RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 ATG9AQ7Z3C6 839 aa14.21□□□□□ -0.13
CCDC88C-212ENST00000556767 GPC2Q8N158 579 aa14.21□□□□□ -0.13
CCDC88C-212ENST00000556767 UTRNP46939 3433 aa14.21□□□□□ -0.14
CCDC88C-212ENST00000556767 SURF6O75683 361 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-212ENST00000556767 PUM3Q15397 648 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-212ENST00000556767 ZNF804AQ7Z570 1209 aa14.2□□□□□ -0.14
CCDC88C-212ENST00000556767 PODNQ7Z5L7 613 aa14.2□□□□□ -0.14
CCDC88C-212ENST00000556767 C16orf71Q8IYS4 520 aaPredicted RBP14.2□□□□□ -0.14
CCDC88C-212ENST00000556767 SSH3Q8TE77 659 aa14.2□□□□□ -0.14
CCDC88C-212ENST00000556767 CRBNQ96SW2 442 aa14.2□□□□□ -0.14
CCDC88C-212ENST00000556767 COA1Q9GZY4 146 aa14.2□□□□□ -0.14
CCDC88C-212ENST00000556767 KCNQ5Q9NR82 932 aa14.2□□□□□ -0.14
CCDC88C-212ENST00000556767 PSMD14O00487 310 aa14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 HMMRO75330 724 aa14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 IFIT1P09914 478 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 SLC5A1P13866 664 aa14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 VEGFAP15692 232 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 LMOD1P29536 600 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 GYG1P46976 350 aa14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 POLA2Q14181 598 aa14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 VPS37DQ86XT2 251 aa14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 RPAP2Q8IXW5 612 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 VGLL2Q8N8G2 317 aa14.19□□□□□ -0.14
CCDC88C-212ENST00000556767 IQCA1LA6NCM1 817 aa14.18□□□□□ -0.14
CCDC88C-212ENST00000556767 TFCP2Q12800 502 aa14.18□□□□□ -0.14
CCDC88C-212ENST00000556767 ATP2B3Q16720 1220 aa14.18□□□□□ -0.14
CCDC88C-212ENST00000556767 CAVIN4Q5BKX8 364 aa14.18□□□□□ -0.14
CCDC88C-212ENST00000556767 C15orf52Q6ZUT6 534 aaKnown RBP14.18□□□□□ -0.14
CCDC88C-212ENST00000556767 CD209Q9NNX6 404 aa14.18□□□□□ -0.14
CCDC88C-212ENST00000556767 USP17L3A6NCW0 530 aa14.17□□□□□ -0.14
CCDC88C-212ENST00000556767 USP17L4A6NCW7 530 aa14.17□□□□□ -0.14
CCDC88C-212ENST00000556767 HIBADHP31937 336 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-212ENST00000556767 GMPSP49915 693 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-212ENST00000556767 USP17L1Q7RTZ2 530 aa14.17□□□□□ -0.14
CCDC88C-212ENST00000556767 LPIN2Q92539 896 aa14.17□□□□□ -0.14
CCDC88C-212ENST00000556767 L3MBTL3Q96JM7 780 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-212ENST00000556767 HACL1Q9UJ83 578 aa14.17□□□□□ -0.14
CCDC88C-212ENST00000556767 ZBTB12Q9Y330 459 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-212ENST00000556767 WDR90Q96KV7 1748 aa14.17□□□□□ -0.14
CCDC88C-212ENST00000556767 POTECB2RU33 542 aa14.16□□□□□ -0.14
CCDC88C-212ENST00000556767 KIF3CO14782 793 aa14.16□□□□□ -0.14
CCDC88C-212ENST00000556767 FRAT2O75474 233 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-212ENST00000556767 GTF2IP78347 998 aa14.16□□□□□ -0.14
CCDC88C-212ENST00000556767 FAM84BQ96KN1 310 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-212ENST00000556767 NEUROD6Q96NK8 337 aa14.16□□□□□ -0.14
CCDC88C-212ENST00000556767 AKAP2Q9Y2D5 859 aa14.16□□□□□ -0.14
CCDC88C-212ENST00000556767 IRS2Q9Y4H2 1338 aa14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 SCN9AQ15858 1988 aa14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 FGFR2P21802 821 aa14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 EPHX2P34913 555 aa14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 BCAMP50895 628 aa14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 SCNN1DP51172 638 aa14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 EAPPQ56P03 285 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 TTLL5Q6EMB2 1281 aa14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 BCL11AQ9H165 835 aa14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 IQSEC3Q9UPP2 1182 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 JAG2Q9Y219 1238 aa14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 EXOC6BQ9Y2D4 811 aa14.15□□□□□ -0.14
CCDC88C-212ENST00000556767 A0A1B0GUL7 405 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 H7C1D1 291 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 APBB1O00213 710 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 SASH1O94885 1247 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 VIL1P09327 827 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 IL1R1P14778 569 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 EPS15P42566 896 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 TIMM10P62072 90 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 STRIP1Q5VSL9 837 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 RSBN1LQ6PCB5 846 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 SIRT2Q8IXJ6 389 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 MXD3Q9BW11 206 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 TAF1DQ9H5J8 278 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 GPRC5DQ9NZD1 345 aa14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 CNOT7Q9UIV1 285 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 NOP58Q9Y2X3 529 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-212ENST00000556767 SCN4AP35499 1836 aa14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 RPS12P25398 132 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 ADORA1P30542 326 aa14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 IRX6P78412 446 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 CHAF1AQ13111 956 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 HSP90AB4PQ58FF6 505 aa14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 GORABQ5T7V8 394 aa14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 FBXO33Q7Z6M2 555 aa14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 ERC1Q8IUD2 1116 aa14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 MICALL2Q8IY33 904 aa14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 TDRD7Q8NHU6 1098 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 CLEC11AQ9Y240 323 aa14.13□□□□□ -0.15
CCDC88C-212ENST00000556767 SHTN1A0MZ66 631 aa14.12□□□□□ -0.15
CCDC88C-212ENST00000556767 TOMM70O94826 608 aa14.12□□□□□ -0.15
CCDC88C-212ENST00000556767 DACT2Q5SW24 774 aa14.12□□□□□ -0.15
CCDC88C-212ENST00000556767 RBM26Q5T8P6 1007 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-212ENST00000556767 AGBL3Q8NEM8 1001 aa14.12□□□□□ -0.15
CCDC88C-212ENST00000556767 DPF2Q92785 391 aa14.12□□□□□ -0.15
CCDC88C-212ENST00000556767 XAGE2Q96GT9 111 aa14.12□□□□□ -0.15
CCDC88C-212ENST00000556767 GNL3LQ9NVN8 582 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-212ENST00000556767 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-212ENST00000556767 MYO3BQ8WXR4 1341 aa14.12□□□□□ -0.15
CCDC88C-212ENST00000556767 USP17L8P0C7I0 530 aa14.11□□□□□ -0.15
CCDC88C-212ENST00000556767 TNNI3KQ59H18 835 aa14.11□□□□□ -0.15
CCDC88C-212ENST00000556767 PNMA8AQ86V59 439 aaPredicted RBP14.11□□□□□ -0.15
CCDC88C-212ENST00000556767 EXOC6Q8TAG9 804 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms