RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TAOK2Q9UL54 1235 aa15.47■□□□□ 0.07
CLN3-210ENST00000563874 TTLL5Q6EMB2 1281 aa15.46■□□□□ 0.07
CLN3-210ENST00000563874 ILDR1Q86SU0 546 aaPredicted RBP15.46■□□□□ 0.07
CLN3-210ENST00000563874 PAXBP1Q9Y5B6 917 aa15.46■□□□□ 0.07
CLN3-210ENST00000563874 A0A1B0GVL5 298 aa15.46■□□□□ 0.07
CLN3-210ENST00000563874 CAVIN2O95810 425 aa15.46■□□□□ 0.07
CLN3-210ENST00000563874 CDC25BP30305 580 aa15.46■□□□□ 0.07
CLN3-210ENST00000563874 NAA16Q6N069 864 aaPredicted RBP15.46■□□□□ 0.07
CLN3-210ENST00000563874 MRFAP1L1Q96HT8 127 aa15.46■□□□□ 0.07
CLN3-210ENST00000563874 SARM1Q6SZW1 724 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 RAB11FIP4Q86YS3 637 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 LLPHQ9BRT6 129 aaKnown RBP15.45■□□□□ 0.06
CLN3-210ENST00000563874 E7EWF7 191 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 FAM160A1Q05DH4 1040 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 PTPN14Q15678 1187 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 ENGASEQ8NFI3 743 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 SDF4Q9BRK5 362 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 PAG1Q9NWQ8 432 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 CTAGE5O15320 804 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 LRP10Q7Z4F1 713 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 TTC5Q8N0Z6 440 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 SYTL4Q96C24 671 aaPredicted RBP15.45■□□□□ 0.06
CLN3-210ENST00000563874 CTNNA3Q9UI47 895 aa15.45■□□□□ 0.06
CLN3-210ENST00000563874 MRC1P22897 1456 aa15.44■□□□□ 0.06
CLN3-210ENST00000563874 POLR3DP05423 398 aaPredicted RBP15.44■□□□□ 0.06
CLN3-210ENST00000563874 RABL6Q3YEC7 729 aaPredicted RBP15.44■□□□□ 0.06
CLN3-210ENST00000563874 ANO10Q9NW15 660 aa15.44■□□□□ 0.06
CLN3-210ENST00000563874 ZNF215Q9UL58 517 aaPredicted RBP15.44■□□□□ 0.06
CLN3-210ENST00000563874 OVOS2A0A0G2JMS6 1433 aa15.44■□□□□ 0.06
CLN3-210ENST00000563874 NPHP1O15259 732 aa15.44■□□□□ 0.06
CLN3-210ENST00000563874 KDM6AO15550 1401 aaPredicted RBP15.44■□□□□ 0.06
CLN3-210ENST00000563874 HMGB1P09429 215 aaKnown RBP15.44■□□□□ 0.06
CLN3-210ENST00000563874 HSPD1P10809 573 aaKnown RBP15.44■□□□□ 0.06
CLN3-210ENST00000563874 ERBB3P21860 1342 aa15.44■□□□□ 0.06
CLN3-210ENST00000563874 PDIA3P30101 505 aaKnown RBP15.44■□□□□ 0.06
CLN3-210ENST00000563874 EXOSC10Q01780 885 aaKnown RBP15.44■□□□□ 0.06
CLN3-210ENST00000563874 ZNF396Q96N95 335 aaPredicted RBP15.44■□□□□ 0.06
CLN3-210ENST00000563874 FMNL2Q96PY5 1086 aa15.44■□□□□ 0.06
CLN3-210ENST00000563874 GJB4Q9NTQ9 266 aa15.44■□□□□ 0.06
CLN3-210ENST00000563874 PCDHA7Q9UN72 937 aa15.44■□□□□ 0.06
CLN3-210ENST00000563874 HAND2P61296 217 aa15.43■□□□□ 0.06
CLN3-210ENST00000563874 CCZ1BP86790 482 aa15.43■□□□□ 0.06
CLN3-210ENST00000563874 CCZ1P86791 482 aaPredicted RBP15.43■□□□□ 0.06
CLN3-210ENST00000563874 CEP57L1Q8IYX8 460 aa15.43■□□□□ 0.06
CLN3-210ENST00000563874 ZNF594Q96JF6 807 aaPredicted RBP15.43■□□□□ 0.06
CLN3-210ENST00000563874 GTPBP4Q9BZE4 634 aaKnown RBP15.43■□□□□ 0.06
CLN3-210ENST00000563874 BIN1O00499 593 aa15.43■□□□□ 0.06
CLN3-210ENST00000563874 SNRPA1P09661 255 aaKnown RBP15.43■□□□□ 0.06
CLN3-210ENST00000563874 PHKG2P15735 406 aa15.43■□□□□ 0.06
CLN3-210ENST00000563874 SH3TC1Q8TE82 1336 aa15.42■□□□□ 0.06
CLN3-210ENST00000563874 RBM6P78332 1123 aaKnown RBP15.42■□□□□ 0.06
CLN3-210ENST00000563874 FDPSP14324 419 aaKnown RBP15.42■□□□□ 0.06
CLN3-210ENST00000563874 NDUFA8P51970 172 aa15.42■□□□□ 0.06
CLN3-210ENST00000563874 FEZ1Q99689 392 aa15.42■□□□□ 0.06
CLN3-210ENST00000563874 DPCR1Q3MIW9 517 aa15.42■□□□□ 0.06
CLN3-210ENST00000563874 OGFRQ9NZT2 677 aa15.42■□□□□ 0.06
CLN3-210ENST00000563874 CLIC4Q9Y696 253 aa15.42■□□□□ 0.06
CLN3-210ENST00000563874 CARMIL3Q8ND23 1372 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 MAST3O60307 1309 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 SF3A1Q15459 793 aaKnown RBP15.41■□□□□ 0.06
CLN3-210ENST00000563874 LRRC24Q50LG9 513 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 NYAP1Q6ZVC0 841 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 ATG9AQ7Z3C6 839 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 ANKLE2Q86XL3 938 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 MRPS27Q92552 414 aaKnown RBP15.41■□□□□ 0.06
CLN3-210ENST00000563874 SALL1Q9NSC2 1324 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 C5P01031 1676 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 HSP90AB3PQ58FF7 597 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 ISM2Q6H9L7 571 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 KRT28Q7Z3Y7 464 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 FMR1NBQ8N0W7 255 aaPredicted RBP15.41■□□□□ 0.06
CLN3-210ENST00000563874 DSCC1Q9BVC3 393 aa15.41■□□□□ 0.06
CLN3-210ENST00000563874 CGNQ9P2M7 1197 aaKnown RBP15.41■□□□□ 0.06
CLN3-210ENST00000563874 M0R2C6 588 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 SMC2O95347 1197 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 CSB-PGBD3P0DP91 1061 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 TATP17735 454 aaPredicted RBP15.4■□□□□ 0.06
CLN3-210ENST00000563874 FKBP4Q02790 459 aaKnown RBP eCLIP15.4■□□□□ 0.06
CLN3-210ENST00000563874 ZMYM1Q5SVZ6 1142 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 NBPF11Q86T75 865 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 CCAR2Q8N163 923 aaKnown RBP15.4■□□□□ 0.06
CLN3-210ENST00000563874 HELLSQ9NRZ9 838 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 NEMFO60524 1076 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 IFIT1P09914 478 aaKnown RBP15.4■□□□□ 0.06
CLN3-210ENST00000563874 CASP7P55210 303 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 SYCP1Q15431 976 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 FOXO4P98177 505 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 STK38Q15208 465 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 ZRSR1Q15695 479 aaKnown RBP15.4■□□□□ 0.06
CLN3-210ENST00000563874 ELF2Q15723 593 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 AGXT2Q9BYV1 514 aa15.4■□□□□ 0.06
CLN3-210ENST00000563874 RFX7Q2KHR2 1363 aa15.39■□□□□ 0.05
CLN3-210ENST00000563874 KMT5BQ4FZB7 885 aa15.39■□□□□ 0.05
CLN3-210ENST00000563874 NAT10Q9H0A0 1025 aaKnown RBP15.39■□□□□ 0.05
CLN3-210ENST00000563874 OSBP2Q969R2 916 aa15.39■□□□□ 0.05
CLN3-210ENST00000563874 PUS3Q9BZE2 481 aaKnown RBP15.39■□□□□ 0.05
CLN3-210ENST00000563874 XPO4Q9C0E2 1151 aaKnown RBP15.39■□□□□ 0.05
CLN3-210ENST00000563874 IFNKQ9P0W0 207 aa15.39■□□□□ 0.05
CLN3-210ENST00000563874 DDX41Q9UJV9 622 aaKnown RBP15.39■□□□□ 0.05
CLN3-210ENST00000563874 TTLL7Q6ZT98 887 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms