RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TAF5LO75529 589 aa26.17■■□□□ 1.78
CLN3-219ENST00000565778 NBPF7P0C2Y1 421 aaPredicted RBP26.17■■□□□ 1.78
CLN3-219ENST00000565778 PAXIP1Q6ZW49 1069 aaPredicted RBP26.17■■□□□ 1.78
CLN3-219ENST00000565778 SUCLG2Q96I99 432 aa26.17■■□□□ 1.78
CLN3-219ENST00000565778 ZNF594Q96JF6 807 aaPredicted RBP26.17■■□□□ 1.78
CLN3-219ENST00000565778 SMC4Q9NTJ3 1288 aa26.17■■□□□ 1.78
CLN3-219ENST00000565778 PLIN1O60240 522 aa26.16■■□□□ 1.78
CLN3-219ENST00000565778 USP17L8P0C7I0 530 aa26.16■■□□□ 1.78
CLN3-219ENST00000565778 CNNM1Q9NRU3 951 aa26.16■■□□□ 1.78
CLN3-219ENST00000565778 SPEF2Q9C093 1822 aa26.16■■□□□ 1.78
CLN3-219ENST00000565778 SNAP23O00161 211 aa26.15■■□□□ 1.78
CLN3-219ENST00000565778 GMLQ99445 158 aa26.15■■□□□ 1.78
CLN3-219ENST00000565778 WDR33Q9C0J8 1336 aaKnown RBP26.14■■□□□ 1.78
CLN3-219ENST00000565778 KLRK1P26718 216 aa26.14■■□□□ 1.78
CLN3-219ENST00000565778 ZNF280AP59817 542 aaPredicted RBP26.14■■□□□ 1.78
CLN3-219ENST00000565778 KRT26Q7Z3Y9 468 aa26.14■■□□□ 1.78
CLN3-219ENST00000565778 TLL2Q9Y6L7 1015 aa26.14■■□□□ 1.78
CLN3-219ENST00000565778 SCN9AQ15858 1988 aa26.14■■□□□ 1.77
CLN3-219ENST00000565778 UTYO14607 1347 aa26.14■■□□□ 1.77
CLN3-219ENST00000565778 GRM1Q13255 1194 aa26.13■■□□□ 1.77
CLN3-219ENST00000565778 DACT2Q5SW24 774 aa26.13■■□□□ 1.77
CLN3-219ENST00000565778 STRIP1Q5VSL9 837 aa26.13■■□□□ 1.77
CLN3-219ENST00000565778 TTLL5Q6EMB2 1281 aa26.13■■□□□ 1.77
CLN3-219ENST00000565778 KAZALD1Q96I82 304 aa26.13■■□□□ 1.77
CLN3-219ENST00000565778 MXD3Q9BW11 206 aa26.13■■□□□ 1.77
CLN3-219ENST00000565778 PCNTO95613 3336 aa26.13■■□□□ 1.77
CLN3-219ENST00000565778 CT47B1P0C2W7 299 aaPredicted RBP26.12■■□□□ 1.77
CLN3-219ENST00000565778 SCARF1Q14162 830 aa26.12■■□□□ 1.77
CLN3-219ENST00000565778 DIEXFQ68CQ4 756 aaKnown RBP26.12■■□□□ 1.77
CLN3-219ENST00000565778 DLK2Q6UY11 383 aa26.12■■□□□ 1.77
CLN3-219ENST00000565778 MYOZ2Q9NPC6 264 aa26.12■■□□□ 1.77
CLN3-219ENST00000565778 ECE1P42892 770 aa26.11■■□□□ 1.77
CLN3-219ENST00000565778 COL13A1Q5TAT6 717 aaPredicted RBP26.11■■□□□ 1.77
CLN3-219ENST00000565778 IFFO2Q5TF58 517 aa26.11■■□□□ 1.77
CLN3-219ENST00000565778 CYP4F22Q6NT55 531 aa26.11■■□□□ 1.77
CLN3-219ENST00000565778 SAPCD2Q86UD0 394 aa26.11■■□□□ 1.77
CLN3-219ENST00000565778 MIER1Q8N108 512 aa26.11■■□□□ 1.77
CLN3-219ENST00000565778 OGFOD1Q8N543 542 aa26.11■■□□□ 1.77
CLN3-219ENST00000565778 CAPNS2Q96L46 248 aa26.11■■□□□ 1.77
CLN3-219ENST00000565778 BICC1Q9H694 974 aaKnown RBP26.11■■□□□ 1.77
CLN3-219ENST00000565778 CD209Q9NNX6 404 aa26.11■■□□□ 1.77
CLN3-219ENST00000565778 GTF2IP78347 998 aa26.1■■□□□ 1.77
CLN3-219ENST00000565778 SULF1Q8IWU6 871 aa26.1■■□□□ 1.77
CLN3-219ENST00000565778 GGA3Q9NZ52 723 aa26.1■■□□□ 1.77
CLN3-219ENST00000565778 ADM5C9JUS6 153 aa26.09■■□□□ 1.77
CLN3-219ENST00000565778 AIDAQ96BJ3 306 aa26.09■■□□□ 1.77
CLN3-219ENST00000565778 USP44Q9H0E7 712 aa26.09■■□□□ 1.77
CLN3-219ENST00000565778 NOB1Q9ULX3 412 aaKnown RBP26.09■■□□□ 1.77
CLN3-219ENST00000565778 ASTN2O75129 1339 aaPredicted RBP26.09■■□□□ 1.77
CLN3-219ENST00000565778 MYO3BQ8WXR4 1341 aa26.09■■□□□ 1.77
CLN3-219ENST00000565778 ZNF609O15014 1411 aa26.08■■□□□ 1.77
CLN3-219ENST00000565778 ANGEL2Q5VTE6 544 aaKnown RBP26.08■■□□□ 1.77
CLN3-219ENST00000565778 C15orf52Q6ZUT6 534 aaKnown RBP26.08■■□□□ 1.77
CLN3-219ENST00000565778 PUS3Q9BZE2 481 aaKnown RBP26.08■■□□□ 1.77
CLN3-219ENST00000565778 TRPM7Q96QT4 1865 aa26.07■■□□□ 1.76
CLN3-219ENST00000565778 ZNF804AQ7Z570 1209 aa26.07■■□□□ 1.76
CLN3-219ENST00000565778 MAP2K1Q02750 393 aaPredicted RBP26.06■■□□□ 1.76
CLN3-219ENST00000565778 RABL6Q3YEC7 729 aaPredicted RBP26.06■■□□□ 1.76
CLN3-219ENST00000565778 WBP1LQ9NX94 342 aa26.06■■□□□ 1.76
CLN3-219ENST00000565778 FOXN1O15353 648 aa26.05■■□□□ 1.76
CLN3-219ENST00000565778 ANKRD44Q8N8A2 993 aa26.05■■□□□ 1.76
CLN3-219ENST00000565778 C2orf69Q8N8R5 385 aa26.05■■□□□ 1.76
CLN3-219ENST00000565778 HDAC9Q9UKV0 1011 aa26.05■■□□□ 1.76
CLN3-219ENST00000565778 IRS2Q9Y4H2 1338 aa26.05■■□□□ 1.76
CLN3-219ENST00000565778 MMP14P50281 582 aa26.04■■□□□ 1.76
CLN3-219ENST00000565778 KIAA0825Q8IV33 1275 aa26.04■■□□□ 1.76
CLN3-219ENST00000565778 HHIPL1Q96JK4 782 aa26.04■■□□□ 1.76
CLN3-219ENST00000565778 RIPOR2Q9Y4F9 1068 aa26.04■■□□□ 1.76
CLN3-219ENST00000565778 RARSP54136 660 aaKnown RBP26.03■■□□□ 1.76
CLN3-219ENST00000565778 HUNKP57058 714 aa26.03■■□□□ 1.76
CLN3-219ENST00000565778 UBE4AQ14139 1066 aa26.03■■□□□ 1.76
CLN3-219ENST00000565778 NBPF9Q3BBW0 867 aa26.03■■□□□ 1.76
CLN3-219ENST00000565778 API5Q9BZZ5 524 aaKnown RBP26.03■■□□□ 1.76
CLN3-219ENST00000565778 GBA2Q9HCG7 927 aaPredicted RBP26.03■■□□□ 1.76
CLN3-219ENST00000565778 IL1R1P14778 569 aa26.02■■□□□ 1.76
CLN3-219ENST00000565778 BRPF1P55201 1214 aaPredicted RBP26.02■■□□□ 1.76
CLN3-219ENST00000565778 MROH5Q6ZUA9 1318 aa26.02■■□□□ 1.76
CLN3-219ENST00000565778 AOC2O75106 756 aa26.01■■□□□ 1.75
CLN3-219ENST00000565778 MAP2K2P36507 400 aa26.01■■□□□ 1.75
CLN3-219ENST00000565778 CTCFP49711 727 aaPredicted RBP26.01■■□□□ 1.75
CLN3-219ENST00000565778 PSME4Q14997 1843 aa26.01■■□□□ 1.75
CLN3-219ENST00000565778 CDCA5Q96FF9 252 aa26.01■■□□□ 1.75
CLN3-219ENST00000565778 POLR2AP24928 1970 aaKnown RBP26■■□□□ 1.75
CLN3-219ENST00000565778 PITPNM2Q9BZ72 1349 aa26■■□□□ 1.75
CLN3-219ENST00000565778 WNT10BO00744 389 aa26■■□□□ 1.75
CLN3-219ENST00000565778 LRRC24Q50LG9 513 aa26■■□□□ 1.75
CLN3-219ENST00000565778 METTL24Q5JXM2 366 aa26■■□□□ 1.75
CLN3-219ENST00000565778 BEGAINQ9BUH8 593 aa26■■□□□ 1.75
CLN3-219ENST00000565778 SCAF8Q9UPN6 1271 aaKnown RBP26■■□□□ 1.75
CLN3-219ENST00000565778 HIBADHP31937 336 aaKnown RBP25.99■■□□□ 1.75
CLN3-219ENST00000565778 TNS4Q8IZW8 715 aa25.99■■□□□ 1.75
CLN3-219ENST00000565778 KLHDC4Q8TBB5 520 aa25.99■■□□□ 1.75
CLN3-219ENST00000565778 SASH1O94885 1247 aa25.98■■□□□ 1.75
CLN3-219ENST00000565778 UBTFL1P0CB47 393 aaPredicted RBP25.98■■□□□ 1.75
CLN3-219ENST00000565778 GYG1P46976 350 aa25.98■■□□□ 1.75
CLN3-219ENST00000565778 HNRNPUQ00839 825 aaKnown RBP eCLIP25.98■■□□□ 1.75
CLN3-219ENST00000565778 JAG2Q9Y219 1238 aa25.98■■□□□ 1.75
CLN3-219ENST00000565778 F8W031 263 aaPredicted RBP25.97■■□□□ 1.75
CLN3-219ENST00000565778 CERS5Q8N5B7 392 aa25.97■■□□□ 1.75
CLN3-219ENST00000565778 FAM84BQ96KN1 310 aaPredicted RBP25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms