RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 COA1Q9GZY4 146 aa20.81■□□□□ 0.92
CLK3-207ENST00000562389 PA2G4Q9UQ80 394 aaKnown RBP20.81■□□□□ 0.92
CLK3-207ENST00000562389 ZNF646O15015 1829 aaPredicted RBP20.81■□□□□ 0.92
CLK3-207ENST00000562389 RAD17O75943 681 aa20.8■□□□□ 0.92
CLK3-207ENST00000562389 PDE8BO95263 885 aa20.8■□□□□ 0.92
CLK3-207ENST00000562389 VEGFAP15692 232 aaPredicted RBP20.8■□□□□ 0.92
CLK3-207ENST00000562389 ATP8B2P98198 1209 aa20.8■□□□□ 0.92
CLK3-207ENST00000562389 POLA2Q14181 598 aa20.8■□□□□ 0.92
CLK3-207ENST00000562389 SIL1Q9H173 461 aa20.8■□□□□ 0.92
CLK3-207ENST00000562389 GJA3Q9Y6H8 435 aa20.8■□□□□ 0.92
CLK3-207ENST00000562389 IQCA1LA6NCM1 817 aa20.79■□□□□ 0.92
CLK3-207ENST00000562389 IL15P40933 162 aaPredicted RBP20.79■□□□□ 0.92
CLK3-207ENST00000562389 SSH3Q8TE77 659 aa20.79■□□□□ 0.92
CLK3-207ENST00000562389 ZBTB40Q9NUA8 1239 aa20.79■□□□□ 0.92
CLK3-207ENST00000562389 CEP85Q6P2H3 762 aa20.78■□□□□ 0.92
CLK3-207ENST00000562389 PSMD14O00487 310 aa20.77■□□□□ 0.92
CLK3-207ENST00000562389 SCNN1DP51172 638 aa20.77■□□□□ 0.92
CLK3-207ENST00000562389 PUM3Q15397 648 aaKnown RBP20.77■□□□□ 0.92
CLK3-207ENST00000562389 KCNQ5Q9NR82 932 aa20.77■□□□□ 0.92
CLK3-207ENST00000562389 HACL1Q9UJ83 578 aa20.77■□□□□ 0.92
CLK3-207ENST00000562389 ZNF609O15014 1411 aa20.77■□□□□ 0.91
CLK3-207ENST00000562389 ARAP2Q8WZ64 1704 aa20.76■□□□□ 0.91
CLK3-207ENST00000562389 FGFR2P21802 821 aa20.76■□□□□ 0.91
CLK3-207ENST00000562389 ZNF804AQ7Z570 1209 aa20.76■□□□□ 0.91
CLK3-207ENST00000562389 CD209Q9NNX6 404 aa20.76■□□□□ 0.91
CLK3-207ENST00000562389 VIL1P09327 827 aaKnown RBP20.75■□□□□ 0.91
CLK3-207ENST00000562389 LMOD1P29536 600 aaPredicted RBP20.75■□□□□ 0.91
CLK3-207ENST00000562389 CEP126Q9P2H0 1117 aa20.75■□□□□ 0.91
CLK3-207ENST00000562389 USP17L3A6NCW0 530 aa20.74■□□□□ 0.91
CLK3-207ENST00000562389 USP17L4A6NCW7 530 aa20.74■□□□□ 0.91
CLK3-207ENST00000562389 IL1R1P14778 569 aa20.74■□□□□ 0.91
CLK3-207ENST00000562389 RPS12P25398 132 aaKnown RBP20.74■□□□□ 0.91
CLK3-207ENST00000562389 GMPSP49915 693 aaPredicted RBP20.74■□□□□ 0.91
CLK3-207ENST00000562389 USP17L1Q7RTZ2 530 aa20.74■□□□□ 0.91
CLK3-207ENST00000562389 C16orf71Q8IYS4 520 aaPredicted RBP20.74■□□□□ 0.91
CLK3-207ENST00000562389 LPIN2Q92539 896 aa20.74■□□□□ 0.91
CLK3-207ENST00000562389 TAF1DQ9H5J8 278 aaPredicted RBP20.74■□□□□ 0.91
CLK3-207ENST00000562389 GPRC5DQ9NZD1 345 aa20.74■□□□□ 0.91
CLK3-207ENST00000562389 ADAMTSL1Q8N6G6 1762 aa20.73■□□□□ 0.91
CLK3-207ENST00000562389 TOMM70O94826 608 aa20.73■□□□□ 0.91
CLK3-207ENST00000562389 IFIT1P09914 478 aaKnown RBP20.73■□□□□ 0.91
CLK3-207ENST00000562389 EPHX2P34913 555 aa20.73■□□□□ 0.91
CLK3-207ENST00000562389 RPAP2Q8IXW5 612 aaPredicted RBP20.73■□□□□ 0.91
CLK3-207ENST00000562389 DPF2Q92785 391 aa20.73■□□□□ 0.91
CLK3-207ENST00000562389 FAM84BQ96KN1 310 aaPredicted RBP20.73■□□□□ 0.91
CLK3-207ENST00000562389 SLC5A1P13866 664 aa20.72■□□□□ 0.91
CLK3-207ENST00000562389 HIBADHP31937 336 aaKnown RBP20.72■□□□□ 0.91
CLK3-207ENST00000562389 GYG1P46976 350 aa20.72■□□□□ 0.91
CLK3-207ENST00000562389 G3BP1Q13283 466 aaKnown RBP eCLIP20.72■□□□□ 0.91
CLK3-207ENST00000562389 STRIP1Q5VSL9 837 aa20.72■□□□□ 0.91
CLK3-207ENST00000562389 RSBN1LQ6PCB5 846 aaPredicted RBP20.72■□□□□ 0.91
CLK3-207ENST00000562389 NOP58Q9Y2X3 529 aaKnown RBP20.72■□□□□ 0.91
CLK3-207ENST00000562389 ZBTB12Q9Y330 459 aaPredicted RBP20.72■□□□□ 0.91
CLK3-207ENST00000562389 EPS15P42566 896 aa20.71■□□□□ 0.91
CLK3-207ENST00000562389 ATP2B3Q16720 1220 aa20.71■□□□□ 0.91
CLK3-207ENST00000562389 CAVIN4Q5BKX8 364 aa20.71■□□□□ 0.91
CLK3-207ENST00000562389 FBXO33Q7Z6M2 555 aa20.71■□□□□ 0.91
CLK3-207ENST00000562389 AGBL3Q8NEM8 1001 aa20.71■□□□□ 0.91
CLK3-207ENST00000562389 RBM46Q8TBY0 533 aaKnown RBP20.71■□□□□ 0.91
CLK3-207ENST00000562389 MYH13Q9UKX3 1938 aa20.7■□□□□ 0.91
CLK3-207ENST00000562389 TFCP2Q12800 502 aa20.7■□□□□ 0.9
CLK3-207ENST00000562389 DACT2Q5SW24 774 aa20.7■□□□□ 0.9
CLK3-207ENST00000562389 PNMA8AQ86V59 439 aaPredicted RBP20.7■□□□□ 0.9
CLK3-207ENST00000562389 TDRD7Q8NHU6 1098 aaKnown RBP20.7■□□□□ 0.9
CLK3-207ENST00000562389 HMMRO75330 724 aa20.69■□□□□ 0.9
CLK3-207ENST00000562389 SURF6O75683 361 aaKnown RBP20.69■□□□□ 0.9
CLK3-207ENST00000562389 TTLL5Q6EMB2 1281 aa20.69■□□□□ 0.9
CLK3-207ENST00000562389 VPS37DQ86XT2 251 aa20.69■□□□□ 0.9
CLK3-207ENST00000562389 GMLQ99445 158 aa20.69■□□□□ 0.9
CLK3-207ENST00000562389 ADARB2Q9NS39 739 aaKnown RBP20.69■□□□□ 0.9
CLK3-207ENST00000562389 CNOT7Q9UIV1 285 aaKnown RBP20.69■□□□□ 0.9
CLK3-207ENST00000562389 AKAP2Q9Y2D5 859 aa20.69■□□□□ 0.9
CLK3-207ENST00000562389 MYO3BQ8WXR4 1341 aa20.69■□□□□ 0.9
CLK3-207ENST00000562389 SASH1O94885 1247 aa20.68■□□□□ 0.9
CLK3-207ENST00000562389 GTF2IP78347 998 aa20.68■□□□□ 0.9
CLK3-207ENST00000562389 USP50Q70EL3 339 aaPredicted RBP20.68■□□□□ 0.9
CLK3-207ENST00000562389 SIRT2Q8IXJ6 389 aa20.68■□□□□ 0.9
CLK3-207ENST00000562389 MICALL2Q8IY33 904 aa20.68■□□□□ 0.9
CLK3-207ENST00000562389 FBXW7Q969H0 707 aa20.68■□□□□ 0.9
CLK3-207ENST00000562389 BCAMP50895 628 aa20.67■□□□□ 0.9
CLK3-207ENST00000562389 C1QTNF8P60827 252 aa20.67■□□□□ 0.9
CLK3-207ENST00000562389 OS9Q13438 667 aaPredicted RBP20.67■□□□□ 0.9
CLK3-207ENST00000562389 LDHDQ86WU2 507 aa20.67■□□□□ 0.9
CLK3-207ENST00000562389 SMC1BQ8NDV3 1235 aa20.67■□□□□ 0.9
CLK3-207ENST00000562389 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.67■□□□□ 0.9
CLK3-207ENST00000562389 FAM205AQ6ZU69 1335 aa20.67■□□□□ 0.9
CLK3-207ENST00000562389 SHTN1A0MZ66 631 aa20.66■□□□□ 0.9
CLK3-207ENST00000562389 H7C1D1 291 aa20.66■□□□□ 0.9
CLK3-207ENST00000562389 POTEIP0CG38 1075 aa20.66■□□□□ 0.9
CLK3-207ENST00000562389 POTEJP0CG39 1038 aa20.66■□□□□ 0.9
CLK3-207ENST00000562389 FKBP1AP62942 108 aaKnown RBP20.66■□□□□ 0.9
CLK3-207ENST00000562389 FSTL1Q12841 308 aa20.66■□□□□ 0.9
CLK3-207ENST00000562389 EAPPQ56P03 285 aaPredicted RBP20.66■□□□□ 0.9
CLK3-207ENST00000562389 CRBNQ96SW2 442 aa20.66■□□□□ 0.9
CLK3-207ENST00000562389 A0A1B0GUL7 405 aa20.65■□□□□ 0.9
CLK3-207ENST00000562389 HSP90AB4PQ58FF6 505 aa20.65■□□□□ 0.9
CLK3-207ENST00000562389 MXD3Q9BW11 206 aa20.65■□□□□ 0.9
CLK3-207ENST00000562389 GPR108Q9NPR9 543 aa20.65■□□□□ 0.9
CLK3-207ENST00000562389 ZBTB22O15209 634 aa20.64■□□□□ 0.89
CLK3-207ENST00000562389 MMP14P50281 582 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms