RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 TAF1P21675 1872 aa12.54□□□□□ -0.4
SYNE2-215ENST00000554997 LTBP3Q9NS15 1303 aa12.54□□□□□ -0.4
SYNE2-215ENST00000554997 IFIT2P09913 472 aaKnown RBP12.53□□□□□ -0.4
SYNE2-215ENST00000554997 CAVIN4Q5BKX8 364 aa12.53□□□□□ -0.4
SYNE2-215ENST00000554997 FBXO33Q7Z6M2 555 aa12.53□□□□□ -0.4
SYNE2-215ENST00000554997 AACSQ86V21 672 aa12.53□□□□□ -0.4
SYNE2-215ENST00000554997 C16orf71Q8IYS4 520 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-215ENST00000554997 CNKSR2Q8WXI2 1034 aa12.53□□□□□ -0.4
SYNE2-215ENST00000554997 XAGE2Q96GT9 111 aa12.53□□□□□ -0.4
SYNE2-215ENST00000554997 FAM84BQ96KN1 310 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-215ENST00000554997 CCDC8Q9H0W5 538 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-215ENST00000554997 TAOK3Q9H2K8 898 aa12.53□□□□□ -0.4
SYNE2-215ENST00000554997 IRS2Q9Y4H2 1338 aa12.53□□□□□ -0.4
SYNE2-215ENST00000554997 NFKBIEO00221 500 aa12.52□□□□□ -0.41
SYNE2-215ENST00000554997 HIBADHP31937 336 aaKnown RBP12.52□□□□□ -0.41
SYNE2-215ENST00000554997 KIAA2012Q0VF49 1180 aa12.52□□□□□ -0.41
SYNE2-215ENST00000554997 TXNRD3Q86VQ6 643 aa12.52□□□□□ -0.41
SYNE2-215ENST00000554997 GOLGB1Q14789 3259 aaKnown RBP12.51□□□□□ -0.41
SYNE2-215ENST00000554997 DCAF8L1A6NGE4 600 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 RIMBP2O15034 1052 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 ZBTB22O15209 634 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 KLRK1P26718 216 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 GYG1P46976 350 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 BCAMP50895 628 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 CCDC158Q5M9N0 1113 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 GORABQ5T7V8 394 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 DBNDD2Q9BQY9 259 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 LNPKQ9C0E8 428 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 COA1Q9GZY4 146 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 ZNF277Q9NRM2 450 aaPredicted RBP12.51□□□□□ -0.41
SYNE2-215ENST00000554997 DBNLQ9UJU6 430 aaKnown RBP12.51□□□□□ -0.41
SYNE2-215ENST00000554997 MED23Q9ULK4 1368 aa12.51□□□□□ -0.41
SYNE2-215ENST00000554997 CHD4Q14839 1912 aa12.5□□□□□ -0.41
SYNE2-215ENST00000554997 G3V3G9 751 aa12.5□□□□□ -0.41
SYNE2-215ENST00000554997 ADORA1P30542 326 aa12.5□□□□□ -0.41
SYNE2-215ENST00000554997 IARSP41252 1262 aaKnown RBP12.5□□□□□ -0.41
SYNE2-215ENST00000554997 DCAF8Q5TAQ9 597 aa12.5□□□□□ -0.41
SYNE2-215ENST00000554997 CCDC102BQ68D86 513 aa12.5□□□□□ -0.41
SYNE2-215ENST00000554997 ZNF804AQ7Z570 1209 aa12.5□□□□□ -0.41
SYNE2-215ENST00000554997 PODNQ7Z5L7 613 aa12.5□□□□□ -0.41
SYNE2-215ENST00000554997 VPS37DQ86XT2 251 aa12.5□□□□□ -0.41
SYNE2-215ENST00000554997 ZNF512BQ96KM6 892 aaPredicted RBP12.5□□□□□ -0.41
SYNE2-215ENST00000554997 GPR101Q96P66 508 aaPredicted RBP12.5□□□□□ -0.41
SYNE2-215ENST00000554997 BCL11AQ9H165 835 aa12.5□□□□□ -0.41
SYNE2-215ENST00000554997 GNL3LQ9NVN8 582 aaKnown RBP12.5□□□□□ -0.41
SYNE2-215ENST00000554997 BRCA1P38398 1863 aaKnown RBP12.49□□□□□ -0.41
SYNE2-215ENST00000554997 LRRC37AA6NMS7 1700 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 PPIP5K2O43314 1243 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 UQCRFS1P1P0C7P4 283 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 IL1R1P14778 569 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 LMNB1P20700 586 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 PRELPP51888 382 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 AOC3Q16853 763 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 LARGE2Q8N3Y3 721 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 TDRD7Q8NHU6 1098 aaKnown RBP12.49□□□□□ -0.41
SYNE2-215ENST00000554997 CD209Q9NNX6 404 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 ECHDC1Q9NTX5 307 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 TLR7Q9NYK1 1049 aaKnown RBP12.49□□□□□ -0.41
SYNE2-215ENST00000554997 STAP2Q9UGK3 403 aa12.49□□□□□ -0.41
SYNE2-215ENST00000554997 ZNF609O15014 1411 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 TTC41PQ6P2S7 1318 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 SALL3Q9BXA9 1300 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 SEMA3EO15041 775 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 ATP5JP18859 108 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 PHKA1P46020 1223 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 DOK7Q18PE1 504 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 PLEKHM2Q8IWE5 1019 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 OTUD7AQ8TE49 926 aaPredicted RBP12.48□□□□□ -0.41
SYNE2-215ENST00000554997 JDP2Q8WYK2 163 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 OSBPL3Q9H4L5 887 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 ZNRF3Q9ULT6 936 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 UTRNP46939 3433 aa12.48□□□□□ -0.41
SYNE2-215ENST00000554997 MX1P20591 662 aa12.47□□□□□ -0.41
SYNE2-215ENST00000554997 PDE4AP27815 886 aa12.47□□□□□ -0.41
SYNE2-215ENST00000554997 ARID4AP29374 1257 aaPredicted RBP12.47□□□□□ -0.41
SYNE2-215ENST00000554997 PDE1AP54750 535 aa12.47□□□□□ -0.41
SYNE2-215ENST00000554997 RASSF7Q02833 373 aa12.47□□□□□ -0.41
SYNE2-215ENST00000554997 TTC39AQ5SRH9 613 aa12.47□□□□□ -0.41
SYNE2-215ENST00000554997 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.47□□□□□ -0.41
SYNE2-215ENST00000554997 GPATCH3Q96I76 525 aa12.47□□□□□ -0.41
SYNE2-215ENST00000554997 DUOX1Q9NRD9 1551 aa12.47□□□□□ -0.41
SYNE2-215ENST00000554997 LTBP1Q14766 1721 aa12.46□□□□□ -0.41
SYNE2-215ENST00000554997 ERC2O15083 957 aa12.46□□□□□ -0.41
SYNE2-215ENST00000554997 FRAT2O75474 233 aaPredicted RBP12.46□□□□□ -0.41
SYNE2-215ENST00000554997 NIM1KQ8IY84 436 aa12.46□□□□□ -0.41
SYNE2-215ENST00000554997 DBNDD1Q9H9R9 158 aa12.46□□□□□ -0.41
SYNE2-215ENST00000554997 DENND2AQ9ULE3 1009 aa12.46□□□□□ -0.41
SYNE2-215ENST00000554997 FZD9O00144 591 aa12.45□□□□□ -0.42
SYNE2-215ENST00000554997 ECE2O60344 883 aa12.45□□□□□ -0.42
SYNE2-215ENST00000554997 SPATA5Q8NB90 893 aa12.45□□□□□ -0.42
SYNE2-215ENST00000554997 KCNQ5Q9NR82 932 aa12.45□□□□□ -0.42
SYNE2-215ENST00000554997 HMG20BQ9P0W2 317 aa12.45□□□□□ -0.42
SYNE2-215ENST00000554997 SPEF2Q9C093 1822 aa12.45□□□□□ -0.42
SYNE2-215ENST00000554997 ARFGEF1Q9Y6D6 1849 aa12.45□□□□□ -0.42
SYNE2-215ENST00000554997 AOX1Q06278 1338 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 PDS5AQ29RF7 1337 aaKnown RBP12.44□□□□□ -0.42
SYNE2-215ENST00000554997 FAM205AQ6ZU69 1335 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 YDJCA8MPS7 323 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 GLRX3O76003 335 aaKnown RBP12.44□□□□□ -0.42
SYNE2-215ENST00000554997 MCAMP43121 646 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms