPredicted RBP11.21□□□□□ -0.61
SMAD4-209ENST00000589941 FOXD4L5Q5VV16 416 aaPredicted RBP11.21□□□□□ -0.61
SMAD4-209ENST00000589941 ERICH6Q7L0X2 663 aa11.21□□□□□ -0.61
SMAD4-209ENST00000589941 KCNH5Q8NCM2 988 aa11.21□□□□□ -0.61
SMAD4-209ENST00000589941 ANKRD24Q8TF21 1146 aa11.21□□□□□ -0.61
SMAD4-209ENST00000589941 NOD1Q9Y239 953 aa11.21□□□□□ -0.61
SMAD4-209ENST00000589941 COL5A3P25940 1745 aaPredicted RBP11.21□□□□□ -0.62
SMAD4-209ENST00000589941 PALLDQ8WX93 1383 aa11.2□□□□□ -0.62
SMAD4-209ENST00000589941 A0A0G2JLW4 131 aa11.2□□□□□ -0.62
SMAD4-209ENST00000589941 GNRH1P01148 92 aa11.2□□□□□ -0.62
SMAD4-209ENST00000589941 DCAF11Q8TEB1 546 aa11.2□□□□□ -0.62
SMAD4-209ENST00000589941 ABHD8Q96I13 439 aa11.2□□□□□ -0.62
SMAD4-209ENST00000589941 POLMQ9NP87 494 aaPredicted RBP11.2□□□□□ -0.62
SMAD4-209ENST00000589941 DNMT3LQ9UJW3 386 aa11.2□□□□□ -0.62
SMAD4-209ENST00000589941 PDE4DIPQ5VU43 2346 aa11.19□□□□□ -0.62
SMAD4-209ENST00000589941 FIGNL2A6NMB9 653 aa11.19□□□□□ -0.62
SMAD4-209ENST00000589941 TTLL8A6PVC2 850 aa11.19□□□□□ -0.62
SMAD4-209ENST00000589941 MEN1O00255 615 aa11.19□□□□□ -0.62
SMAD4-209ENST00000589941 IL2RAP01589 272 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms