RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 LPIN2Q92539 896 aa11.84□□□□□ -0.51
CCDC40-214ENST00000575431 L3MBTL3Q96JM7 780 aaPredicted RBP11.84□□□□□ -0.51
CCDC40-214ENST00000575431 DBNDD1Q9H9R9 158 aa11.84□□□□□ -0.51
CCDC40-214ENST00000575431 PA2G4Q9UQ80 394 aaKnown RBP11.84□□□□□ -0.51
CCDC40-214ENST00000575431 COL4A5P29400 1685 aa11.84□□□□□ -0.51
CCDC40-214ENST00000575431 WDR90Q96KV7 1748 aa11.83□□□□□ -0.52
CCDC40-214ENST00000575431 DDNO94850 711 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-214ENST00000575431 SLC5A1P13866 664 aa11.83□□□□□ -0.52
CCDC40-214ENST00000575431 VEGFAP15692 232 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-214ENST00000575431 HIBADHP31937 336 aaKnown RBP11.83□□□□□ -0.52
CCDC40-214ENST00000575431 OS9Q13438 667 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-214ENST00000575431 DOK7Q18PE1 504 aa11.83□□□□□ -0.52
CCDC40-214ENST00000575431 ERC1Q8IUD2 1116 aa11.83□□□□□ -0.52
CCDC40-214ENST00000575431 GPR101Q96P66 508 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-214ENST00000575431 CD209Q9NNX6 404 aa11.83□□□□□ -0.52
CCDC40-214ENST00000575431 ZNF541Q9H0D2 1346 aa11.83□□□□□ -0.52
CCDC40-214ENST00000575431 IRS2Q9Y4H2 1338 aa11.83□□□□□ -0.52
CCDC40-214ENST00000575431 SCN4AP35499 1836 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 YDJCA8MPS7 323 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 IL1R1P14778 569 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 FGFR2P21802 821 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 RPS12P25398 132 aaKnown RBP11.82□□□□□ -0.52
CCDC40-214ENST00000575431 LMOD1P29536 600 aaPredicted RBP11.82□□□□□ -0.52
CCDC40-214ENST00000575431 MMP14P50281 582 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 ATP2B3Q16720 1220 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 TXNRD3Q86VQ6 643 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 VPS37DQ86XT2 251 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 ZNF526Q8TF50 670 aaPredicted RBP11.82□□□□□ -0.52
CCDC40-214ENST00000575431 GPR108Q9NPR9 543 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 GJA3Q9Y6H8 435 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 MYO3BQ8WXR4 1341 aa11.82□□□□□ -0.52
CCDC40-214ENST00000575431 ZNF609O15014 1411 aa11.81□□□□□ -0.52
CCDC40-214ENST00000575431 USP17L3A6NCW0 530 aa11.81□□□□□ -0.52
CCDC40-214ENST00000575431 USP17L4A6NCW7 530 aa11.81□□□□□ -0.52
CCDC40-214ENST00000575431 WTIPA6NIX2 430 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-214ENST00000575431 ZBTB22O15209 634 aa11.81□□□□□ -0.52
CCDC40-214ENST00000575431 RAD17O75943 681 aa11.81□□□□□ -0.52
CCDC40-214ENST00000575431 SASH1O94885 1247 aa11.81□□□□□ -0.52
CCDC40-214ENST00000575431 VIL1P09327 827 aaKnown RBP11.81□□□□□ -0.52
CCDC40-214ENST00000575431 STRIP1Q5VSL9 837 aa11.81□□□□□ -0.52
CCDC40-214ENST00000575431 USP17L1Q7RTZ2 530 aa11.81□□□□□ -0.52
CCDC40-214ENST00000575431 DPF2Q92785 391 aa11.81□□□□□ -0.52
CCDC40-214ENST00000575431 FAM84BQ96KN1 310 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-214ENST00000575431 CRBNQ96SW2 442 aa11.81□□□□□ -0.52
CCDC40-214ENST00000575431 SNAP23O00161 211 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 RAB11FIP3O75154 756 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 KLRK1P26718 216 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 FKBP1AP62942 108 aaKnown RBP11.8□□□□□ -0.52
CCDC40-214ENST00000575431 TFCP2Q12800 502 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 TTLL5Q6EMB2 1281 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 FBXO33Q7Z6M2 555 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 C16orf71Q8IYS4 520 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-214ENST00000575431 AGBL3Q8NEM8 1001 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 TDRD7Q8NHU6 1098 aaKnown RBP11.8□□□□□ -0.52
CCDC40-214ENST00000575431 RRAGCQ9HB90 399 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 NMRK2Q9NPI5 230 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 GNL3LQ9NVN8 582 aaKnown RBP11.8□□□□□ -0.52
CCDC40-214ENST00000575431 HACL1Q9UJ83 578 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 PSME4Q14997 1843 aa11.8□□□□□ -0.52
CCDC40-214ENST00000575431 A0A1B0GUL7 405 aa11.79□□□□□ -0.52
CCDC40-214ENST00000575431 PSMD14O00487 310 aa11.79□□□□□ -0.52
CCDC40-214ENST00000575431 SEMA3EO15041 775 aa11.79□□□□□ -0.52
CCDC40-214ENST00000575431 GYG1P46976 350 aa11.79□□□□□ -0.52
CCDC40-214ENST00000575431 RSBN1LQ6PCB5 846 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-214ENST00000575431 PNMA8AQ86V59 439 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-214ENST00000575431 SIRT2Q8IXJ6 389 aa11.79□□□□□ -0.52
CCDC40-214ENST00000575431 FAM205AQ6ZU69 1335 aa11.79□□□□□ -0.52
CCDC40-214ENST00000575431 H7C1D1 291 aa11.78□□□□□ -0.52
CCDC40-214ENST00000575431 KIF3CO14782 793 aa11.78□□□□□ -0.52
CCDC40-214ENST00000575431 FRAT2O75474 233 aaPredicted RBP11.78□□□□□ -0.52
CCDC40-214ENST00000575431 CENPBP07199 599 aaPredicted RBP11.78□□□□□ -0.52
CCDC40-214ENST00000575431 SCNN1DP51172 638 aa11.78□□□□□ -0.52
CCDC40-214ENST00000575431 GTF2IP78347 998 aa11.78□□□□□ -0.52
CCDC40-214ENST00000575431 KIF1BPQ96EK5 621 aa11.78□□□□□ -0.52
CCDC40-214ENST00000575431 NEUROD6Q96NK8 337 aa11.78□□□□□ -0.52
CCDC40-214ENST00000575431 GPRC5DQ9NZD1 345 aa11.78□□□□□ -0.52
CCDC40-214ENST00000575431 EXOC6BQ9Y2D4 811 aa11.78□□□□□ -0.52
CCDC40-214ENST00000575431 ARAP2Q8WZ64 1704 aa11.77□□□□□ -0.52
CCDC40-214ENST00000575431 POTECB2RU33 542 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 TOMM70O94826 608 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 EPHX2P34913 555 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 GMPSP49915 693 aaPredicted RBP11.77□□□□□ -0.53
CCDC40-214ENST00000575431 TIMM10P62072 90 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 TNNI3KQ59H18 835 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 DACT2Q5SW24 774 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 GORABQ5T7V8 394 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 USP50Q70EL3 339 aaPredicted RBP11.77□□□□□ -0.53
CCDC40-214ENST00000575431 CLASRPQ8N2M8 674 aaKnown RBP11.77□□□□□ -0.53
CCDC40-214ENST00000575431 OGFOD1Q8N543 542 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 TBC1D22AQ8WUA7 517 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 XAGE2Q96GT9 111 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 TAF1DQ9H5J8 278 aaPredicted RBP11.77□□□□□ -0.53
CCDC40-214ENST00000575431 DCTPP1Q9H773 170 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 KCNQ5Q9NR82 932 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 ADARB2Q9NS39 739 aaKnown RBP11.77□□□□□ -0.53
CCDC40-214ENST00000575431 CNOT7Q9UIV1 285 aaKnown RBP11.77□□□□□ -0.53
CCDC40-214ENST00000575431 FPGT-TNNI3KV9GXZ4 949 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 SCN9AQ15858 1988 aa11.77□□□□□ -0.53
CCDC40-214ENST00000575431 USP17L8P0C7I0 530 aa11.76□□□□□ -0.53
CCDC40-214ENST00000575431 UQCRFS1P1P0C7P4 283 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms