RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 MYOZ2Q9NPC6 264 aa15.23■□□□□ 0.03
LIG3-209ENST00000586435 MINPP1Q9UNW1 487 aa15.23■□□□□ 0.03
LIG3-209ENST00000586435 A0A1B0GUL6 1792 aa15.23■□□□□ 0.03
LIG3-209ENST00000586435 MYO3BQ8WXR4 1341 aa15.22■□□□□ 0.03
LIG3-209ENST00000586435 CCDC85CA6NKD9 419 aa15.22■□□□□ 0.03
LIG3-209ENST00000586435 H7C1W4 665 aa15.22■□□□□ 0.03
LIG3-209ENST00000586435 CCT4P50991 539 aaKnown RBP15.22■□□□□ 0.03
LIG3-209ENST00000586435 CWF19L2Q2TBE0 894 aaKnown RBP15.22■□□□□ 0.03
LIG3-209ENST00000586435 MMP14P50281 582 aa15.21■□□□□ 0.03
LIG3-209ENST00000586435 KIF23Q02241 960 aaPredicted RBP15.21■□□□□ 0.03
LIG3-209ENST00000586435 CCDC184Q52MB2 194 aa15.21■□□□□ 0.03
LIG3-209ENST00000586435 G2E3Q7L622 706 aa15.21■□□□□ 0.03
LIG3-209ENST00000586435 REM2Q8IYK8 340 aaPredicted RBP15.21■□□□□ 0.03
LIG3-209ENST00000586435 COA1Q9GZY4 146 aa15.21■□□□□ 0.03
LIG3-209ENST00000586435 LEMD3Q9Y2U8 911 aa15.21■□□□□ 0.03
LIG3-209ENST00000586435 SLC4A2P04920 1241 aa15.2■□□□□ 0.02
LIG3-209ENST00000586435 IGHMBP2P38935 993 aaKnown RBP15.2■□□□□ 0.02
LIG3-209ENST00000586435 FLIIQ13045 1269 aa15.2■□□□□ 0.02
LIG3-209ENST00000586435 GCKRQ14397 625 aa15.2■□□□□ 0.02
LIG3-209ENST00000586435 FAM161AQ3B820 660 aa15.2■□□□□ 0.02
LIG3-209ENST00000586435 DACT2Q5SW24 774 aa15.2■□□□□ 0.02
LIG3-209ENST00000586435 STRIP1Q5VSL9 837 aa15.2■□□□□ 0.02
LIG3-209ENST00000586435 UBE3BQ7Z3V4 1068 aa15.2■□□□□ 0.02
LIG3-209ENST00000586435 ECM29Q5VYK3 1845 aa15.2■□□□□ 0.02
LIG3-209ENST00000586435 WTIPA6NIX2 430 aaPredicted RBP15.19■□□□□ 0.02
LIG3-209ENST00000586435 CASP7P55210 303 aa15.19■□□□□ 0.02
LIG3-209ENST00000586435 DGKZQ13574 1117 aa15.19■□□□□ 0.02
LIG3-209ENST00000586435 RASAL3Q86YV0 1011 aa15.19■□□□□ 0.02
LIG3-209ENST00000586435 MYH16Q9H6N6 1097 aa15.19■□□□□ 0.02
LIG3-209ENST00000586435 CSF1RP07333 972 aa15.18■□□□□ 0.02
LIG3-209ENST00000586435 ITGA6P23229 1130 aa15.18■□□□□ 0.02
LIG3-209ENST00000586435 MLLT1Q03111 559 aaPredicted RBP15.18■□□□□ 0.02
LIG3-209ENST00000586435 OGFOD1Q8N543 542 aa15.18■□□□□ 0.02
LIG3-209ENST00000586435 LINS1Q8NG48 757 aa15.18■□□□□ 0.02
LIG3-209ENST00000586435 DNAAF4Q8WXU2 420 aa15.18■□□□□ 0.02
LIG3-209ENST00000586435 CSRNP1Q96S65 589 aa15.18■□□□□ 0.02
LIG3-209ENST00000586435 ANKRD2Q9GZV1 360 aa15.18■□□□□ 0.02
LIG3-209ENST00000586435 RNF186Q9NXI6 227 aa15.18■□□□□ 0.02
LIG3-209ENST00000586435 ZNF804BA4D1E1 1349 aa15.17■□□□□ 0.02
LIG3-209ENST00000586435 FANCIQ9NVI1 1328 aa15.17■□□□□ 0.02
LIG3-209ENST00000586435 WNT10BO00744 389 aa15.17■□□□□ 0.02
LIG3-209ENST00000586435 FKBP5Q13451 457 aaPredicted RBP15.17■□□□□ 0.02
LIG3-209ENST00000586435 NBPF9Q3BBW0 867 aa15.17■□□□□ 0.02
LIG3-209ENST00000586435 TRPA1O75762 1119 aa15.16■□□□□ 0.02
LIG3-209ENST00000586435 TXNRD3Q86VQ6 643 aa15.16■□□□□ 0.02
LIG3-209ENST00000586435 MPHOSPH8Q99549 860 aa15.16■□□□□ 0.02
LIG3-209ENST00000586435 LAMB1P07942 1786 aa15.16■□□□□ 0.02
LIG3-209ENST00000586435 COL1A1P02452 1464 aaPredicted RBP15.15■□□□□ 0.02
LIG3-209ENST00000586435 WDR63Q8IWG1 891 aa15.15■□□□□ 0.02
LIG3-209ENST00000586435 MXD3Q9BW11 206 aa15.15■□□□□ 0.02
LIG3-209ENST00000586435 VAMP4O75379 141 aa15.14■□□□□ 0.01
LIG3-209ENST00000586435 NF2P35240 595 aa15.14■□□□□ 0.01
LIG3-209ENST00000586435 CHRNDQ07001 517 aa15.14■□□□□ 0.01
LIG3-209ENST00000586435 TTLL5Q6EMB2 1281 aa15.14■□□□□ 0.01
LIG3-209ENST00000586435 C15orf52Q6ZUT6 534 aaKnown RBP15.14■□□□□ 0.01
LIG3-209ENST00000586435 FBXW7Q969H0 707 aa15.14■□□□□ 0.01
LIG3-209ENST00000586435 ZBED3Q96IU2 234 aaPredicted RBP15.14■□□□□ 0.01
LIG3-209ENST00000586435 IRS2Q9Y4H2 1338 aa15.14■□□□□ 0.01
LIG3-209ENST00000586435 ANKRD18BA2A2Z9 1011 aa15.13■□□□□ 0.01
LIG3-209ENST00000586435 KLRK1P26718 216 aa15.13■□□□□ 0.01
LIG3-209ENST00000586435 PDE4DIPQ5VU43 2346 aa15.13■□□□□ 0.01
LIG3-209ENST00000586435 APOBEC3FQ8IUX4 373 aaKnown RBP15.13■□□□□ 0.01
LIG3-209ENST00000586435 HDAC9Q9UKV0 1011 aa15.13■□□□□ 0.01
LIG3-209ENST00000586435 SASH1O94885 1247 aa15.12■□□□□ 0.01
LIG3-209ENST00000586435 KCNJ4P48050 445 aa15.12■□□□□ 0.01
LIG3-209ENST00000586435 MOB2Q70IA6 237 aa15.12■□□□□ 0.01
LIG3-209ENST00000586435 MRS2Q9HD23 443 aa15.12■□□□□ 0.01
LIG3-209ENST00000586435 CD209Q9NNX6 404 aa15.12■□□□□ 0.01
LIG3-209ENST00000586435 SCAF8Q9UPN6 1271 aaKnown RBP15.12■□□□□ 0.01
LIG3-209ENST00000586435 UBE2Q2LH0YL09 131 aa15.11■□□□□ 0.01
LIG3-209ENST00000586435 GTF2IP78347 998 aa15.11■□□□□ 0.01
LIG3-209ENST00000586435 FOXO4P98177 505 aa15.11■□□□□ 0.01
LIG3-209ENST00000586435 NOM1Q5C9Z4 860 aaKnown RBP15.11■□□□□ 0.01
LIG3-209ENST00000586435 BEND3Q5T5X7 828 aa15.11■□□□□ 0.01
LIG3-209ENST00000586435 PRAMEF18Q5VWM3 479 aa15.11■□□□□ 0.01
LIG3-209ENST00000586435 CTU1Q7Z7A3 348 aaKnown RBP15.11■□□□□ 0.01
LIG3-209ENST00000586435 KIAA0825Q8IV33 1275 aa15.11■□□□□ 0.01
LIG3-209ENST00000586435 ARAP2Q8WZ64 1704 aa15.11■□□□□ 0.01
LIG3-209ENST00000586435 TM4SF4P48230 202 aa15.1■□□□□ 0.01
LIG3-209ENST00000586435 EXOSC9Q06265 439 aaKnown RBP15.1■□□□□ 0.01
LIG3-209ENST00000586435 IFIT5Q13325 482 aaKnown RBP15.1■□□□□ 0.01
LIG3-209ENST00000586435 TTLL12Q14166 644 aaPredicted RBP15.1■□□□□ 0.01
LIG3-209ENST00000586435 ARMC9Q7Z3E5 817 aa15.1■□□□□ 0.01
LIG3-209ENST00000586435 MTMR14Q8NCE2 650 aa15.1■□□□□ 0.01
LIG3-209ENST00000586435 IL1R1P14778 569 aa15.09■□□□□ 0.01
LIG3-209ENST00000586435 FKBP1AP62942 108 aaKnown RBP15.09■□□□□ 0.01
LIG3-209ENST00000586435 CFHR5Q9BXR6 569 aa15.09■□□□□ 0.01
LIG3-209ENST00000586435 F6X3S4 739 aa15.08■□□□□ 0
LIG3-209ENST00000586435 SREBF2Q12772 1141 aa15.08■□□□□ 0
LIG3-209ENST00000586435 PKN2Q16513 984 aaKnown RBP15.08■□□□□ 0
LIG3-209ENST00000586435 LDLRAD1Q5T700 205 aa15.08■□□□□ 0
LIG3-209ENST00000586435 ZNF804AQ7Z570 1209 aa15.08■□□□□ 0
LIG3-209ENST00000586435 CERS5Q8N5B7 392 aa15.08■□□□□ 0
LIG3-209ENST00000586435 PPP2R3BQ9Y5P8 575 aa15.08■□□□□ 0
LIG3-209ENST00000586435 SNAP23O00161 211 aa15.07■□□□□ 0
LIG3-209ENST00000586435 GRM8O00222 908 aa15.07■□□□□ 0
LIG3-209ENST00000586435 ANP32CO43423 234 aa15.07■□□□□ 0
LIG3-209ENST00000586435 TAF5LO75529 589 aa15.07■□□□□ 0
LIG3-209ENST00000586435 SLC34A2O95436 690 aa15.07■□□□□ 0
LIG3-209ENST00000586435 PTPN12Q05209 780 aaKnown RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms