RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 TTLL12Q14166 644 aaPredicted RBP17.68■□□□□ 0.42
CLN3-235ENST00000568497 DOK7Q18PE1 504 aa17.68■□□□□ 0.42
CLN3-235ENST00000568497 MOB2Q70IA6 237 aa17.68■□□□□ 0.42
CLN3-235ENST00000568497 DDX60Q8IY21 1712 aaKnown RBP17.68■□□□□ 0.42
CLN3-235ENST00000568497 KCNQ5Q9NR82 932 aa17.68■□□□□ 0.42
CLN3-235ENST00000568497 MKI67P46013 3256 aaKnown RBP17.67■□□□□ 0.42
CLN3-235ENST00000568497 RTL9Q8NET4 1388 aa17.67■□□□□ 0.42
CLN3-235ENST00000568497 DDX58O95786 925 aaKnown RBP17.67■□□□□ 0.42
CLN3-235ENST00000568497 SLC4A10Q6U841 1118 aa17.67■□□□□ 0.42
CLN3-235ENST00000568497 LRRC37AA6NMS7 1700 aa17.67■□□□□ 0.42
CLN3-235ENST00000568497 UBE2Q2LH0YL09 131 aa17.66■□□□□ 0.42
CLN3-235ENST00000568497 SCARF1Q14162 830 aa17.66■□□□□ 0.42
CLN3-235ENST00000568497 DNAAF4Q8WXU2 420 aa17.66■□□□□ 0.42
CLN3-235ENST00000568497 SMC4Q9NTJ3 1288 aa17.66■□□□□ 0.42
CLN3-235ENST00000568497 CWC25Q9NXE8 425 aaPredicted RBP17.66■□□□□ 0.42
CLN3-235ENST00000568497 TRIM17Q9Y577 477 aa17.66■□□□□ 0.42
CLN3-235ENST00000568497 SH3TC1Q8TE82 1336 aa17.66■□□□□ 0.42
CLN3-235ENST00000568497 NEURL1BA8MQ27 555 aa17.65■□□□□ 0.42
CLN3-235ENST00000568497 G3V3G9 751 aa17.65■□□□□ 0.42
CLN3-235ENST00000568497 IRS4O14654 1257 aaPredicted RBP17.65■□□□□ 0.42
CLN3-235ENST00000568497 SREBF2Q12772 1141 aa17.65■□□□□ 0.42
CLN3-235ENST00000568497 DCAF8Q5TAQ9 597 aa17.65■□□□□ 0.42
CLN3-235ENST00000568497 INTS3Q68E01 1043 aaKnown RBP17.65■□□□□ 0.42
CLN3-235ENST00000568497 EYA3Q99504 573 aa17.65■□□□□ 0.42
CLN3-235ENST00000568497 BCAR3O75815 825 aa17.64■□□□□ 0.41
CLN3-235ENST00000568497 TM4SF4P48230 202 aa17.64■□□□□ 0.41
CLN3-235ENST00000568497 SCAF8Q9UPN6 1271 aaKnown RBP17.64■□□□□ 0.41
CLN3-235ENST00000568497 COLQQ9Y215 455 aaPredicted RBP17.64■□□□□ 0.41
CLN3-235ENST00000568497 DLL1O00548 723 aa17.63■□□□□ 0.41
CLN3-235ENST00000568497 UBE3BQ7Z3V4 1068 aa17.63■□□□□ 0.41
CLN3-235ENST00000568497 R3HDMLQ9H3Y0 253 aa17.63■□□□□ 0.41
CLN3-235ENST00000568497 NOB1Q9ULX3 412 aaKnown RBP17.63■□□□□ 0.41
CLN3-235ENST00000568497 ZBED9Q6R2W3 1325 aa17.63■□□□□ 0.41
CLN3-235ENST00000568497 KIAA0100Q14667 2235 aaKnown RBP17.63■□□□□ 0.41
CLN3-235ENST00000568497 VIL1P09327 827 aaKnown RBP17.62■□□□□ 0.41
CLN3-235ENST00000568497 RARSP54136 660 aaKnown RBP17.62■□□□□ 0.41
CLN3-235ENST00000568497 CFHR5Q9BXR6 569 aa17.62■□□□□ 0.41
CLN3-235ENST00000568497 SEC31BQ9NQW1 1179 aa17.62■□□□□ 0.41
CLN3-235ENST00000568497 POLLQ9UGP5 575 aa17.62■□□□□ 0.41
CLN3-235ENST00000568497 SCN9AQ15858 1988 aa17.61■□□□□ 0.41
CLN3-235ENST00000568497 GPSM2P81274 684 aa17.61■□□□□ 0.41
CLN3-235ENST00000568497 TRIM28Q13263 835 aaKnown RBP17.61■□□□□ 0.41
CLN3-235ENST00000568497 BEND3Q5T5X7 828 aa17.61■□□□□ 0.41
CLN3-235ENST00000568497 PRAMEF18Q5VWM3 479 aa17.61■□□□□ 0.41
CLN3-235ENST00000568497 ZBTB38Q8NAP3 1195 aaPredicted RBP17.61■□□□□ 0.41
CLN3-235ENST00000568497 CCDC191Q8NCU4 936 aa17.61■□□□□ 0.41
CLN3-235ENST00000568497 RBBP6Q7Z6E9 1792 aaKnown RBP17.61■□□□□ 0.41
CLN3-235ENST00000568497 CACNA1FO60840 1977 aa17.6■□□□□ 0.41
CLN3-235ENST00000568497 EN2P19622 333 aaPredicted RBP17.6■□□□□ 0.41
CLN3-235ENST00000568497 NF2P35240 595 aa17.6■□□□□ 0.41
CLN3-235ENST00000568497 ZNF280AP59817 542 aaPredicted RBP17.6■□□□□ 0.41
CLN3-235ENST00000568497 NEXNQ0ZGT2 675 aa17.6■□□□□ 0.41
CLN3-235ENST00000568497 GCKRQ14397 625 aa17.6■□□□□ 0.41
CLN3-235ENST00000568497 OTOP1Q7RTM1 612 aa17.6■□□□□ 0.41
CLN3-235ENST00000568497 CELF1Q92879 486 aaKnown RBP17.6■□□□□ 0.41
CLN3-235ENST00000568497 ZNF609O15014 1411 aa17.6■□□□□ 0.41
CLN3-235ENST00000568497 PITPNM2Q9BZ72 1349 aa17.59■□□□□ 0.41
CLN3-235ENST00000568497 PCCAP05165 728 aaPredicted RBP17.59■□□□□ 0.41
CLN3-235ENST00000568497 CHMP4AQ9BY43 222 aa17.59■□□□□ 0.41
CLN3-235ENST00000568497 ZC3H12CQ9C0D7 883 aaKnown RBP17.59■□□□□ 0.41
CLN3-235ENST00000568497 MYOZ2Q9NPC6 264 aa17.59■□□□□ 0.41
CLN3-235ENST00000568497 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.59■□□□□ 0.41
CLN3-235ENST00000568497 TRIOBPQ9H2D6 2365 aa17.58■□□□□ 0.41
CLN3-235ENST00000568497 CASP7P55210 303 aa17.58■□□□□ 0.4
CLN3-235ENST00000568497 SF3B3Q15393 1217 aaKnown RBP17.58■□□□□ 0.4
CLN3-235ENST00000568497 EPHA10Q5JZY3 1008 aa17.58■□□□□ 0.4
CLN3-235ENST00000568497 AGBL3Q8NEM8 1001 aa17.58■□□□□ 0.4
CLN3-235ENST00000568497 H7C1W4 665 aa17.57■□□□□ 0.4
CLN3-235ENST00000568497 ALDH1A1P00352 501 aa17.57■□□□□ 0.4
CLN3-235ENST00000568497 USP17L8P0C7I0 530 aa17.57■□□□□ 0.4
CLN3-235ENST00000568497 PRKG1Q13976 671 aa17.57■□□□□ 0.4
CLN3-235ENST00000568497 RSBN1LQ6PCB5 846 aaPredicted RBP17.57■□□□□ 0.4
CLN3-235ENST00000568497 SLC17A8Q8NDX2 589 aa17.57■□□□□ 0.4
CLN3-235ENST00000568497 LINS1Q8NG48 757 aa17.57■□□□□ 0.4
CLN3-235ENST00000568497 TBC1D16Q8TBP0 767 aa17.57■□□□□ 0.4
CLN3-235ENST00000568497 FRAT1Q92837 279 aaPredicted RBP17.57■□□□□ 0.4
CLN3-235ENST00000568497 HTTP42858 3142 aa17.56■□□□□ 0.4
CLN3-235ENST00000568497 ALDH1L2Q3SY69 923 aa17.56■□□□□ 0.4
CLN3-235ENST00000568497 TMEM106CQ9BVX2 250 aa17.56■□□□□ 0.4
CLN3-235ENST00000568497 GREM2Q9H772 168 aa17.56■□□□□ 0.4
CLN3-235ENST00000568497 UFL1O94874 794 aa17.55■□□□□ 0.4
CLN3-235ENST00000568497 CLUAP1Q96AJ1 413 aa17.55■□□□□ 0.4
CLN3-235ENST00000568497 PTPN22Q9Y2R2 807 aa17.55■□□□□ 0.4
CLN3-235ENST00000568497 CENPFP49454 3210 aa17.55■□□□□ 0.4
CLN3-235ENST00000568497 WTIPA6NIX2 430 aaPredicted RBP17.54■□□□□ 0.4
CLN3-235ENST00000568497 PDE8AO60658 829 aa17.54■□□□□ 0.4
CLN3-235ENST00000568497 NBPF7P0C2Y1 421 aaPredicted RBP17.54■□□□□ 0.4
CLN3-235ENST00000568497 CTSWP56202 376 aa17.54■□□□□ 0.4
CLN3-235ENST00000568497 PTPN12Q05209 780 aaKnown RBP17.54■□□□□ 0.4
CLN3-235ENST00000568497 ARMC9Q7Z3E5 817 aa17.54■□□□□ 0.4
CLN3-235ENST00000568497 ERO1AQ96HE7 468 aa17.54■□□□□ 0.4
CLN3-235ENST00000568497 SUCLG2Q96I99 432 aa17.54■□□□□ 0.4
CLN3-235ENST00000568497 SRCIN1Q9C0H9 1055 aa17.54■□□□□ 0.4
CLN3-235ENST00000568497 PODXL2Q9NZ53 605 aa17.54■□□□□ 0.4
CLN3-235ENST00000568497 ANKIB1Q9P2G1 1089 aa17.54■□□□□ 0.4
CLN3-235ENST00000568497 NBPF9Q3BBW0 867 aa17.53■□□□□ 0.4
CLN3-235ENST00000568497 TTLL11Q8NHH1 800 aa17.53■□□□□ 0.4
CLN3-235ENST00000568497 CD99L2Q8TCZ2 262 aa17.53■□□□□ 0.4
CLN3-235ENST00000568497 GMLQ99445 158 aa17.53■□□□□ 0.4
CLN3-235ENST00000568497 CHMP3Q9Y3E7 222 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms