RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 TSHZ3Q63HK5 1081 aa12.6□□□□□ -0.39
LIG3-203ENST00000585370 SNX21Q969T3 373 aa12.6□□□□□ -0.39
LIG3-203ENST00000585370 CCDC8Q9H0W5 538 aaPredicted RBP12.6□□□□□ -0.39
LIG3-203ENST00000585370 ANKRD36CQ5JPF3 1778 aa12.59□□□□□ -0.39
LIG3-203ENST00000585370 CCDC93Q567U6 631 aa12.59□□□□□ -0.39
LIG3-203ENST00000585370 SUSD4Q5VX71 490 aa12.59□□□□□ -0.39
LIG3-203ENST00000585370 UBN2Q6ZU65 1347 aa12.59□□□□□ -0.39
LIG3-203ENST00000585370 POTEIP0CG38 1075 aa12.58□□□□□ -0.4
LIG3-203ENST00000585370 POTEJP0CG39 1038 aa12.58□□□□□ -0.4
LIG3-203ENST00000585370 ITGA6P23229 1130 aa12.58□□□□□ -0.4
LIG3-203ENST00000585370 RABEP1Q15276 862 aa12.58□□□□□ -0.4
LIG3-203ENST00000585370 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.58□□□□□ -0.4
LIG3-203ENST00000585370 NYXQ9GZU5 481 aa12.58□□□□□ -0.4
LIG3-203ENST00000585370 ZNF277Q9NRM2 450 aaPredicted RBP12.58□□□□□ -0.4
LIG3-203ENST00000585370 RTL9Q8NET4 1388 aa12.57□□□□□ -0.4
LIG3-203ENST00000585370 NTSR2O95665 410 aa12.57□□□□□ -0.4
LIG3-203ENST00000585370 GTF2E1P29083 439 aaPredicted RBP12.57□□□□□ -0.4
LIG3-203ENST00000585370 ALDH1B1P30837 517 aa12.57□□□□□ -0.4
LIG3-203ENST00000585370 ANAPC15P60006 121 aa12.57□□□□□ -0.4
LIG3-203ENST00000585370 FKBP4Q02790 459 aaKnown RBP eCLIP12.57□□□□□ -0.4
LIG3-203ENST00000585370 CCDC152Q4G0S7 254 aa12.57□□□□□ -0.4
LIG3-203ENST00000585370 SLC10A5Q5PT55 438 aa12.57□□□□□ -0.4
LIG3-203ENST00000585370 COL13A1Q5TAT6 717 aaPredicted RBP12.57□□□□□ -0.4
LIG3-203ENST00000585370 LDHAL6AQ6ZMR3 332 aa12.57□□□□□ -0.4
LIG3-203ENST00000585370 KIAA1211Q6ZU35 1233 aa12.57□□□□□ -0.4
LIG3-203ENST00000585370 DIAPH3Q9NSV4 1193 aa12.57□□□□□ -0.4
LIG3-203ENST00000585370 DBNLQ9UJU6 430 aaKnown RBP12.57□□□□□ -0.4
LIG3-203ENST00000585370 RIPOR2Q9Y4F9 1068 aa12.57□□□□□ -0.4
LIG3-203ENST00000585370 SGSM2O43147 1006 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 CRY2Q49AN0 593 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 LRRC24Q50LG9 513 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 CHADLQ6NUI6 762 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 HSCBQ8IWL3 235 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 RTKN2Q8IZC4 609 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 ZNF594Q96JF6 807 aaPredicted RBP12.56□□□□□ -0.4
LIG3-203ENST00000585370 L3MBTL3Q96JM7 780 aaPredicted RBP12.56□□□□□ -0.4
LIG3-203ENST00000585370 NEUROD6Q96NK8 337 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 HAUS7Q99871 368 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 RAD50Q92878 1312 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 RFX7Q2KHR2 1363 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 ABCC12Q96J65 1359 aa12.56□□□□□ -0.4
LIG3-203ENST00000585370 LRRFIP1Q32MZ4 808 aaKnown RBP12.55□□□□□ -0.4
LIG3-203ENST00000585370 CCDC158Q5M9N0 1113 aa12.55□□□□□ -0.4
LIG3-203ENST00000585370 SYNE4Q8N205 404 aa12.55□□□□□ -0.4
LIG3-203ENST00000585370 IL17RAQ96F46 866 aa12.55□□□□□ -0.4
LIG3-203ENST00000585370 KIF2CQ99661 725 aa12.55□□□□□ -0.4
LIG3-203ENST00000585370 DBNDD2Q9BQY9 259 aa12.55□□□□□ -0.4
LIG3-203ENST00000585370 BOLA2Q9H3K6 86 aa12.55□□□□□ -0.4
LIG3-203ENST00000585370 TAF1DQ9H5J8 278 aaPredicted RBP12.55□□□□□ -0.4
LIG3-203ENST00000585370 GREM2Q9H772 168 aa12.55□□□□□ -0.4
LIG3-203ENST00000585370 CNNM1Q9NRU3 951 aa12.55□□□□□ -0.4
LIG3-203ENST00000585370 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.55□□□□□ -0.4
LIG3-203ENST00000585370 MROH5Q6ZUA9 1318 aa12.55□□□□□ -0.4
LIG3-203ENST00000585370 ZNF541Q9H0D2 1346 aa12.55□□□□□ -0.4
LIG3-203ENST00000585370 A0A1B0GUL7 405 aa12.54□□□□□ -0.4
LIG3-203ENST00000585370 IQCA1LA6NCM1 817 aa12.54□□□□□ -0.4
LIG3-203ENST00000585370 IARSP41252 1262 aaKnown RBP12.54□□□□□ -0.4
LIG3-203ENST00000585370 SF3B3Q15393 1217 aaKnown RBP12.54□□□□□ -0.4
LIG3-203ENST00000585370 METTL24Q5JXM2 366 aa12.54□□□□□ -0.4
LIG3-203ENST00000585370 TBC1D2Q9BYX2 928 aa12.54□□□□□ -0.4
LIG3-203ENST00000585370 PUS3Q9BZE2 481 aaKnown RBP12.54□□□□□ -0.4
LIG3-203ENST00000585370 ANO2Q9NQ90 1003 aa12.54□□□□□ -0.4
LIG3-203ENST00000585370 TLR7Q9NYK1 1049 aaKnown RBP12.54□□□□□ -0.4
LIG3-203ENST00000585370 SNED1Q8TER0 1413 aa12.54□□□□□ -0.4
LIG3-203ENST00000585370 FZD9O00144 591 aa12.53□□□□□ -0.4
LIG3-203ENST00000585370 MAP4K4O95819 1239 aaPredicted RBP12.53□□□□□ -0.4
LIG3-203ENST00000585370 HOXA10P31260 410 aaPredicted RBP12.53□□□□□ -0.4
LIG3-203ENST00000585370 IGHMBP2P38935 993 aaKnown RBP12.53□□□□□ -0.4
LIG3-203ENST00000585370 TIMM10P62072 90 aa12.53□□□□□ -0.4
LIG3-203ENST00000585370 GORABQ5T7V8 394 aa12.53□□□□□ -0.4
LIG3-203ENST00000585370 LDHDQ86WU2 507 aa12.53□□□□□ -0.4
LIG3-203ENST00000585370 ZNF512BQ96KM6 892 aaPredicted RBP12.53□□□□□ -0.4
LIG3-203ENST00000585370 CDC5LQ99459 802 aaKnown RBP12.53□□□□□ -0.4
LIG3-203ENST00000585370 MPHOSPH8Q99549 860 aa12.53□□□□□ -0.4
LIG3-203ENST00000585370 FSD1Q9BTV5 496 aa12.53□□□□□ -0.4
LIG3-203ENST00000585370 SNRKQ9NRH2 765 aa12.53□□□□□ -0.4
LIG3-203ENST00000585370 CREBZFQ9NS37 354 aa12.53□□□□□ -0.4
LIG3-203ENST00000585370 ZNF609O15014 1411 aa12.53□□□□□ -0.4
LIG3-203ENST00000585370 ST18O60284 1047 aa12.52□□□□□ -0.41
LIG3-203ENST00000585370 PDE8BO95263 885 aa12.52□□□□□ -0.41
LIG3-203ENST00000585370 HCLS1P14317 486 aaPredicted RBP12.52□□□□□ -0.41
LIG3-203ENST00000585370 ATP2B3Q16720 1220 aa12.52□□□□□ -0.41
LIG3-203ENST00000585370 C3orf67Q6ZVT6 689 aa12.52□□□□□ -0.41
LIG3-203ENST00000585370 SLC51AQ86UW1 340 aa12.52□□□□□ -0.41
LIG3-203ENST00000585370 PSMD1Q99460 953 aa12.52□□□□□ -0.41
LIG3-203ENST00000585370 PASKQ96RG2 1323 aa12.52□□□□□ -0.41
LIG3-203ENST00000585370 SCN4AP35499 1836 aa12.51□□□□□ -0.41
LIG3-203ENST00000585370 MYH3P11055 1940 aa12.51□□□□□ -0.41
LIG3-203ENST00000585370 ITGBL1O95965 494 aaPredicted RBP12.51□□□□□ -0.41
LIG3-203ENST00000585370 IFIT1P09914 478 aaKnown RBP12.51□□□□□ -0.41
LIG3-203ENST00000585370 HSPA1AP0DMV8 641 aaKnown RBP12.51□□□□□ -0.41
LIG3-203ENST00000585370 HSPA1BP0DMV9 641 aaKnown RBP12.51□□□□□ -0.41
LIG3-203ENST00000585370 MCM2P49736 904 aa12.51□□□□□ -0.41
LIG3-203ENST00000585370 TTC39AQ5SRH9 613 aa12.51□□□□□ -0.41
LIG3-203ENST00000585370 CWC27Q6UX04 472 aaKnown RBP12.51□□□□□ -0.41
LIG3-203ENST00000585370 KBTBD3Q8NAB2 608 aa12.51□□□□□ -0.41
LIG3-203ENST00000585370 RPGRQ92834 1020 aaKnown RBP12.51□□□□□ -0.41
LIG3-203ENST00000585370 XAGE2Q96GT9 111 aa12.51□□□□□ -0.41
LIG3-203ENST00000585370 NLRP3Q96P20 1036 aa12.51□□□□□ -0.41
LIG3-203ENST00000585370 CCDC85AQ96PX6 553 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms