RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 CCT4P50991 539 aaKnown RBP11.74□□□□□ -0.53
HDDC3-204ENST00000559834 TWISTNBQ3B726 338 aaPredicted RBP11.74□□□□□ -0.53
HDDC3-204ENST00000559834 STRIP1Q5VSL9 837 aa11.74□□□□□ -0.53
HDDC3-204ENST00000559834 MPHOSPH8Q99549 860 aa11.74□□□□□ -0.53
HDDC3-204ENST00000559834 ANKRD2Q9GZV1 360 aa11.74□□□□□ -0.53
HDDC3-204ENST00000559834 GREM2Q9H772 168 aa11.74□□□□□ -0.53
HDDC3-204ENST00000559834 ASTN2O75129 1339 aaPredicted RBP11.74□□□□□ -0.53
HDDC3-204ENST00000559834 MYO3BQ8WXR4 1341 aa11.74□□□□□ -0.53
HDDC3-204ENST00000559834 NEURL1BA8MQ27 555 aa11.73□□□□□ -0.53
HDDC3-204ENST00000559834 CWF19L2Q2TBE0 894 aaKnown RBP11.73□□□□□ -0.53
HDDC3-204ENST00000559834 UBE3BQ7Z3V4 1068 aa11.73□□□□□ -0.53
HDDC3-204ENST00000559834 WWC1Q8IX03 1113 aa11.73□□□□□ -0.53
HDDC3-204ENST00000559834 TSR2Q969E8 191 aaKnown RBP11.73□□□□□ -0.53
HDDC3-204ENST00000559834 FBXW7Q969H0 707 aa11.73□□□□□ -0.53
HDDC3-204ENST00000559834 MYH16Q9H6N6 1097 aa11.73□□□□□ -0.53
HDDC3-204ENST00000559834 MED23Q9ULK4 1368 aa11.73□□□□□ -0.53
HDDC3-204ENST00000559834 COL4A1P02462 1669 aa11.72□□□□□ -0.53
HDDC3-204ENST00000559834 TTLL12Q14166 644 aaPredicted RBP11.72□□□□□ -0.53
HDDC3-204ENST00000559834 GCKRQ14397 625 aa11.72□□□□□ -0.53
HDDC3-204ENST00000559834 NCBP3Q53F19 620 aaKnown RBP11.72□□□□□ -0.53
HDDC3-204ENST00000559834 DACT2Q5SW24 774 aa11.72□□□□□ -0.53
HDDC3-204ENST00000559834 TTLL5Q6EMB2 1281 aa11.72□□□□□ -0.53
HDDC3-204ENST00000559834 PLA2G12BQ9BX93 195 aa11.72□□□□□ -0.53
HDDC3-204ENST00000559834 HDAC9Q9UKV0 1011 aa11.72□□□□□ -0.53
HDDC3-204ENST00000559834 ZNF804BA4D1E1 1349 aa11.71□□□□□ -0.53
HDDC3-204ENST00000559834 IL16Q14005 1332 aa11.71□□□□□ -0.53
HDDC3-204ENST00000559834 SCN9AQ15858 1988 aa11.71□□□□□ -0.53
HDDC3-204ENST00000559834 WNT10BO00744 389 aa11.71□□□□□ -0.53
HDDC3-204ENST00000559834 ITGA6P23229 1130 aa11.71□□□□□ -0.53
HDDC3-204ENST00000559834 KCNJ4P48050 445 aa11.71□□□□□ -0.53
HDDC3-204ENST00000559834 NBPF9Q3BBW0 867 aa11.71□□□□□ -0.53
HDDC3-204ENST00000559834 RASAL3Q86YV0 1011 aa11.71□□□□□ -0.53
HDDC3-204ENST00000559834 LINS1Q8NG48 757 aa11.71□□□□□ -0.53
HDDC3-204ENST00000559834 WTIPA6NIX2 430 aaPredicted RBP11.7□□□□□ -0.54
HDDC3-204ENST00000559834 UBE2Q2LH0YL09 131 aa11.7□□□□□ -0.54
HDDC3-204ENST00000559834 CSF1RP07333 972 aa11.7□□□□□ -0.54
HDDC3-204ENST00000559834 FLIIQ13045 1269 aa11.7□□□□□ -0.54
HDDC3-204ENST00000559834 FKBP5Q13451 457 aaPredicted RBP11.7□□□□□ -0.54
HDDC3-204ENST00000559834 PKN2Q16513 984 aaKnown RBP11.7□□□□□ -0.54
HDDC3-204ENST00000559834 PRAMEF18Q5VWM3 479 aa11.7□□□□□ -0.54
HDDC3-204ENST00000559834 G2E3Q7L622 706 aa11.7□□□□□ -0.54
HDDC3-204ENST00000559834 ARMC9Q7Z3E5 817 aa11.7□□□□□ -0.54
HDDC3-204ENST00000559834 CTU1Q7Z7A3 348 aaKnown RBP11.7□□□□□ -0.54
HDDC3-204ENST00000559834 DNAAF4Q8WXU2 420 aa11.7□□□□□ -0.54
HDDC3-204ENST00000559834 ANKRD18BA2A2Z9 1011 aa11.69□□□□□ -0.54
HDDC3-204ENST00000559834 GTF2IP78347 998 aa11.69□□□□□ -0.54
HDDC3-204ENST00000559834 MOB2Q70IA6 237 aa11.69□□□□□ -0.54
HDDC3-204ENST00000559834 TXNRD3Q86VQ6 643 aa11.69□□□□□ -0.54
HDDC3-204ENST00000559834 APOBEC3FQ8IUX4 373 aaKnown RBP11.69□□□□□ -0.54
HDDC3-204ENST00000559834 MXD3Q9BW11 206 aa11.69□□□□□ -0.54
HDDC3-204ENST00000559834 SCAF8Q9UPN6 1271 aaKnown RBP11.69□□□□□ -0.54
HDDC3-204ENST00000559834 TM4SF4P48230 202 aa11.68□□□□□ -0.54
HDDC3-204ENST00000559834 CHRNDQ07001 517 aa11.68□□□□□ -0.54
HDDC3-204ENST00000559834 IFIT5Q13325 482 aaKnown RBP11.68□□□□□ -0.54
HDDC3-204ENST00000559834 KIAA0825Q8IV33 1275 aa11.68□□□□□ -0.54
HDDC3-204ENST00000559834 WDR63Q8IWG1 891 aa11.68□□□□□ -0.54
HDDC3-204ENST00000559834 AKAP11Q9UKA4 1901 aa11.67□□□□□ -0.54
HDDC3-204ENST00000559834 VAMP4O75379 141 aa11.67□□□□□ -0.54
HDDC3-204ENST00000559834 TBC1D8O95759 1140 aa11.67□□□□□ -0.54
HDDC3-204ENST00000559834 CASP7P55210 303 aa11.67□□□□□ -0.54
HDDC3-204ENST00000559834 SREBF2Q12772 1141 aa11.67□□□□□ -0.54
HDDC3-204ENST00000559834 DLGAP5Q15398 846 aa11.67□□□□□ -0.54
HDDC3-204ENST00000559834 CD209Q9NNX6 404 aa11.67□□□□□ -0.54
HDDC3-204ENST00000559834 PAPPA2Q9BXP8 1791 aa11.67□□□□□ -0.54
HDDC3-204ENST00000559834 MYO1BO43795 1136 aa11.66□□□□□ -0.54
HDDC3-204ENST00000559834 SASH1O94885 1247 aa11.66□□□□□ -0.54
HDDC3-204ENST00000559834 INHBEP58166 350 aa11.66□□□□□ -0.54
HDDC3-204ENST00000559834 CCDC184Q52MB2 194 aa11.66□□□□□ -0.54
HDDC3-204ENST00000559834 NOM1Q5C9Z4 860 aaKnown RBP11.66□□□□□ -0.54
HDDC3-204ENST00000559834 C15orf52Q6ZUT6 534 aaKnown RBP11.66□□□□□ -0.54
HDDC3-204ENST00000559834 CHMP3Q9Y3E7 222 aa11.66□□□□□ -0.54
HDDC3-204ENST00000559834 SLC34A2O95436 690 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 ALDH1A1P00352 501 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 KLRK1P26718 216 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 PTPN12Q05209 780 aaKnown RBP11.65□□□□□ -0.54
HDDC3-204ENST00000559834 PRKG1Q13976 671 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 CCDC57Q2TAC2 916 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 SUPT20HL1Q3ZLR7 823 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 TAF7LQ5H9L4 462 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 LDLRAD1Q5T700 205 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 ZNF804AQ7Z570 1209 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 MTMR14Q8NCE2 650 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 ZNF296Q8WUU4 475 aaPredicted RBP11.65□□□□□ -0.54
HDDC3-204ENST00000559834 SLC10A4Q96EP9 437 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 ZBED3Q96IU2 234 aaPredicted RBP11.65□□□□□ -0.54
HDDC3-204ENST00000559834 DEFB129Q9H1M3 183 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 MRS2Q9HD23 443 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 ANGEL1Q9UNK9 670 aaKnown RBP11.65□□□□□ -0.54
HDDC3-204ENST00000559834 PPP2R3BQ9Y5P8 575 aa11.65□□□□□ -0.54
HDDC3-204ENST00000559834 PSME4Q14997 1843 aa11.65□□□□□ -0.55
HDDC3-204ENST00000559834 FANCIQ9NVI1 1328 aa11.64□□□□□ -0.55
HDDC3-204ENST00000559834 UNCXA6NJT0 531 aa11.64□□□□□ -0.55
HDDC3-204ENST00000559834 GPR25O00155 361 aa11.64□□□□□ -0.55
HDDC3-204ENST00000559834 PPP1R12BO60237 982 aaPredicted RBP11.64□□□□□ -0.55
HDDC3-204ENST00000559834 TAF5LO75529 589 aa11.64□□□□□ -0.55
HDDC3-204ENST00000559834 SOX10P56693 466 aa11.64□□□□□ -0.55
HDDC3-204ENST00000559834 FKBP1AP62942 108 aaKnown RBP11.64□□□□□ -0.55
HDDC3-204ENST00000559834 FOXO4P98177 505 aa11.64□□□□□ -0.55
HDDC3-204ENST00000559834 EXOSC9Q06265 439 aaKnown RBP11.64□□□□□ -0.55
HDDC3-204ENST00000559834 MKRN3Q13064 507 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms