RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 MRPS27Q92552 414 aaKnown RBP14.27□□□□□ -0.13
SHMT1-208ENST00000582352 DSCC1Q9BVC3 393 aa14.27□□□□□ -0.13
SHMT1-208ENST00000582352 NCOA5Q9HCD5 579 aaKnown RBP14.27□□□□□ -0.13
SHMT1-208ENST00000582352 A0A087WWV3 80 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 GOLIM4O00461 696 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 CCZ1BP86790 482 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 CCZ1P86791 482 aaPredicted RBP14.26□□□□□ -0.13
SHMT1-208ENST00000582352 GUCY1B3Q02153 619 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 RAPGEF4Q8WZA2 1011 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 FBXW7Q969H0 707 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 CHMP4CQ96CF2 233 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 HELLSQ9NRZ9 838 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 PAG1Q9NWQ8 432 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 SCN11AQ9UI33 1791 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 SALL1Q9NSC2 1324 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 A0A087WZG4 1122 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 SDF4Q9BRK5 362 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 CARMIL3Q8ND23 1372 aa14.26□□□□□ -0.13
SHMT1-208ENST00000582352 KDM6AO15550 1401 aaPredicted RBP14.25□□□□□ -0.13
SHMT1-208ENST00000582352 PPFIA3O75145 1194 aa14.25□□□□□ -0.13
SHMT1-208ENST00000582352 TTC5Q8N0Z6 440 aa14.25□□□□□ -0.13
SHMT1-208ENST00000582352 NFATC2IPQ8NCF5 419 aa14.25□□□□□ -0.13
SHMT1-208ENST00000582352 ZNF496Q96IT1 587 aaPredicted RBP14.25□□□□□ -0.13
SHMT1-208ENST00000582352 AGXT2Q9BYV1 514 aa14.25□□□□□ -0.13
SHMT1-208ENST00000582352 TRMT1Q9NXH9 659 aaKnown RBP14.25□□□□□ -0.13
SHMT1-208ENST00000582352 DDX41Q9UJV9 622 aaKnown RBP14.25□□□□□ -0.13
SHMT1-208ENST00000582352 AXIN2Q9Y2T1 843 aa14.25□□□□□ -0.13
SHMT1-208ENST00000582352 KIF2AO00139 706 aaPredicted RBP14.25□□□□□ -0.13
SHMT1-208ENST00000582352 PIP4K2AP48426 406 aaPredicted RBP14.25□□□□□ -0.13
SHMT1-208ENST00000582352 CCAR2Q8N163 923 aaKnown RBP14.25□□□□□ -0.13
SHMT1-208ENST00000582352 KIF18AQ8NI77 898 aa14.25□□□□□ -0.13
SHMT1-208ENST00000582352 NEUROD6Q96NK8 337 aa14.25□□□□□ -0.13
SHMT1-208ENST00000582352 BCL11BQ9C0K0 894 aaPredicted RBP14.25□□□□□ -0.13
SHMT1-208ENST00000582352 ZNF215Q9UL58 517 aaPredicted RBP14.25□□□□□ -0.13
SHMT1-208ENST00000582352 ARFGEF2Q9Y6D5 1785 aa14.25□□□□□ -0.13
SHMT1-208ENST00000582352 E7EWF7 191 aa14.24□□□□□ -0.13
SHMT1-208ENST00000582352 ATP5J2-PTCD1G3V325 749 aa14.24□□□□□ -0.13
SHMT1-208ENST00000582352 PTCD1O75127 700 aaKnown RBP14.24□□□□□ -0.13
SHMT1-208ENST00000582352 EXOSC10Q01780 885 aaKnown RBP14.24□□□□□ -0.13
SHMT1-208ENST00000582352 ZNF397Q8NF99 534 aaPredicted RBP14.24□□□□□ -0.13
SHMT1-208ENST00000582352 ERCC4Q92889 916 aaPredicted RBP14.24□□□□□ -0.13
SHMT1-208ENST00000582352 ERBB3P21860 1342 aa14.24□□□□□ -0.13
SHMT1-208ENST00000582352 ABCC6O95255 1503 aa14.24□□□□□ -0.13
SHMT1-208ENST00000582352 SNRPA1P09661 255 aaKnown RBP14.24□□□□□ -0.13
SHMT1-208ENST00000582352 ZNF274Q96GC6 653 aaPredicted RBP14.24□□□□□ -0.13
SHMT1-208ENST00000582352 PDIA3P30101 505 aaKnown RBP14.23□□□□□ -0.13
SHMT1-208ENST00000582352 GABPB1Q06547 395 aaPredicted RBP14.23□□□□□ -0.13
SHMT1-208ENST00000582352 SF3A1Q15459 793 aaKnown RBP14.23□□□□□ -0.13
SHMT1-208ENST00000582352 ILDR1Q86SU0 546 aaPredicted RBP14.23□□□□□ -0.13
SHMT1-208ENST00000582352 FMR1NBQ8N0W7 255 aaPredicted RBP14.23□□□□□ -0.13
SHMT1-208ENST00000582352 ERO1AQ96HE7 468 aa14.23□□□□□ -0.13
SHMT1-208ENST00000582352 PCDHA7Q9UN72 937 aa14.23□□□□□ -0.13
SHMT1-208ENST00000582352 RGPD5Q99666 1765 aa14.23□□□□□ -0.13
SHMT1-208ENST00000582352 KIF1AQ12756 1690 aa14.23□□□□□ -0.13
SHMT1-208ENST00000582352 ZMYM1Q5SVZ6 1142 aa14.23□□□□□ -0.13
SHMT1-208ENST00000582352 ADALQ6DHV7 355 aa14.23□□□□□ -0.13
SHMT1-208ENST00000582352 LMBR1LQ6UX01 489 aa14.23□□□□□ -0.13
SHMT1-208ENST00000582352 IMPACTQ9P2X3 320 aa14.23□□□□□ -0.13
SHMT1-208ENST00000582352 HSPD1P10809 573 aaKnown RBP14.22□□□□□ -0.13
SHMT1-208ENST00000582352 STK38Q15208 465 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 SLFNL1Q499Z3 407 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 ZNF771Q7L3S4 317 aaPredicted RBP14.22□□□□□ -0.13
SHMT1-208ENST00000582352 CHST3Q7LGC8 479 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 LRP10Q7Z4F1 713 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 RTEL1Q9NZ71 1219 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.22□□□□□ -0.13
SHMT1-208ENST00000582352 V9GYY5 206 aaPredicted RBP14.22□□□□□ -0.13
SHMT1-208ENST00000582352 A0A1B0GVL5 298 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 A0A1W2PQ27 194 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 A0A1W2PQ64 194 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 A0A1W2PQD8 194 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 IGSF3O75054 1194 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 SMC2O95347 1197 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 PHKG2P15735 406 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 TPM4P67936 248 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 CCDC150Q8NCX0 1101 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 ORAI2Q96SN7 254 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 OSBPL5Q9H0X9 879 aaPredicted RBP14.22□□□□□ -0.13
SHMT1-208ENST00000582352 KCND1Q9NSA2 647 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 MAST3O60307 1309 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 NRDCO43847 1150 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 TICAM2Q86XR7 235 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 KCNG4Q8TDN1 519 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 NLRP2Q9NX02 1062 aa14.22□□□□□ -0.13
SHMT1-208ENST00000582352 MORC2Q9Y6X9 1032 aaPredicted RBP14.22□□□□□ -0.13
SHMT1-208ENST00000582352 SLU7O95391 586 aaKnown RBP14.21□□□□□ -0.13
SHMT1-208ENST00000582352 TATP17735 454 aaPredicted RBP14.21□□□□□ -0.13
SHMT1-208ENST00000582352 NDUFA8P51970 172 aa14.21□□□□□ -0.13
SHMT1-208ENST00000582352 ELF2Q15723 593 aa14.21□□□□□ -0.13
SHMT1-208ENST00000582352 DPCR1Q3MIW9 517 aa14.21□□□□□ -0.13
SHMT1-208ENST00000582352 KMT5BQ4FZB7 885 aa14.21□□□□□ -0.13
SHMT1-208ENST00000582352 NBPF11Q86T75 865 aa14.21□□□□□ -0.13
SHMT1-208ENST00000582352 KRT222Q8N1A0 295 aa14.21□□□□□ -0.13
SHMT1-208ENST00000582352 FMNL2Q96PY5 1086 aa14.21□□□□□ -0.13
SHMT1-208ENST00000582352 KIAA1468Q9P260 1216 aa14.21□□□□□ -0.13
SHMT1-208ENST00000582352 A0A0G2JLW4 131 aa14.21□□□□□ -0.14
SHMT1-208ENST00000582352 SFPQP23246 707 aaKnown RBP eCLIP14.21□□□□□ -0.14
SHMT1-208ENST00000582352 ANKLE2Q86XL3 938 aa14.21□□□□□ -0.14
SHMT1-208ENST00000582352 CASP7P55210 303 aa14.2□□□□□ -0.14
SHMT1-208ENST00000582352 LINC00301Q8NCQ3 95 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms