RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 TTLL11Q8NHH1 800 aa11.2□□□□□ -0.62
SS18-220ENST00000582092 DNAJC2Q99543 621 aaKnown RBP11.2□□□□□ -0.62
SS18-220ENST00000582092 MPHOSPH8Q99549 860 aa11.2□□□□□ -0.62
SS18-220ENST00000582092 ZNF219Q9P2Y4 722 aaPredicted RBP11.2□□□□□ -0.62
SS18-220ENST00000582092 RIC1Q4ADV7 1423 aa11.19□□□□□ -0.62
SS18-220ENST00000582092 IGHMBP2P38935 993 aaKnown RBP11.19□□□□□ -0.62
SS18-220ENST00000582092 NBR1Q14596 966 aa11.19□□□□□ -0.62
SS18-220ENST00000582092 ERFEQ4G0M1 354 aa11.19□□□□□ -0.62
SS18-220ENST00000582092 LRRC24Q50LG9 513 aa11.19□□□□□ -0.62
SS18-220ENST00000582092 CCDC93Q567U6 631 aa11.19□□□□□ -0.62
SS18-220ENST00000582092 CC2D2BQ6DHV5 1058 aa11.19□□□□□ -0.62
SS18-220ENST00000582092 DPY19L2Q6NUT2 758 aa11.19□□□□□ -0.62
SS18-220ENST00000582092 RTKN2Q8IZC4 609 aa11.19□□□□□ -0.62
SS18-220ENST00000582092 SPRYD3Q8NCJ5 442 aa11.19□□□□□ -0.62
SS18-220ENST00000582092 RBM17Q96I25 401 aaKnown RBP11.19□□□□□ -0.62
SS18-220ENST00000582092 SLKQ9H2G2 1235 aaPredicted RBP11.19□□□□□ -0.62
SS18-220ENST00000582092 TAOK3Q9H2K8 898 aa11.19□□□□□ -0.62
SS18-220ENST00000582092 UBN2Q6ZU65 1347 aa11.18□□□□□ -0.62
SS18-220ENST00000582092 GOLGB1Q14789 3259 aaKnown RBP11.18□□□□□ -0.62
SS18-220ENST00000582092 AK9Q5TCS8 1911 aa11.18□□□□□ -0.62
SS18-220ENST00000582092 NTSR2O95665 410 aa11.18□□□□□ -0.62
SS18-220ENST00000582092 IFIT1P09914 478 aaKnown RBP11.18□□□□□ -0.62
SS18-220ENST00000582092 ANAPC15P60006 121 aa11.18□□□□□ -0.62
SS18-220ENST00000582092 C1QTNF8P60827 252 aa11.18□□□□□ -0.62
SS18-220ENST00000582092 TIMM10P62072 90 aa11.18□□□□□ -0.62
SS18-220ENST00000582092 ATG9AQ7Z3C6 839 aa11.18□□□□□ -0.62
SS18-220ENST00000582092 DBNDD2Q9BQY9 259 aa11.18□□□□□ -0.62
SS18-220ENST00000582092 TLR7Q9NYK1 1049 aaKnown RBP11.18□□□□□ -0.62
SS18-220ENST00000582092 LTBP3Q9NS15 1303 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 A0A1B0GUL7 405 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 K7ELQ4 463 aaPredicted RBP11.17□□□□□ -0.62
SS18-220ENST00000582092 SGSM2O43147 1006 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 HCLS1P14317 486 aaPredicted RBP11.17□□□□□ -0.62
SS18-220ENST00000582092 MCM2P49736 904 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 RASSF7Q02833 373 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 CRY2Q49AN0 593 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 SLC10A5Q5PT55 438 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 RNF20Q5VTR2 975 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 SYNE4Q8N205 404 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 CRAMP1Q96RY5 1269 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 CDC5LQ99459 802 aaKnown RBP11.17□□□□□ -0.62
SS18-220ENST00000582092 HAUS7Q99871 368 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 PUS3Q9BZE2 481 aaKnown RBP11.17□□□□□ -0.62
SS18-220ENST00000582092 GREM2Q9H772 168 aa11.17□□□□□ -0.62
SS18-220ENST00000582092 DBNLQ9UJU6 430 aaKnown RBP11.17□□□□□ -0.62
SS18-220ENST00000582092 TNRC6CQ9HCJ0 1690 aaKnown RBP11.17□□□□□ -0.62
SS18-220ENST00000582092 MROH5Q6ZUA9 1318 aa11.16□□□□□ -0.62
SS18-220ENST00000582092 RAD50Q92878 1312 aa11.16□□□□□ -0.62
SS18-220ENST00000582092 TIAM2Q8IVF5 1701 aa11.16□□□□□ -0.62
SS18-220ENST00000582092 UTRNP46939 3433 aa11.16□□□□□ -0.62
SS18-220ENST00000582092 ZKSCAN1P17029 563 aaPredicted RBP11.16□□□□□ -0.62
SS18-220ENST00000582092 NEK4P51957 841 aa11.16□□□□□ -0.62
SS18-220ENST00000582092 ATP2B3Q16720 1220 aa11.16□□□□□ -0.62
SS18-220ENST00000582092 TICAM2Q86XR7 235 aa11.16□□□□□ -0.62
SS18-220ENST00000582092 ABCC12Q96J65 1359 aa11.16□□□□□ -0.62
SS18-220ENST00000582092 SLC5A1P13866 664 aa11.15□□□□□ -0.62
SS18-220ENST00000582092 HOXA10P31260 410 aaPredicted RBP11.15□□□□□ -0.62
SS18-220ENST00000582092 FKBP4Q02790 459 aaKnown RBP eCLIP11.15□□□□□ -0.62
SS18-220ENST00000582092 NMIQ13287 307 aaPredicted RBP11.15□□□□□ -0.62
SS18-220ENST00000582092 DDX46Q7L014 1031 aaKnown RBP11.15□□□□□ -0.62
SS18-220ENST00000582092 PAG1Q9NWQ8 432 aa11.15□□□□□ -0.62
SS18-220ENST00000582092 CHMP5Q9NZZ3 219 aa11.15□□□□□ -0.62
SS18-220ENST00000582092 LAMB2P55268 1798 aa11.15□□□□□ -0.62
SS18-220ENST00000582092 GLTPD2A6NH11 291 aa11.14□□□□□ -0.63
SS18-220ENST00000582092 NFKBIEO00221 500 aa11.14□□□□□ -0.63
SS18-220ENST00000582092 GOLIM4O00461 696 aa11.14□□□□□ -0.63
SS18-220ENST00000582092 TOMM70O94826 608 aa11.14□□□□□ -0.63
SS18-220ENST00000582092 ZSCAN25Q6NSZ9 544 aa11.14□□□□□ -0.63
SS18-220ENST00000582092 TMC4Q7Z404 712 aa11.14□□□□□ -0.63
SS18-220ENST00000582092 ANKRD18AQ8IVF6 992 aa11.14□□□□□ -0.63
SS18-220ENST00000582092 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.14□□□□□ -0.63
SS18-220ENST00000582092 XAGE2Q96GT9 111 aa11.14□□□□□ -0.63
SS18-220ENST00000582092 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.14□□□□□ -0.63
SS18-220ENST00000582092 RIPOR2Q9Y4F9 1068 aa11.14□□□□□ -0.63
SS18-220ENST00000582092 PPEF1O14829 653 aaPredicted RBP11.13□□□□□ -0.63
SS18-220ENST00000582092 BBOX1O75936 387 aa11.13□□□□□ -0.63
SS18-220ENST00000582092 UQCRFS1P1P0C7P4 283 aa11.13□□□□□ -0.63
SS18-220ENST00000582092 PSMA5P28066 241 aa11.13□□□□□ -0.63
SS18-220ENST00000582092 HSPA4P34932 840 aa11.13□□□□□ -0.63
SS18-220ENST00000582092 TTF1Q15361 905 aaPredicted RBP11.13□□□□□ -0.63
SS18-220ENST00000582092 PUM3Q15397 648 aaKnown RBP11.13□□□□□ -0.63
SS18-220ENST00000582092 KBTBD3Q8NAB2 608 aa11.13□□□□□ -0.63
SS18-220ENST00000582092 SUPT20HQ8NEM7 779 aa11.13□□□□□ -0.63
SS18-220ENST00000582092 C7orf43Q8WVR3 580 aa11.13□□□□□ -0.63
SS18-220ENST00000582092 JDP2Q8WYK2 163 aa11.13□□□□□ -0.63
SS18-220ENST00000582092 KIF2CQ99661 725 aa11.13□□□□□ -0.63
SS18-220ENST00000582092 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.13□□□□□ -0.63
SS18-220ENST00000582092 MYH3P11055 1940 aa11.13□□□□□ -0.63
SS18-220ENST00000582092 PDE8BO95263 885 aa11.12□□□□□ -0.63
SS18-220ENST00000582092 ZFYP08048 801 aaPredicted RBP11.12□□□□□ -0.63
SS18-220ENST00000582092 VEGFAP15692 232 aaPredicted RBP11.12□□□□□ -0.63
SS18-220ENST00000582092 MCMDC2Q4G0Z9 681 aa11.12□□□□□ -0.63
SS18-220ENST00000582092 LPIN2Q92539 896 aa11.12□□□□□ -0.63
SS18-220ENST00000582092 PSMD1Q99460 953 aa11.12□□□□□ -0.63
SS18-220ENST00000582092 LSG1Q9H089 658 aaKnown RBP11.12□□□□□ -0.63
SS18-220ENST00000582092 HELLSQ9NRZ9 838 aa11.12□□□□□ -0.63
SS18-220ENST00000582092 GNL3LQ9NVN8 582 aaKnown RBP11.12□□□□□ -0.63
SS18-220ENST00000582092 ZNF609O15014 1411 aa11.11□□□□□ -0.63
SS18-220ENST00000582092 KIF3CO14782 793 aa11.11□□□□□ -0.63
SS18-220ENST00000582092 IARSP41252 1262 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms