RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 TMX4Q9H1E5 349 aaPredicted RBP12.15□□□□□ -0.46
SRP54-210ENST00000556380 VPS33BQ9H267 617 aa12.15□□□□□ -0.46
SRP54-210ENST00000556380 BICC1Q9H694 974 aaKnown RBP12.15□□□□□ -0.46
SRP54-210ENST00000556380 POLLQ9UGP5 575 aa12.15□□□□□ -0.46
SRP54-210ENST00000556380 RCAN3Q9UKA8 241 aa12.15□□□□□ -0.46
SRP54-210ENST00000556380 MINPP1Q9UNW1 487 aa12.15□□□□□ -0.46
SRP54-210ENST00000556380 ANKRD18BA2A2Z9 1011 aa12.14□□□□□ -0.47
SRP54-210ENST00000556380 TMEM57Q8N5G2 664 aa12.14□□□□□ -0.47
SRP54-210ENST00000556380 CLUAP1Q96AJ1 413 aa12.14□□□□□ -0.47
SRP54-210ENST00000556380 MEIS3Q99687 375 aa12.14□□□□□ -0.47
SRP54-210ENST00000556380 NSFL1CQ9UNZ2 370 aaKnown RBP12.14□□□□□ -0.47
SRP54-210ENST00000556380 LRRC37AA6NMS7 1700 aa12.14□□□□□ -0.47
SRP54-210ENST00000556380 COL4A5P29400 1685 aa12.13□□□□□ -0.47
SRP54-210ENST00000556380 GLTPD2A6NH11 291 aa12.13□□□□□ -0.47
SRP54-210ENST00000556380 WTIPA6NIX2 430 aaPredicted RBP12.13□□□□□ -0.47
SRP54-210ENST00000556380 FZD9O00144 591 aa12.13□□□□□ -0.47
SRP54-210ENST00000556380 IGHMBP2P38935 993 aaKnown RBP12.13□□□□□ -0.47
SRP54-210ENST00000556380 KIAA2012Q0VF49 1180 aa12.13□□□□□ -0.47
SRP54-210ENST00000556380 IFIT5Q13325 482 aaKnown RBP12.13□□□□□ -0.47
SRP54-210ENST00000556380 DZIP1LQ8IYY4 767 aaKnown RBP12.13□□□□□ -0.47
SRP54-210ENST00000556380 SUPT20HQ8NEM7 779 aa12.13□□□□□ -0.47
SRP54-210ENST00000556380 FBXO22Q8NEZ5 403 aa12.13□□□□□ -0.47
SRP54-210ENST00000556380 TBC1D16Q8TBP0 767 aa12.13□□□□□ -0.47
SRP54-210ENST00000556380 YTHDC1Q96MU7 727 aaKnown RBP12.13□□□□□ -0.47
SRP54-210ENST00000556380 DUOX1Q9NRD9 1551 aa12.13□□□□□ -0.47
SRP54-210ENST00000556380 MYH3P11055 1940 aa12.12□□□□□ -0.47
SRP54-210ENST00000556380 UBTFL1P0CB47 393 aaPredicted RBP12.12□□□□□ -0.47
SRP54-210ENST00000556380 HOXB3P14651 431 aaPredicted RBP12.12□□□□□ -0.47
SRP54-210ENST00000556380 RFX5P48382 616 aaPredicted RBP12.12□□□□□ -0.47
SRP54-210ENST00000556380 TMEM92Q6UXU6 159 aa12.12□□□□□ -0.47
SRP54-210ENST00000556380 ZNF594Q96JF6 807 aaPredicted RBP12.12□□□□□ -0.47
SRP54-210ENST00000556380 XDHP47989 1333 aa12.11□□□□□ -0.47
SRP54-210ENST00000556380 LTBP1Q14766 1721 aa12.11□□□□□ -0.47
SRP54-210ENST00000556380 ZBTB7BO15156 539 aaPredicted RBP12.11□□□□□ -0.47
SRP54-210ENST00000556380 PPIP5K2O43314 1243 aa12.11□□□□□ -0.47
SRP54-210ENST00000556380 GNAI3P08754 354 aa12.11□□□□□ -0.47
SRP54-210ENST00000556380 AOC3Q16853 763 aa12.11□□□□□ -0.47
SRP54-210ENST00000556380 CCDC57Q2TAC2 916 aa12.11□□□□□ -0.47
SRP54-210ENST00000556380 LARGE2Q8N3Y3 721 aa12.11□□□□□ -0.47
SRP54-210ENST00000556380 MPHOSPH8Q99549 860 aa12.11□□□□□ -0.47
SRP54-210ENST00000556380 MFRPQ9BY79 579 aa12.11□□□□□ -0.47
SRP54-210ENST00000556380 CHMP3Q9Y3E7 222 aa12.11□□□□□ -0.47
SRP54-210ENST00000556380 LRRFIP2Q9Y608 721 aaKnown RBP12.11□□□□□ -0.47
SRP54-210ENST00000556380 CCDC88AQ3V6T2 1871 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 DICER1Q9UPY3 1922 aaKnown RBP12.1□□□□□ -0.47
SRP54-210ENST00000556380 POTECB2RU33 542 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 C6orf229H3BNL8 230 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 PLIN1O60240 522 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 ATP2B4P23634 1241 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 EMP3P54852 163 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 CHRNDQ07001 517 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 PANK1Q8TE04 598 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 ZNF526Q8TF50 670 aaPredicted RBP12.1□□□□□ -0.47
SRP54-210ENST00000556380 JDP2Q8WYK2 163 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 GPR101Q96P66 508 aaPredicted RBP12.1□□□□□ -0.47
SRP54-210ENST00000556380 PUS3Q9BZE2 481 aaKnown RBP12.1□□□□□ -0.47
SRP54-210ENST00000556380 ANKIB1Q9P2G1 1089 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 GGA1Q9UJY5 639 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 RIPOR2Q9Y4F9 1068 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 ZNF541Q9H0D2 1346 aa12.1□□□□□ -0.47
SRP54-210ENST00000556380 KIF3CO14782 793 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 DDNO94850 711 aaPredicted RBP12.09□□□□□ -0.47
SRP54-210ENST00000556380 UFL1O94874 794 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 MTX1Q13505 466 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 WASHC4Q2M389 1173 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 LDHAL6AQ6ZMR3 332 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 ANKRD2Q9GZV1 360 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 GPBP1L1Q9HC44 474 aaPredicted RBP12.09□□□□□ -0.47
SRP54-210ENST00000556380 NMRK2Q9NPI5 230 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 ZNRF3Q9ULT6 936 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 HDAC5Q9UQL6 1122 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 LEMD3Q9Y2U8 911 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 KDM2BQ8NHM5 1336 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 IRS2Q9Y4H2 1338 aa12.09□□□□□ -0.47
SRP54-210ENST00000556380 YDJCA8MPS7 323 aa12.08□□□□□ -0.48
SRP54-210ENST00000556380 GNAI2P04899 355 aa12.08□□□□□ -0.48
SRP54-210ENST00000556380 PTPN12Q05209 780 aaKnown RBP12.08□□□□□ -0.48
SRP54-210ENST00000556380 CXCL9Q07325 125 aa12.08□□□□□ -0.48
SRP54-210ENST00000556380 FTSJ3Q8IY81 847 aaKnown RBP12.08□□□□□ -0.48
SRP54-210ENST00000556380 NIM1KQ8IY84 436 aa12.08□□□□□ -0.48
SRP54-210ENST00000556380 KLHDC4Q8TBB5 520 aa12.08□□□□□ -0.48
SRP54-210ENST00000556380 EYA3Q99504 573 aa12.08□□□□□ -0.48
SRP54-210ENST00000556380 ZC3H12CQ9C0D7 883 aaKnown RBP12.08□□□□□ -0.48
SRP54-210ENST00000556380 SNAP23O00161 211 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 RIMBP2O15034 1052 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 TAF5LO75529 589 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 MS4A1P11836 297 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 PDE3AQ14432 1141 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 LRRC24Q50LG9 513 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 TAF7LQ5H9L4 462 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 C15orf52Q6ZUT6 534 aaKnown RBP12.07□□□□□ -0.48
SRP54-210ENST00000556380 TXNRD3Q86VQ6 643 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 HELBQ8NG08 1087 aaPredicted RBP12.07□□□□□ -0.48
SRP54-210ENST00000556380 RRAGCQ9HB90 399 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 CNNM1Q9NRU3 951 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 ZNF804BA4D1E1 1349 aa12.07□□□□□ -0.48
SRP54-210ENST00000556380 KLRK1P26718 216 aa12.06□□□□□ -0.48
SRP54-210ENST00000556380 EIF6P56537 245 aaKnown RBP12.06□□□□□ -0.48
SRP54-210ENST00000556380 DOK7Q18PE1 504 aa12.06□□□□□ -0.48
SRP54-210ENST00000556380 C20orf194Q5TEA3 1177 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms