RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SIK1P57059 783 aa12.61□□□□□ -0.39
CUX1-217ENST00000558836 KRT32Q14532 448 aa12.61□□□□□ -0.39
CUX1-217ENST00000558836 ANKRD1Q15327 319 aa12.61□□□□□ -0.39
CUX1-217ENST00000558836 TFIP11Q9UBB9 837 aaKnown RBP12.61□□□□□ -0.39
CUX1-217ENST00000558836 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.61□□□□□ -0.39
CUX1-217ENST00000558836 COL14A1Q05707 1796 aaKnown RBP12.61□□□□□ -0.39
CUX1-217ENST00000558836 FAM98CQ17RN3 349 aaKnown RBP12.61□□□□□ -0.39
CUX1-217ENST00000558836 PTF1AQ7RTS3 328 aa12.61□□□□□ -0.39
CUX1-217ENST00000558836 FAM43AQ8N2R8 423 aa12.61□□□□□ -0.39
CUX1-217ENST00000558836 NCOA5Q9HCD5 579 aaKnown RBP12.61□□□□□ -0.39
CUX1-217ENST00000558836 E7EWF7 191 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 FAM182BQ5T319 152 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 LRSAM1Q6UWE0 723 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 RAB11FIP4Q86YS3 637 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 PDE8AO60658 829 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 PHKA1P46020 1223 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 EIF5P55010 431 aaKnown RBP12.6□□□□□ -0.39
CUX1-217ENST00000558836 SCRN1Q12765 414 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 TRIM44Q96DX7 344 aaPredicted RBP12.6□□□□□ -0.39
CUX1-217ENST00000558836 TAOK2Q9UL54 1235 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 RIC1Q4ADV7 1423 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 FOXP2O15409 715 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 IDH1O75874 414 aaKnown RBP12.6□□□□□ -0.39
CUX1-217ENST00000558836 ZNF34Q8IZ26 560 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 CCDC87Q9NVE4 849 aa12.6□□□□□ -0.39
CUX1-217ENST00000558836 PDE8BO95263 885 aa12.59□□□□□ -0.39
CUX1-217ENST00000558836 DHX32Q7L7V1 743 aaKnown RBP12.59□□□□□ -0.39
CUX1-217ENST00000558836 GTF3C6Q969F1 213 aa12.59□□□□□ -0.39
CUX1-217ENST00000558836 DENND2AQ9ULE3 1009 aa12.59□□□□□ -0.39
CUX1-217ENST00000558836 CDHR2Q9BYE9 1310 aa12.59□□□□□ -0.39
CUX1-217ENST00000558836 FGAP02671 866 aa12.59□□□□□ -0.39
CUX1-217ENST00000558836 C8orf37Q96NL8 207 aa12.59□□□□□ -0.39
CUX1-217ENST00000558836 DSCC1Q9BVC3 393 aa12.59□□□□□ -0.39
CUX1-217ENST00000558836 NIP7Q9Y221 180 aaKnown RBP eCLIP12.59□□□□□ -0.39
CUX1-217ENST00000558836 NUP98P52948 1817 aa12.58□□□□□ -0.39
CUX1-217ENST00000558836 SLC9C2Q5TAH2 1124 aa12.58□□□□□ -0.4
CUX1-217ENST00000558836 ATP6V1DQ9Y5K8 247 aa12.58□□□□□ -0.4
CUX1-217ENST00000558836 WTIPA6NIX2 430 aaPredicted RBP12.58□□□□□ -0.4
CUX1-217ENST00000558836 ERVV-1B6SEH8 477 aa12.58□□□□□ -0.4
CUX1-217ENST00000558836 CCDC102BQ68D86 513 aa12.58□□□□□ -0.4
CUX1-217ENST00000558836 BICDL1Q6ZP65 573 aa12.58□□□□□ -0.4
CUX1-217ENST00000558836 VGLL2Q8N8G2 317 aa12.58□□□□□ -0.4
CUX1-217ENST00000558836 ANP32BQ92688 251 aaKnown RBP12.58□□□□□ -0.4
CUX1-217ENST00000558836 PIH1D3Q9NQM4 214 aaKnown RBP12.58□□□□□ -0.4
CUX1-217ENST00000558836 RFX7Q2KHR2 1363 aa12.58□□□□□ -0.4
CUX1-217ENST00000558836 SLIT2O94813 1529 aa12.58□□□□□ -0.4
CUX1-217ENST00000558836 DOT1LQ8TEK3 1739 aa12.58□□□□□ -0.4
CUX1-217ENST00000558836 GPAA1O43292 621 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 CEBPZQ03701 1054 aaKnown RBP12.57□□□□□ -0.4
CUX1-217ENST00000558836 IQSEC3Q9UPP2 1182 aaPredicted RBP12.57□□□□□ -0.4
CUX1-217ENST00000558836 LRP6O75581 1613 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 APPP05067 770 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 GUCY1B3Q02153 619 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 TTC6Q86TZ1 520 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 NKX2-3Q8TAU0 364 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 MPHOSPH8Q99549 860 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 SPATA31A5Q5VU36 1347 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 SPATA31A7Q8IWB4 1347 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 UBE2HP62256 183 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 GIMAP6Q6P9H5 292 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 ALDH8A1Q9H2A2 487 aaPredicted RBP12.57□□□□□ -0.4
CUX1-217ENST00000558836 FBXO3Q9UK99 471 aa12.57□□□□□ -0.4
CUX1-217ENST00000558836 CAMTA2O94983 1202 aa12.56□□□□□ -0.4
CUX1-217ENST00000558836 PDIA4P13667 645 aaKnown RBP12.56□□□□□ -0.4
CUX1-217ENST00000558836 EXOSC10Q01780 885 aaKnown RBP12.56□□□□□ -0.4
CUX1-217ENST00000558836 MPNDQ8N594 471 aa12.56□□□□□ -0.4
CUX1-217ENST00000558836 UTP14AQ9BVJ6 771 aaKnown RBP12.56□□□□□ -0.4
CUX1-217ENST00000558836 WWC3Q9ULE0 1092 aa12.56□□□□□ -0.4
CUX1-217ENST00000558836 MYH14Q7Z406 1995 aaKnown RBP12.56□□□□□ -0.4
CUX1-217ENST00000558836 CTDNEP1O95476 244 aa12.56□□□□□ -0.4
CUX1-217ENST00000558836 CCDC24Q8N4L8 307 aa12.56□□□□□ -0.4
CUX1-217ENST00000558836 FAM184AQ8NB25 1140 aa12.56□□□□□ -0.4
CUX1-217ENST00000558836 TMEM87AQ8NBN3 555 aa12.56□□□□□ -0.4
CUX1-217ENST00000558836 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.56□□□□□ -0.4
CUX1-217ENST00000558836 APPBP2Q92624 585 aa12.56□□□□□ -0.4
CUX1-217ENST00000558836 SYAP1Q96A49 352 aaPredicted RBP12.56□□□□□ -0.4
CUX1-217ENST00000558836 NGLY1Q96IV0 654 aa12.56□□□□□ -0.4
CUX1-217ENST00000558836 INCENPQ9NQS7 918 aa12.56□□□□□ -0.4
CUX1-217ENST00000558836 H3BQV1 296 aa12.55□□□□□ -0.4
CUX1-217ENST00000558836 PDCP20941 246 aa12.55□□□□□ -0.4
CUX1-217ENST00000558836 IFFO2Q5TF58 517 aa12.55□□□□□ -0.4
CUX1-217ENST00000558836 STK11IPQ8N1F8 1099 aa12.55□□□□□ -0.4
CUX1-217ENST00000558836 TSPY26PQ9H489 355 aa12.55□□□□□ -0.4
CUX1-217ENST00000558836 MYO5AQ9Y4I1 1855 aaKnown RBP12.55□□□□□ -0.4
CUX1-217ENST00000558836 CCDC173Q0VFZ6 552 aa12.55□□□□□ -0.4
CUX1-217ENST00000558836 CAMK4Q16566 473 aa12.55□□□□□ -0.4
CUX1-217ENST00000558836 CDCA7Q9BWT1 371 aaPredicted RBP12.55□□□□□ -0.4
CUX1-217ENST00000558836 ZNF532Q9HCE3 1301 aa12.55□□□□□ -0.4
CUX1-217ENST00000558836 KDM4AO75164 1064 aa12.54□□□□□ -0.4
CUX1-217ENST00000558836 BCAMP50895 628 aa12.54□□□□□ -0.4
CUX1-217ENST00000558836 KRT85P78386 507 aa12.54□□□□□ -0.4
CUX1-217ENST00000558836 FTOQ9C0B1 505 aaKnown RBP eCLIP12.54□□□□□ -0.4
CUX1-217ENST00000558836 THRAP3Q9Y2W1 955 aaKnown RBP12.54□□□□□ -0.4
CUX1-217ENST00000558836 LAMA4Q16363 1823 aa12.54□□□□□ -0.4
CUX1-217ENST00000558836 ESPNB1AK53 854 aa12.54□□□□□ -0.4
CUX1-217ENST00000558836 HMGB1P09429 215 aaKnown RBP12.54□□□□□ -0.4
CUX1-217ENST00000558836 IMMTQ16891 758 aaKnown RBP12.54□□□□□ -0.4
CUX1-217ENST00000558836 C3orf67Q6ZVT6 689 aa12.54□□□□□ -0.4
CUX1-217ENST00000558836 NSUN7Q8NE18 718 aaKnown RBP12.54□□□□□ -0.4
CUX1-217ENST00000558836 AHDC1Q5TGY3 1603 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms