RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ZNF804AQ7Z570 1209 aa10.83□□□□□ -0.68
USP3-208ENST00000558285 FTSJ3Q8IY81 847 aaKnown RBP10.83□□□□□ -0.68
USP3-208ENST00000558285 OGFOD1Q8N543 542 aa10.83□□□□□ -0.68
USP3-208ENST00000558285 ZC3H15Q8WU90 426 aaKnown RBP10.83□□□□□ -0.68
USP3-208ENST00000558285 BBXQ8WY36 941 aaPredicted RBP10.83□□□□□ -0.68
USP3-208ENST00000558285 CHMP4BQ9H444 224 aaKnown RBP10.83□□□□□ -0.68
USP3-208ENST00000558285 GPRC5DQ9NZD1 345 aa10.83□□□□□ -0.68
USP3-208ENST00000558285 POLLQ9UGP5 575 aa10.83□□□□□ -0.68
USP3-208ENST00000558285 ZNF804BA4D1E1 1349 aa10.83□□□□□ -0.68
USP3-208ENST00000558285 MROH5Q6ZUA9 1318 aa10.83□□□□□ -0.68
USP3-208ENST00000558285 TULP1O00294 542 aaPredicted RBP10.82□□□□□ -0.68
USP3-208ENST00000558285 RAD17O75943 681 aa10.82□□□□□ -0.68
USP3-208ENST00000558285 ZKSCAN2Q63HK3 967 aa10.82□□□□□ -0.68
USP3-208ENST00000558285 POTEGQ6S5H5 508 aa10.82□□□□□ -0.68
USP3-208ENST00000558285 AGBL3Q8NEM8 1001 aa10.82□□□□□ -0.68
USP3-208ENST00000558285 DBNDD1Q9H9R9 158 aa10.82□□□□□ -0.68
USP3-208ENST00000558285 MYH3P11055 1940 aa10.82□□□□□ -0.68
USP3-208ENST00000558285 USP17L3A6NCW0 530 aa10.81□□□□□ -0.68
USP3-208ENST00000558285 USP17L4A6NCW7 530 aa10.81□□□□□ -0.68
USP3-208ENST00000558285 GMPSP49915 693 aaPredicted RBP10.81□□□□□ -0.68
USP3-208ENST00000558285 FOXO4P98177 505 aa10.81□□□□□ -0.68
USP3-208ENST00000558285 CHRNDQ07001 517 aa10.81□□□□□ -0.68
USP3-208ENST00000558285 USP17L1Q7RTZ2 530 aa10.81□□□□□ -0.68
USP3-208ENST00000558285 FRAT1Q92837 279 aaPredicted RBP10.81□□□□□ -0.68
USP3-208ENST00000558285 HDAC9Q9UKV0 1011 aa10.81□□□□□ -0.68
USP3-208ENST00000558285 DOK7Q18PE1 504 aa10.81□□□□□ -0.68
USP3-208ENST00000558285 ATF7IPQ6VMQ6 1270 aa10.81□□□□□ -0.68
USP3-208ENST00000558285 PAXIP1Q6ZW49 1069 aaPredicted RBP10.81□□□□□ -0.68
USP3-208ENST00000558285 VPS37DQ86XT2 251 aa10.81□□□□□ -0.68
USP3-208ENST00000558285 CNOT7Q9UIV1 285 aaKnown RBP10.81□□□□□ -0.68
USP3-208ENST00000558285 NBPF7P0C2Y1 421 aaPredicted RBP10.8□□□□□ -0.68
USP3-208ENST00000558285 SCNN1DP51172 638 aa10.8□□□□□ -0.68
USP3-208ENST00000558285 RABL6Q3YEC7 729 aaPredicted RBP10.8□□□□□ -0.68
USP3-208ENST00000558285 CAVIN4Q5BKX8 364 aa10.8□□□□□ -0.68
USP3-208ENST00000558285 POTECB2RU33 542 aa10.79□□□□□ -0.68
USP3-208ENST00000558285 PSMD14O00487 310 aa10.79□□□□□ -0.68
USP3-208ENST00000558285 UBE4AQ14139 1066 aa10.79□□□□□ -0.68
USP3-208ENST00000558285 STRIP1Q5VSL9 837 aa10.79□□□□□ -0.68
USP3-208ENST00000558285 INTS3Q68E01 1043 aaKnown RBP10.79□□□□□ -0.68
USP3-208ENST00000558285 RSBN1LQ6PCB5 846 aaPredicted RBP10.79□□□□□ -0.68
USP3-208ENST00000558285 MICALL2Q8IY33 904 aa10.79□□□□□ -0.68
USP3-208ENST00000558285 CNTROBQ8N137 903 aa10.79□□□□□ -0.68
USP3-208ENST00000558285 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.79□□□□□ -0.68
USP3-208ENST00000558285 FBXW7Q969H0 707 aa10.79□□□□□ -0.68
USP3-208ENST00000558285 SUCLG2Q96I99 432 aa10.79□□□□□ -0.68
USP3-208ENST00000558285 BICC1Q9H694 974 aaKnown RBP10.79□□□□□ -0.68
USP3-208ENST00000558285 VIL1P09327 827 aaKnown RBP10.78□□□□□ -0.68
USP3-208ENST00000558285 USP17L8P0C7I0 530 aa10.78□□□□□ -0.68
USP3-208ENST00000558285 METTL24Q5JXM2 366 aa10.78□□□□□ -0.68
USP3-208ENST00000558285 C15orf52Q6ZUT6 534 aaKnown RBP10.78□□□□□ -0.68
USP3-208ENST00000558285 DCPSQ96C86 337 aaKnown RBP10.78□□□□□ -0.68
USP3-208ENST00000558285 USP44Q9H0E7 712 aa10.78□□□□□ -0.68
USP3-208ENST00000558285 CREBZFQ9NS37 354 aa10.78□□□□□ -0.68
USP3-208ENST00000558285 FRAT2O75474 233 aaPredicted RBP10.78□□□□□ -0.68
USP3-208ENST00000558285 IFIT1P09914 478 aaKnown RBP10.78□□□□□ -0.68
USP3-208ENST00000558285 EPS15P42566 896 aa10.78□□□□□ -0.68
USP3-208ENST00000558285 ERICH6BQ5W0A0 696 aa10.78□□□□□ -0.68
USP3-208ENST00000558285 CDC37L1Q7L3B6 337 aa10.78□□□□□ -0.68
USP3-208ENST00000558285 ZNF609O15014 1411 aa10.77□□□□□ -0.68
USP3-208ENST00000558285 DUOX1Q9NRD9 1551 aa10.77□□□□□ -0.69
USP3-208ENST00000558285 UTRNP46939 3433 aa10.77□□□□□ -0.69
USP3-208ENST00000558285 TMEM88BA6NKF7 163 aa10.77□□□□□ -0.69
USP3-208ENST00000558285 YDJCA8MPS7 323 aa10.77□□□□□ -0.69
USP3-208ENST00000558285 PLIN1O60240 522 aa10.77□□□□□ -0.69
USP3-208ENST00000558285 GNAI2P04899 355 aa10.77□□□□□ -0.69
USP3-208ENST00000558285 SULF1Q8IWU6 871 aa10.77□□□□□ -0.69
USP3-208ENST00000558285 GNL3LQ9NVN8 582 aaKnown RBP10.77□□□□□ -0.69
USP3-208ENST00000558285 GOLGB1Q14789 3259 aaKnown RBP10.76□□□□□ -0.69
USP3-208ENST00000558285 MYO1BO43795 1136 aa10.76□□□□□ -0.69
USP3-208ENST00000558285 SLC5A1P13866 664 aa10.76□□□□□ -0.69
USP3-208ENST00000558285 PUM3Q15397 648 aaKnown RBP10.76□□□□□ -0.69
USP3-208ENST00000558285 TTLL5Q6EMB2 1281 aa10.76□□□□□ -0.69
USP3-208ENST00000558285 CIAO1O76071 339 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 TRIM27P14373 513 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 HIBADHP31937 336 aaKnown RBP10.75□□□□□ -0.69
USP3-208ENST00000558285 FKBP1AP62942 108 aaKnown RBP10.75□□□□□ -0.69
USP3-208ENST00000558285 KIF4BQ2VIQ3 1234 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 EPHA10Q5JZY3 1008 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 DZIP1LQ8IYY4 767 aaKnown RBP10.75□□□□□ -0.69
USP3-208ENST00000558285 TBC1D22AQ8WUA7 517 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 CEP126Q9P2H0 1117 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 EYA2O00167 538 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 TAF5LO75529 589 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 PDE8BO95263 885 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 IL15P40933 162 aaPredicted RBP10.75□□□□□ -0.69
USP3-208ENST00000558285 ECE1P42892 770 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 MAP1SQ66K74 1059 aaPredicted RBP10.75□□□□□ -0.69
USP3-208ENST00000558285 KLRG1Q96E93 195 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 ZNF594Q96JF6 807 aaPredicted RBP10.75□□□□□ -0.69
USP3-208ENST00000558285 GPR101Q96P66 508 aaPredicted RBP10.75□□□□□ -0.69
USP3-208ENST00000558285 CD209Q9NNX6 404 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 ABT1Q9ULW3 272 aaKnown RBP10.75□□□□□ -0.69
USP3-208ENST00000558285 AKAP2Q9Y2D5 859 aa10.75□□□□□ -0.69
USP3-208ENST00000558285 LTBP1Q14766 1721 aa10.74□□□□□ -0.69
USP3-208ENST00000558285 COL4A5P29400 1685 aa10.74□□□□□ -0.69
USP3-208ENST00000558285 NF2P35240 595 aa10.74□□□□□ -0.69
USP3-208ENST00000558285 ZNF280AP59817 542 aaPredicted RBP10.74□□□□□ -0.69
USP3-208ENST00000558285 ITPRIPQ8IWB1 547 aa10.74□□□□□ -0.69
USP3-208ENST00000558285 ANKRD44Q8N8A2 993 aa10.74□□□□□ -0.69
USP3-208ENST00000558285 PGAP2Q9UHJ9 254 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms