RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 PHKA1P46020 1223 aa29.34■■■□□ 2.29
ATPAF1-213ENST00000574428 ZNF219Q9P2Y4 722 aaPredicted RBP29.34■■■□□ 2.29
ATPAF1-213ENST00000574428 CD2APQ9Y5K6 639 aa29.34■■■□□ 2.29
ATPAF1-213ENST00000574428 LTBP1Q14766 1721 aa29.33■■■□□ 2.29
ATPAF1-213ENST00000574428 TRIM6-TRIM34B2RNG4 842 aa29.33■■■□□ 2.29
ATPAF1-213ENST00000574428 CCDC102BQ68D86 513 aa29.33■■■□□ 2.29
ATPAF1-213ENST00000574428 LEMD3Q9Y2U8 911 aa29.33■■■□□ 2.29
ATPAF1-213ENST00000574428 TTLL6Q8N841 843 aa29.32■■■□□ 2.28
ATPAF1-213ENST00000574428 UFL1O94874 794 aa29.31■■■□□ 2.28
ATPAF1-213ENST00000574428 GPR101Q96P66 508 aaPredicted RBP29.31■■■□□ 2.28
ATPAF1-213ENST00000574428 PODXL2Q9NZ53 605 aa29.31■■■□□ 2.28
ATPAF1-213ENST00000574428 GGA1Q9UJY5 639 aa29.31■■■□□ 2.28
ATPAF1-213ENST00000574428 NDUFB9Q9Y6M9 179 aa29.31■■■□□ 2.28
ATPAF1-213ENST00000574428 GYG1P46976 350 aa29.31■■■□□ 2.28
ATPAF1-213ENST00000574428 BCAMP50895 628 aa29.31■■■□□ 2.28
ATPAF1-213ENST00000574428 RILPL2Q969X0 211 aa29.31■■■□□ 2.28
ATPAF1-213ENST00000574428 TMX4Q9H1E5 349 aaPredicted RBP29.31■■■□□ 2.28
ATPAF1-213ENST00000574428 RBM19Q9Y4C8 960 aaKnown RBP29.31■■■□□ 2.28
ATPAF1-213ENST00000574428 ATP2B4P23634 1241 aa29.29■■■□□ 2.28
ATPAF1-213ENST00000574428 SCARF1Q14162 830 aa29.29■■■□□ 2.28
ATPAF1-213ENST00000574428 DNAJC2Q99543 621 aaKnown RBP29.29■■■□□ 2.28
ATPAF1-213ENST00000574428 WWC3Q9ULE0 1092 aa29.29■■■□□ 2.28
ATPAF1-213ENST00000574428 IRS2Q9Y4H2 1338 aa29.29■■■□□ 2.28
ATPAF1-213ENST00000574428 MPNDQ8N594 471 aa29.29■■■□□ 2.28
ATPAF1-213ENST00000574428 TBC1D16Q8TBP0 767 aa29.29■■■□□ 2.28
ATPAF1-213ENST00000574428 C7orf43Q8WVR3 580 aa29.29■■■□□ 2.28
ATPAF1-213ENST00000574428 HAUS7Q99871 368 aa29.29■■■□□ 2.28
ATPAF1-213ENST00000574428 POLLQ9UGP5 575 aa29.29■■■□□ 2.28
ATPAF1-213ENST00000574428 DUOX1Q9NRD9 1551 aa29.28■■■□□ 2.28
ATPAF1-213ENST00000574428 C8orf34Q49A92 452 aa29.28■■■□□ 2.28
ATPAF1-213ENST00000574428 TXNRD3Q86VQ6 643 aa29.28■■■□□ 2.28
ATPAF1-213ENST00000574428 CAVIN4Q5BKX8 364 aa29.27■■■□□ 2.28
ATPAF1-213ENST00000574428 DPP8Q6V1X1 898 aaPredicted RBP29.27■■■□□ 2.28
ATPAF1-213ENST00000574428 EDC3Q96F86 508 aaKnown RBP29.27■■■□□ 2.28
ATPAF1-213ENST00000574428 FAM84BQ96KN1 310 aaPredicted RBP29.27■■■□□ 2.28
ATPAF1-213ENST00000574428 PIM2Q9P1W9 311 aa29.27■■■□□ 2.28
ATPAF1-213ENST00000574428 C6orf229H3BNL8 230 aa29.26■■■□□ 2.28
ATPAF1-213ENST00000574428 C21orf2O43822 256 aa29.26■■■□□ 2.28
ATPAF1-213ENST00000574428 ARID4AP29374 1257 aaPredicted RBP29.26■■■□□ 2.28
ATPAF1-213ENST00000574428 MCAMP43121 646 aa29.26■■■□□ 2.28
ATPAF1-213ENST00000574428 PI16Q6UXB8 463 aa29.26■■■□□ 2.28
ATPAF1-213ENST00000574428 PPIL4Q8WUA2 492 aaKnown RBP eCLIP29.26■■■□□ 2.28
ATPAF1-213ENST00000574428 ZNF512BQ96KM6 892 aaPredicted RBP29.26■■■□□ 2.28
ATPAF1-213ENST00000574428 SNRKQ9NRH2 765 aa29.26■■■□□ 2.28
ATPAF1-213ENST00000574428 SOCS7O14512 581 aa29.26■■■□□ 2.27
ATPAF1-213ENST00000574428 UQCRFS1P1P0C7P4 283 aa29.26■■■□□ 2.27
ATPAF1-213ENST00000574428 CNTROBQ8N137 903 aa29.26■■■□□ 2.27
ATPAF1-213ENST00000574428 VPS37DQ86XT2 251 aa29.25■■■□□ 2.27
ATPAF1-213ENST00000574428 NLGN2Q8NFZ4 835 aa29.25■■■□□ 2.27
ATPAF1-213ENST00000574428 BRCA1P38398 1863 aaKnown RBP29.25■■■□□ 2.27
ATPAF1-213ENST00000574428 FKBP4Q02790 459 aaKnown RBP eCLIP29.24■■■□□ 2.27
ATPAF1-213ENST00000574428 IQSEC3Q9UPP2 1182 aaPredicted RBP29.24■■■□□ 2.27
ATPAF1-213ENST00000574428 AK9Q5TCS8 1911 aa29.24■■■□□ 2.27
ATPAF1-213ENST00000574428 RASGRF1Q13972 1273 aa29.24■■■□□ 2.27
ATPAF1-213ENST00000574428 FBXO33Q7Z6M2 555 aa29.24■■■□□ 2.27
ATPAF1-213ENST00000574428 GOLIM4O00461 696 aa29.23■■■□□ 2.27
ATPAF1-213ENST00000574428 CDC45O75419 566 aa29.23■■■□□ 2.27
ATPAF1-213ENST00000574428 HIBADHP31937 336 aaKnown RBP29.23■■■□□ 2.27
ATPAF1-213ENST00000574428 EVI5LQ96CN4 794 aa29.23■■■□□ 2.27
ATPAF1-213ENST00000574428 SNED1Q8TER0 1413 aa29.22■■■□□ 2.27
ATPAF1-213ENST00000574428 AKAP11Q9UKA4 1901 aa29.22■■■□□ 2.27
ATPAF1-213ENST00000574428 ZAP70P43403 619 aa29.22■■■□□ 2.27
ATPAF1-213ENST00000574428 DALRD3Q5D0E6 543 aaKnown RBP29.22■■■□□ 2.27
ATPAF1-213ENST00000574428 C15orf52Q6ZUT6 534 aaKnown RBP29.22■■■□□ 2.27
ATPAF1-213ENST00000574428 PAG1Q9NWQ8 432 aa29.22■■■□□ 2.27
ATPAF1-213ENST00000574428 GNL3LQ9NVN8 582 aaKnown RBP29.21■■■□□ 2.27
ATPAF1-213ENST00000574428 HMG20BQ9P0W2 317 aa29.21■■■□□ 2.27
ATPAF1-213ENST00000574428 MED23Q9ULK4 1368 aa29.21■■■□□ 2.27
ATPAF1-213ENST00000574428 CC2D2BQ6DHV5 1058 aa29.21■■■□□ 2.27
ATPAF1-213ENST00000574428 TBC1D9Q6ZT07 1266 aa29.21■■■□□ 2.27
ATPAF1-213ENST00000574428 FHDC1Q9C0D6 1143 aaPredicted RBP29.21■■■□□ 2.27
ATPAF1-213ENST00000574428 SPATA5Q8NB90 893 aa29.2■■■□□ 2.26
ATPAF1-213ENST00000574428 BACH2Q9BYV9 841 aa29.2■■■□□ 2.26
ATPAF1-213ENST00000574428 ANTXR1Q9H6X2 564 aa29.2■■■□□ 2.26
ATPAF1-213ENST00000574428 COL1A1P02452 1464 aaPredicted RBP29.19■■■□□ 2.26
ATPAF1-213ENST00000574428 RIMBP2O15034 1052 aa29.18■■■□□ 2.26
ATPAF1-213ENST00000574428 CCDC93Q567U6 631 aa29.18■■■□□ 2.26
ATPAF1-213ENST00000574428 ZNF804AQ7Z570 1209 aa29.18■■■□□ 2.26
ATPAF1-213ENST00000574428 FSD1Q9BTV5 496 aa29.18■■■□□ 2.26
ATPAF1-213ENST00000574428 CYP2E1P05181 493 aaPredicted RBP29.16■■■□□ 2.26
ATPAF1-213ENST00000574428 RTFDC1Q9BY42 306 aaPredicted RBP29.16■■■□□ 2.26
ATPAF1-213ENST00000574428 FRAT2O75474 233 aaPredicted RBP29.16■■■□□ 2.26
ATPAF1-213ENST00000574428 WASHC4Q2M389 1173 aa29.16■■■□□ 2.26
ATPAF1-213ENST00000574428 ZC3H12CQ9C0D7 883 aaKnown RBP29.16■■■□□ 2.26
ATPAF1-213ENST00000574428 BCS1LQ9Y276 419 aa29.16■■■□□ 2.26
ATPAF1-213ENST00000574428 GOLGB1Q14789 3259 aaKnown RBP29.16■■■□□ 2.26
ATPAF1-213ENST00000574428 CHMLP26374 656 aa29.15■■■□□ 2.26
ATPAF1-213ENST00000574428 KBTBD3Q8NAB2 608 aa29.15■■■□□ 2.26
ATPAF1-213ENST00000574428 EYA3Q99504 573 aa29.15■■■□□ 2.26
ATPAF1-213ENST00000574428 RTKN2Q8IZC4 609 aa29.14■■■□□ 2.26
ATPAF1-213ENST00000574428 DENND2AQ9ULE3 1009 aa29.14■■■□□ 2.26
ATPAF1-213ENST00000574428 MYH13Q9UKX3 1938 aa29.14■■■□□ 2.26
ATPAF1-213ENST00000574428 SEMA3EO15041 775 aa29.13■■■□□ 2.25
ATPAF1-213ENST00000574428 GRIPAP1Q4V328 841 aa29.13■■■□□ 2.25
ATPAF1-213ENST00000574428 SOGA3Q5TF21 947 aa29.13■■■□□ 2.25
ATPAF1-213ENST00000574428 CASC1Q6TDU7 716 aa29.13■■■□□ 2.25
ATPAF1-213ENST00000574428 CD209Q9NNX6 404 aa29.13■■■□□ 2.25
ATPAF1-213ENST00000574428 PIH1D3Q9NQM4 214 aaKnown RBP29.13■■■□□ 2.25
ATPAF1-213ENST00000574428 SEC24BO95487 1268 aa29.12■■■□□ 2.25
ATPAF1-213ENST00000574428 TDRD7Q8NHU6 1098 aaKnown RBP29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms