RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 NBPF9Q3BBW0 867 aa17.46■□□□□ 0.39
SS18-222ENST00000582792 DACT2Q5SW24 774 aa17.46■□□□□ 0.39
SS18-222ENST00000582792 MOB2Q70IA6 237 aa17.46■□□□□ 0.39
SS18-222ENST00000582792 TTLL11Q8NHH1 800 aa17.46■□□□□ 0.39
SS18-222ENST00000582792 MINPP1Q9UNW1 487 aa17.46■□□□□ 0.39
SS18-222ENST00000582792 SCAF8Q9UPN6 1271 aaKnown RBP17.46■□□□□ 0.39
SS18-222ENST00000582792 SPEF2Q9C093 1822 aa17.46■□□□□ 0.39
SS18-222ENST00000582792 PI4KAP2A4QPH2 592 aa17.45■□□□□ 0.38
SS18-222ENST00000582792 KSR2Q6VAB6 950 aa17.45■□□□□ 0.38
SS18-222ENST00000582792 PI4KAP1Q8N8J0 262 aa17.45■□□□□ 0.38
SS18-222ENST00000582792 GREM2Q9H772 168 aa17.45■□□□□ 0.38
SS18-222ENST00000582792 PRKRIP1Q9H875 184 aaPredicted RBP17.45■□□□□ 0.38
SS18-222ENST00000582792 UBE2Q2LH0YL09 131 aa17.44■□□□□ 0.38
SS18-222ENST00000582792 CCT4P50991 539 aaKnown RBP17.44■□□□□ 0.38
SS18-222ENST00000582792 PRAMEF18Q5VWM3 479 aa17.44■□□□□ 0.38
SS18-222ENST00000582792 OGFOD1Q8N543 542 aa17.44■□□□□ 0.38
SS18-222ENST00000582792 TSPYL6Q8N831 410 aa17.44■□□□□ 0.38
SS18-222ENST00000582792 MYO3BQ8WXR4 1341 aa17.44■□□□□ 0.38
SS18-222ENST00000582792 WNT10BO00744 389 aa17.43■□□□□ 0.38
SS18-222ENST00000582792 NEXNQ0ZGT2 675 aa17.43■□□□□ 0.38
SS18-222ENST00000582792 STRIP1Q5VSL9 837 aa17.43■□□□□ 0.38
SS18-222ENST00000582792 MXD3Q9BW11 206 aa17.43■□□□□ 0.38
SS18-222ENST00000582792 COA1Q9GZY4 146 aa17.43■□□□□ 0.38
SS18-222ENST00000582792 MMP14P50281 582 aa17.42■□□□□ 0.38
SS18-222ENST00000582792 PKN2Q16513 984 aaKnown RBP17.42■□□□□ 0.38
SS18-222ENST00000582792 NEURL1BA8MQ27 555 aa17.41■□□□□ 0.38
SS18-222ENST00000582792 TBC1D8O95759 1140 aa17.41■□□□□ 0.38
SS18-222ENST00000582792 NF2P35240 595 aa17.41■□□□□ 0.38
SS18-222ENST00000582792 TM4SF4P48230 202 aa17.41■□□□□ 0.38
SS18-222ENST00000582792 TTLL12Q14166 644 aaPredicted RBP17.41■□□□□ 0.38
SS18-222ENST00000582792 CWF19L2Q2TBE0 894 aaKnown RBP17.41■□□□□ 0.38
SS18-222ENST00000582792 TXNRD3Q86VQ6 643 aa17.41■□□□□ 0.38
SS18-222ENST00000582792 ZNF296Q8WUU4 475 aaPredicted RBP17.41■□□□□ 0.38
SS18-222ENST00000582792 FBXW7Q969H0 707 aa17.41■□□□□ 0.38
SS18-222ENST00000582792 HPS5Q9UPZ3 1129 aa17.41■□□□□ 0.38
SS18-222ENST00000582792 LEMD3Q9Y2U8 911 aa17.41■□□□□ 0.38
SS18-222ENST00000582792 H7C1W4 665 aa17.4■□□□□ 0.38
SS18-222ENST00000582792 IGHMBP2P38935 993 aaKnown RBP17.4■□□□□ 0.38
SS18-222ENST00000582792 STK31Q9BXU1 1019 aa17.4■□□□□ 0.38
SS18-222ENST00000582792 HDAC9Q9UKV0 1011 aa17.4■□□□□ 0.38
SS18-222ENST00000582792 SASH1O94885 1247 aa17.39■□□□□ 0.37
SS18-222ENST00000582792 NOM1Q5C9Z4 860 aaKnown RBP17.39■□□□□ 0.37
SS18-222ENST00000582792 TTLL5Q6EMB2 1281 aa17.39■□□□□ 0.37
SS18-222ENST00000582792 UBE3BQ7Z3V4 1068 aa17.39■□□□□ 0.37
SS18-222ENST00000582792 TSR2Q969E8 191 aaKnown RBP17.39■□□□□ 0.37
SS18-222ENST00000582792 PCDH10Q9P2E7 1040 aa17.39■□□□□ 0.37
SS18-222ENST00000582792 ZNF804BA4D1E1 1349 aa17.39■□□□□ 0.37
SS18-222ENST00000582792 SREBF2Q12772 1141 aa17.38■□□□□ 0.37
SS18-222ENST00000582792 APOBEC3FQ8IUX4 373 aaKnown RBP17.38■□□□□ 0.37
SS18-222ENST00000582792 PLA2G12BQ9BX93 195 aa17.38■□□□□ 0.37
SS18-222ENST00000582792 ANKRD2Q9GZV1 360 aa17.38■□□□□ 0.37
SS18-222ENST00000582792 GPR25O00155 361 aa17.37■□□□□ 0.37
SS18-222ENST00000582792 ITGA6P23229 1130 aa17.37■□□□□ 0.37
SS18-222ENST00000582792 KLRK1P26718 216 aa17.37■□□□□ 0.37
SS18-222ENST00000582792 PTPN12Q05209 780 aaKnown RBP17.37■□□□□ 0.37
SS18-222ENST00000582792 MKRN3Q13064 507 aaKnown RBP17.37■□□□□ 0.37
SS18-222ENST00000582792 G2E3Q7L622 706 aa17.37■□□□□ 0.37
SS18-222ENST00000582792 ARMC9Q7Z3E5 817 aa17.37■□□□□ 0.37
SS18-222ENST00000582792 ZBED3Q96IU2 234 aaPredicted RBP17.37■□□□□ 0.37
SS18-222ENST00000582792 CFHR5Q9BXR6 569 aa17.37■□□□□ 0.37
SS18-222ENST00000582792 HTTP42858 3142 aa17.36■□□□□ 0.37
SS18-222ENST00000582792 GTF2IP78347 998 aa17.36■□□□□ 0.37
SS18-222ENST00000582792 GCKRQ14397 625 aa17.36■□□□□ 0.37
SS18-222ENST00000582792 TWISTNBQ3B726 338 aaPredicted RBP17.36■□□□□ 0.37
SS18-222ENST00000582792 LDLRAD1Q5T700 205 aa17.36■□□□□ 0.37
SS18-222ENST00000582792 KIAA0825Q8IV33 1275 aa17.36■□□□□ 0.37
SS18-222ENST00000582792 MPHOSPH8Q99549 860 aa17.36■□□□□ 0.37
SS18-222ENST00000582792 COL1A1P02452 1464 aaPredicted RBP17.36■□□□□ 0.37
SS18-222ENST00000582792 SLC4A2P04920 1241 aa17.35■□□□□ 0.37
SS18-222ENST00000582792 CSF1RP07333 972 aa17.35■□□□□ 0.37
SS18-222ENST00000582792 CASP7P55210 303 aa17.35■□□□□ 0.37
SS18-222ENST00000582792 PRPF38BQ5VTL8 546 aaKnown RBP17.35■□□□□ 0.37
SS18-222ENST00000582792 KCNJ4P48050 445 aa17.34■□□□□ 0.37
SS18-222ENST00000582792 PRKG1Q13976 671 aa17.34■□□□□ 0.37
SS18-222ENST00000582792 CCDC27Q2M243 656 aa17.34■□□□□ 0.37
SS18-222ENST00000582792 SPRYD7Q5W111 196 aa17.34■□□□□ 0.37
SS18-222ENST00000582792 FBXO46Q6PJ61 603 aaPredicted RBP17.34■□□□□ 0.37
SS18-222ENST00000582792 ANGEL1Q9UNK9 670 aaKnown RBP17.34■□□□□ 0.37
SS18-222ENST00000582792 FKTNO75072 461 aa17.33■□□□□ 0.36
SS18-222ENST00000582792 CHRNDQ07001 517 aa17.33■□□□□ 0.36
SS18-222ENST00000582792 FLIIQ13045 1269 aa17.33■□□□□ 0.36
SS18-222ENST00000582792 MYH16Q9H6N6 1097 aa17.33■□□□□ 0.36
SS18-222ENST00000582792 CD209Q9NNX6 404 aa17.33■□□□□ 0.36
SS18-222ENST00000582792 IRS2Q9Y4H2 1338 aa17.32■□□□□ 0.36
SS18-222ENST00000582792 DLGAP5Q15398 846 aa17.32■□□□□ 0.36
SS18-222ENST00000582792 WWC1Q8IX03 1113 aa17.32■□□□□ 0.36
SS18-222ENST00000582792 MTMR14Q8NCE2 650 aa17.32■□□□□ 0.36
SS18-222ENST00000582792 LINS1Q8NG48 757 aa17.32■□□□□ 0.36
SS18-222ENST00000582792 DNAAF4Q8WXU2 420 aa17.32■□□□□ 0.36
SS18-222ENST00000582792 DEFB129Q9H1M3 183 aa17.32■□□□□ 0.36
SS18-222ENST00000582792 R3HDMLQ9H3Y0 253 aa17.32■□□□□ 0.36
SS18-222ENST00000582792 ECM29Q5VYK3 1845 aa17.31■□□□□ 0.36
SS18-222ENST00000582792 IL16Q14005 1332 aa17.31■□□□□ 0.36
SS18-222ENST00000582792 ALDH1A1P00352 501 aa17.31■□□□□ 0.36
SS18-222ENST00000582792 FKBP5Q13451 457 aaPredicted RBP17.31■□□□□ 0.36
SS18-222ENST00000582792 MAP3K11Q16584 847 aa17.31■□□□□ 0.36
SS18-222ENST00000582792 C15orf52Q6ZUT6 534 aaKnown RBP17.31■□□□□ 0.36
SS18-222ENST00000582792 CERS5Q8N5B7 392 aa17.31■□□□□ 0.36
SS18-222ENST00000582792 FZD1Q9UP38 647 aa17.31■□□□□ 0.36
SS18-222ENST00000582792 PPP2R3BQ9Y5P8 575 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms