RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 C7orf43Q8WVR3 580 aa11.83□□□□□ -0.52
CUX1-216ENST00000558469 NEUROD6Q96NK8 337 aa11.83□□□□□ -0.52
CUX1-216ENST00000558469 LNPKQ9C0E8 428 aa11.83□□□□□ -0.52
CUX1-216ENST00000558469 FPGT-TNNI3KV9GXZ4 949 aa11.83□□□□□ -0.52
CUX1-216ENST00000558469 CHD4Q14839 1912 aa11.83□□□□□ -0.52
CUX1-216ENST00000558469 SPDYE4A6NLX3 237 aa11.82□□□□□ -0.52
CUX1-216ENST00000558469 IFIT2P09913 472 aaKnown RBP11.82□□□□□ -0.52
CUX1-216ENST00000558469 PUM3Q15397 648 aaKnown RBP11.82□□□□□ -0.52
CUX1-216ENST00000558469 DPP8Q6V1X1 898 aaPredicted RBP11.82□□□□□ -0.52
CUX1-216ENST00000558469 AACSQ86V21 672 aa11.82□□□□□ -0.52
CUX1-216ENST00000558469 C16orf71Q8IYS4 520 aaPredicted RBP11.82□□□□□ -0.52
CUX1-216ENST00000558469 EAF2Q96CJ1 260 aaPredicted RBP11.82□□□□□ -0.52
CUX1-216ENST00000558469 CCDC8Q9H0W5 538 aaPredicted RBP11.82□□□□□ -0.52
CUX1-216ENST00000558469 GPR108Q9NPR9 543 aa11.82□□□□□ -0.52
CUX1-216ENST00000558469 PODXL2Q9NZ53 605 aa11.82□□□□□ -0.52
CUX1-216ENST00000558469 GGA1Q9UJY5 639 aa11.82□□□□□ -0.52
CUX1-216ENST00000558469 ZNF609O15014 1411 aa11.82□□□□□ -0.52
CUX1-216ENST00000558469 GOLGB1Q14789 3259 aaKnown RBP11.82□□□□□ -0.52
CUX1-216ENST00000558469 DUOX1Q9NRD9 1551 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 A0A1B0GUL7 405 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 C6orf229H3BNL8 230 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 UFL1O94874 794 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 SLC5A1P13866 664 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 FGFR2P21802 821 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 ATP2B4P23634 1241 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 UBE4AQ14139 1066 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 CCDC93Q567U6 631 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 SOGA3Q5TF21 947 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 CC2D2BQ6DHV5 1058 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 RTKN2Q8IZC4 609 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 LPIN2Q92539 896 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 POLLQ9UGP5 575 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 LEMD3Q9Y2U8 911 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 AK9Q5TCS8 1911 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 ZNF804BA4D1E1 1349 aa11.81□□□□□ -0.52
CUX1-216ENST00000558469 SBF1O95248 1867 aa11.8□□□□□ -0.52
CUX1-216ENST00000558469 SRCAPQ6ZRS2 3230 aa11.8□□□□□ -0.52
CUX1-216ENST00000558469 IFIT1P09914 478 aaKnown RBP11.8□□□□□ -0.52
CUX1-216ENST00000558469 GRIPAP1Q4V328 841 aa11.8□□□□□ -0.52
CUX1-216ENST00000558469 SKAP1Q86WV1 359 aa11.8□□□□□ -0.52
CUX1-216ENST00000558469 PELP1Q8IZL8 1130 aaKnown RBP11.8□□□□□ -0.52
CUX1-216ENST00000558469 TBC1D16Q8TBP0 767 aa11.8□□□□□ -0.52
CUX1-216ENST00000558469 XAGE2Q96GT9 111 aa11.8□□□□□ -0.52
CUX1-216ENST00000558469 GPR101Q96P66 508 aaPredicted RBP11.8□□□□□ -0.52
CUX1-216ENST00000558469 TLR7Q9NYK1 1049 aaKnown RBP11.8□□□□□ -0.52
CUX1-216ENST00000558469 SNED1Q8TER0 1413 aa11.79□□□□□ -0.52
CUX1-216ENST00000558469 PDE4AP27815 886 aa11.79□□□□□ -0.52
CUX1-216ENST00000558469 ADORA1P30542 326 aa11.79□□□□□ -0.52
CUX1-216ENST00000558469 GORABQ5T7V8 394 aa11.79□□□□□ -0.52
CUX1-216ENST00000558469 PIP4P2Q8N4L2 257 aa11.79□□□□□ -0.52
CUX1-216ENST00000558469 OTUD7AQ8TE49 926 aaPredicted RBP11.79□□□□□ -0.52
CUX1-216ENST00000558469 DBNDD2Q9BQY9 259 aa11.79□□□□□ -0.52
CUX1-216ENST00000558469 DBNLQ9UJU6 430 aaKnown RBP11.79□□□□□ -0.52
CUX1-216ENST00000558469 AKAP11Q9UKA4 1901 aa11.79□□□□□ -0.52
CUX1-216ENST00000558469 MYO5AQ9Y4I1 1855 aaKnown RBP11.78□□□□□ -0.52
CUX1-216ENST00000558469 DICER1Q9UPY3 1922 aaKnown RBP11.78□□□□□ -0.52
CUX1-216ENST00000558469 RIMBP2O15034 1052 aa11.78□□□□□ -0.52
CUX1-216ENST00000558469 KLRK1P26718 216 aa11.78□□□□□ -0.52
CUX1-216ENST00000558469 TXNRD3Q86VQ6 643 aa11.78□□□□□ -0.52
CUX1-216ENST00000558469 SUPT20HQ8NEM7 779 aa11.78□□□□□ -0.52
CUX1-216ENST00000558469 RTFDC1Q9BY42 306 aaPredicted RBP11.78□□□□□ -0.52
CUX1-216ENST00000558469 YBX3P16989 372 aaKnown RBP eCLIP11.77□□□□□ -0.53
CUX1-216ENST00000558469 MX1P20591 662 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 GYG1P46976 350 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 RGS3P49796 1198 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 BCAMP50895 628 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 FKBP4Q02790 459 aaKnown RBP eCLIP11.77□□□□□ -0.53
CUX1-216ENST00000558469 WASHC4Q2M389 1173 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 CAVIN4Q5BKX8 364 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 VPS37DQ86XT2 251 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 PLEKHM2Q8IWE5 1019 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 PSMD1Q99460 953 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 EYA3Q99504 573 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 ZC3H12CQ9C0D7 883 aaKnown RBP11.77□□□□□ -0.53
CUX1-216ENST00000558469 IRS2Q9Y4H2 1338 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 MED23Q9ULK4 1368 aa11.77□□□□□ -0.53
CUX1-216ENST00000558469 FXR2P51116 673 aaKnown RBP eCLIP11.76□□□□□ -0.53
CUX1-216ENST00000558469 PDE1AP54750 535 aa11.76□□□□□ -0.53
CUX1-216ENST00000558469 GPR162Q16538 588 aa11.76□□□□□ -0.53
CUX1-216ENST00000558469 AOC3Q16853 763 aa11.76□□□□□ -0.53
CUX1-216ENST00000558469 CCDC158Q5M9N0 1113 aa11.76□□□□□ -0.53
CUX1-216ENST00000558469 TTC39AQ5SRH9 613 aa11.76□□□□□ -0.53
CUX1-216ENST00000558469 TSHZ3Q63HK5 1081 aa11.76□□□□□ -0.53
CUX1-216ENST00000558469 CCDC102BQ68D86 513 aa11.76□□□□□ -0.53
CUX1-216ENST00000558469 ARHGAP27Q6ZUM4 889 aa11.76□□□□□ -0.53
CUX1-216ENST00000558469 C15orf52Q6ZUT6 534 aaKnown RBP11.76□□□□□ -0.53
CUX1-216ENST00000558469 GPATCH3Q96I76 525 aa11.76□□□□□ -0.53
CUX1-216ENST00000558469 FAM84BQ96KN1 310 aaPredicted RBP11.76□□□□□ -0.53
CUX1-216ENST00000558469 SALL3Q9BXA9 1300 aa11.76□□□□□ -0.53
CUX1-216ENST00000558469 PSME4Q14997 1843 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 G3V3G9 751 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 NFKBIEO00221 500 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 HIBADHP31937 336 aaKnown RBP11.75□□□□□ -0.53
CUX1-216ENST00000558469 PHKA1P46020 1223 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 DCAF8Q5TAQ9 597 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 ZNF804AQ7Z570 1209 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 FBXO33Q7Z6M2 555 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 TAOK3Q9H2K8 898 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 ZNF277Q9NRM2 450 aaPredicted RBP11.75□□□□□ -0.53
CUX1-216ENST00000558469 ECHDC1Q9NTX5 307 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms