RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 SNAP23O00161 211 aa22.45■■□□□ 1.18
CCDC40-213ENST00000574933 IGHDP01880 384 aa22.45■■□□□ 1.18
CCDC40-213ENST00000574933 KCNJ4P48050 445 aa22.45■■□□□ 1.18
CCDC40-213ENST00000574933 WASHC4Q2M389 1173 aa22.45■■□□□ 1.18
CCDC40-213ENST00000574933 SMC5Q8IY18 1101 aa22.45■■□□□ 1.18
CCDC40-213ENST00000574933 ZNF646O15015 1829 aaPredicted RBP22.44■■□□□ 1.18
CCDC40-213ENST00000574933 ATP2B3Q16720 1220 aa22.44■■□□□ 1.18
CCDC40-213ENST00000574933 ZC3H12CQ9C0D7 883 aaKnown RBP22.44■■□□□ 1.18
CCDC40-213ENST00000574933 PPIP5K2O43314 1243 aa22.43■■□□□ 1.18
CCDC40-213ENST00000574933 IFIT1P09914 478 aaKnown RBP22.43■■□□□ 1.18
CCDC40-213ENST00000574933 SLC5A1P13866 664 aa22.43■■□□□ 1.18
CCDC40-213ENST00000574933 TXNRD3Q86VQ6 643 aa22.43■■□□□ 1.18
CCDC40-213ENST00000574933 ZBTB22O15209 634 aa22.42■■□□□ 1.18
CCDC40-213ENST00000574933 KLRK1P26718 216 aa22.42■■□□□ 1.18
CCDC40-213ENST00000574933 AOC3Q16853 763 aa22.42■■□□□ 1.18
CCDC40-213ENST00000574933 TNNI3KQ59H18 835 aa22.42■■□□□ 1.18
CCDC40-213ENST00000574933 GPR101Q96P66 508 aaPredicted RBP22.42■■□□□ 1.18
CCDC40-213ENST00000574933 LRRCC1Q9C099 1032 aa22.42■■□□□ 1.18
CCDC40-213ENST00000574933 FPGT-TNNI3KV9GXZ4 949 aa22.42■■□□□ 1.18
CCDC40-213ENST00000574933 AKAP11Q9UKA4 1901 aa22.41■■□□□ 1.18
CCDC40-213ENST00000574933 A0A1B0GUL7 405 aa22.41■■□□□ 1.18
CCDC40-213ENST00000574933 LARGE2Q8N3Y3 721 aa22.41■■□□□ 1.18
CCDC40-213ENST00000574933 ZC3H4Q9UPT8 1303 aaKnown RBP22.4■■□□□ 1.18
CCDC40-213ENST00000574933 TIMM10P62072 90 aa22.4■■□□□ 1.18
CCDC40-213ENST00000574933 FBXO33Q7Z6M2 555 aa22.4■■□□□ 1.18
CCDC40-213ENST00000574933 FAM84BQ96KN1 310 aaPredicted RBP22.4■■□□□ 1.18
CCDC40-213ENST00000574933 COA1Q9GZY4 146 aa22.4■■□□□ 1.18
CCDC40-213ENST00000574933 UTRNP46939 3433 aa22.4■■□□□ 1.18
CCDC40-213ENST00000574933 RIMBP2O15034 1052 aa22.39■■□□□ 1.17
CCDC40-213ENST00000574933 C9orf131Q5VYM1 1079 aa22.39■■□□□ 1.17
CCDC40-213ENST00000574933 CLASRPQ8N2M8 674 aaKnown RBP22.39■■□□□ 1.17
CCDC40-213ENST00000574933 EAF2Q96CJ1 260 aaPredicted RBP22.39■■□□□ 1.17
CCDC40-213ENST00000574933 ZNF804AQ7Z570 1209 aa22.38■■□□□ 1.17
CCDC40-213ENST00000574933 JDP2Q8WYK2 163 aa22.38■■□□□ 1.17
CCDC40-213ENST00000574933 XAGE2Q96GT9 111 aa22.38■■□□□ 1.17
CCDC40-213ENST00000574933 IL1RAPL2Q9NP60 686 aa22.38■■□□□ 1.17
CCDC40-213ENST00000574933 RNF181Q9P0P0 153 aa22.38■■□□□ 1.17
CCDC40-213ENST00000574933 FZD9O00144 591 aa22.37■■□□□ 1.17
CCDC40-213ENST00000574933 APBB1O00213 710 aa22.37■■□□□ 1.17
CCDC40-213ENST00000574933 IL1R1P14778 569 aa22.37■■□□□ 1.17
CCDC40-213ENST00000574933 HIBADHP31937 336 aaKnown RBP22.37■■□□□ 1.17
CCDC40-213ENST00000574933 PODNQ7Z5L7 613 aa22.37■■□□□ 1.17
CCDC40-213ENST00000574933 NIM1KQ8IY84 436 aa22.37■■□□□ 1.17
CCDC40-213ENST00000574933 KDM2BQ8NHM5 1336 aa22.36■■□□□ 1.17
CCDC40-213ENST00000574933 ADORA1P30542 326 aa22.36■■□□□ 1.17
CCDC40-213ENST00000574933 GYG1P46976 350 aa22.36■■□□□ 1.17
CCDC40-213ENST00000574933 CAVIN4Q5BKX8 364 aa22.36■■□□□ 1.17
CCDC40-213ENST00000574933 CD209Q9NNX6 404 aa22.36■■□□□ 1.17
CCDC40-213ENST00000574933 PPP4R2Q9NY27 417 aa22.36■■□□□ 1.17
CCDC40-213ENST00000574933 ZNRF3Q9ULT6 936 aa22.36■■□□□ 1.17
CCDC40-213ENST00000574933 ECE2O60344 883 aa22.35■■□□□ 1.17
CCDC40-213ENST00000574933 AACSQ86V21 672 aa22.35■■□□□ 1.17
CCDC40-213ENST00000574933 TDRD7Q8NHU6 1098 aaKnown RBP22.35■■□□□ 1.17
CCDC40-213ENST00000574933 NEUROD6Q96NK8 337 aa22.35■■□□□ 1.17
CCDC40-213ENST00000574933 DBNDD1Q9H9R9 158 aa22.35■■□□□ 1.17
CCDC40-213ENST00000574933 DBNLQ9UJU6 430 aaKnown RBP22.35■■□□□ 1.17
CCDC40-213ENST00000574933 YDJCA8MPS7 323 aa22.34■■□□□ 1.17
CCDC40-213ENST00000574933 SMARCA5O60264 1052 aaPredicted RBP22.34■■□□□ 1.17
CCDC40-213ENST00000574933 BCAMP50895 628 aa22.34■■□□□ 1.17
CCDC40-213ENST00000574933 DOK7Q18PE1 504 aa22.34■■□□□ 1.17
CCDC40-213ENST00000574933 DBNDD2Q9BQY9 259 aa22.34■■□□□ 1.17
CCDC40-213ENST00000574933 NUCB1Q02818 461 aa22.33■■□□□ 1.17
CCDC40-213ENST00000574933 ANKRD45Q5TZF3 282 aa22.33■■□□□ 1.17
CCDC40-213ENST00000574933 CCDC102BQ68D86 513 aa22.33■■□□□ 1.17
CCDC40-213ENST00000574933 ZNF512BQ96KM6 892 aaPredicted RBP22.33■■□□□ 1.17
CCDC40-213ENST00000574933 CCDC8Q9H0W5 538 aaPredicted RBP22.33■■□□□ 1.17
CCDC40-213ENST00000574933 G3V3G9 751 aa22.32■■□□□ 1.16
CCDC40-213ENST00000574933 PHKA1P46020 1223 aa22.32■■□□□ 1.16
CCDC40-213ENST00000574933 DCAF8Q5TAQ9 597 aa22.32■■□□□ 1.16
CCDC40-213ENST00000574933 CENPQQ7L2Z9 268 aaPredicted RBP22.32■■□□□ 1.16
CCDC40-213ENST00000574933 VPS37DQ86XT2 251 aa22.32■■□□□ 1.16
CCDC40-213ENST00000574933 CCDC136Q96JN2 1154 aa22.32■■□□□ 1.16
CCDC40-213ENST00000574933 TLR7Q9NYK1 1049 aaKnown RBP22.32■■□□□ 1.16
CCDC40-213ENST00000574933 SEMA3EO15041 775 aa22.31■■□□□ 1.16
CCDC40-213ENST00000574933 IFIT2P09913 472 aaKnown RBP22.31■■□□□ 1.16
CCDC40-213ENST00000574933 ARID4AP29374 1257 aaPredicted RBP22.31■■□□□ 1.16
CCDC40-213ENST00000574933 GNL3LQ9NVN8 582 aaKnown RBP22.31■■□□□ 1.16
CCDC40-213ENST00000574933 PDS5AQ29RF7 1337 aaKnown RBP22.31■■□□□ 1.16
CCDC40-213ENST00000574933 FAM205AQ6ZU69 1335 aa22.31■■□□□ 1.16
CCDC40-213ENST00000574933 MYO5AQ9Y4I1 1855 aaKnown RBP22.3■■□□□ 1.16
CCDC40-213ENST00000574933 CXCL9Q07325 125 aa22.3■■□□□ 1.16
CCDC40-213ENST00000574933 CHD1LQ86WJ1 897 aa22.3■■□□□ 1.16
CCDC40-213ENST00000574933 SALL3Q9BXA9 1300 aa22.3■■□□□ 1.16
CCDC40-213ENST00000574933 UQCRFS1P1P0C7P4 283 aa22.29■■□□□ 1.16
CCDC40-213ENST00000574933 EIF6P56537 245 aaKnown RBP22.29■■□□□ 1.16
CCDC40-213ENST00000574933 CCDC158Q5M9N0 1113 aa22.29■■□□□ 1.16
CCDC40-213ENST00000574933 GORABQ5T7V8 394 aa22.29■■□□□ 1.16
CCDC40-213ENST00000574933 ZBTB47Q9UFB7 747 aaPredicted RBP22.29■■□□□ 1.16
CCDC40-213ENST00000574933 STRIP1Q5VSL9 837 aa22.28■■□□□ 1.16
CCDC40-213ENST00000574933 CIAPIN1Q6FI81 312 aa22.28■■□□□ 1.16
CCDC40-213ENST00000574933 B4GALNT3Q6L9W6 998 aa22.28■■□□□ 1.16
CCDC40-213ENST00000574933 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.28■■□□□ 1.16
CCDC40-213ENST00000574933 KCNQ5Q9NR82 932 aa22.28■■□□□ 1.16
CCDC40-213ENST00000574933 ZNF541Q9H0D2 1346 aa22.28■■□□□ 1.16
CCDC40-213ENST00000574933 COL1A1P02452 1464 aaPredicted RBP22.28■■□□□ 1.16
CCDC40-213ENST00000574933 SCN4AP35499 1836 aa22.27■■□□□ 1.16
CCDC40-213ENST00000574933 USP17L3A6NCW0 530 aa22.27■■□□□ 1.16
CCDC40-213ENST00000574933 USP17L4A6NCW7 530 aa22.27■■□□□ 1.16
CCDC40-213ENST00000574933 VIL1P09327 827 aaKnown RBP22.27■■□□□ 1.16
CCDC40-213ENST00000574933 FKBP1AP62942 108 aaKnown RBP22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms