RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 USP17L3A6NCW0 530 aa14.59□□□□□ -0.07
VPS33B-204ENST00000554660 USP17L4A6NCW7 530 aa14.59□□□□□ -0.07
VPS33B-204ENST00000554660 ELL2O00472 640 aaPredicted RBP14.59□□□□□ -0.07
VPS33B-204ENST00000554660 PDE8AO60658 829 aa14.59□□□□□ -0.07
VPS33B-204ENST00000554660 PCCAP05165 728 aaPredicted RBP14.59□□□□□ -0.07
VPS33B-204ENST00000554660 MKRN3Q13064 507 aaKnown RBP14.59□□□□□ -0.07
VPS33B-204ENST00000554660 NBPF9Q3BBW0 867 aa14.59□□□□□ -0.07
VPS33B-204ENST00000554660 PRPF38BQ5VTL8 546 aaKnown RBP14.59□□□□□ -0.07
VPS33B-204ENST00000554660 USP17L1Q7RTZ2 530 aa14.59□□□□□ -0.07
VPS33B-204ENST00000554660 ANKRD18AQ8IVF6 992 aa14.59□□□□□ -0.07
VPS33B-204ENST00000554660 REM2Q8IYK8 340 aaPredicted RBP14.59□□□□□ -0.07
VPS33B-204ENST00000554660 CWC25Q9NXE8 425 aaPredicted RBP14.59□□□□□ -0.07
VPS33B-204ENST00000554660 HDAC9Q9UKV0 1011 aa14.59□□□□□ -0.07
VPS33B-204ENST00000554660 HSP90B1P14625 803 aaKnown RBP14.58□□□□□ -0.08
VPS33B-204ENST00000554660 TTLL12Q14166 644 aaPredicted RBP14.58□□□□□ -0.08
VPS33B-204ENST00000554660 CCDC191Q8NCU4 936 aa14.58□□□□□ -0.08
VPS33B-204ENST00000554660 FBXW7Q969H0 707 aa14.58□□□□□ -0.08
VPS33B-204ENST00000554660 MED23Q9ULK4 1368 aa14.58□□□□□ -0.08
VPS33B-204ENST00000554660 SASH1O94885 1247 aa14.57□□□□□ -0.08
VPS33B-204ENST00000554660 ATP2B4P23634 1241 aa14.57□□□□□ -0.08
VPS33B-204ENST00000554660 CTSWP56202 376 aa14.57□□□□□ -0.08
VPS33B-204ENST00000554660 PODNQ7Z5L7 613 aa14.57□□□□□ -0.08
VPS33B-204ENST00000554660 ADAMTS8Q9UP79 889 aa14.57□□□□□ -0.08
VPS33B-204ENST00000554660 ZNF853P0CG23 659 aa14.56□□□□□ -0.08
VPS33B-204ENST00000554660 DACT2Q5SW24 774 aa14.56□□□□□ -0.08
VPS33B-204ENST00000554660 METTL22Q9BUU2 404 aaPredicted RBP14.56□□□□□ -0.08
VPS33B-204ENST00000554660 WNT10BO00744 389 aa14.55□□□□□ -0.08
VPS33B-204ENST00000554660 IRX6P78412 446 aaPredicted RBP14.55□□□□□ -0.08
VPS33B-204ENST00000554660 PRKG1Q13976 671 aa14.55□□□□□ -0.08
VPS33B-204ENST00000554660 PKN2Q16513 984 aaKnown RBP14.55□□□□□ -0.08
VPS33B-204ENST00000554660 CDC5LQ99459 802 aaKnown RBP14.55□□□□□ -0.08
VPS33B-204ENST00000554660 GREM2Q9H772 168 aa14.55□□□□□ -0.08
VPS33B-204ENST00000554660 HTTP42858 3142 aa14.55□□□□□ -0.08
VPS33B-204ENST00000554660 GPR25O00155 361 aa14.54□□□□□ -0.08
VPS33B-204ENST00000554660 C8orf58Q8NAV2 365 aa14.54□□□□□ -0.08
VPS33B-204ENST00000554660 IFT57Q9NWB7 429 aa14.54□□□□□ -0.08
VPS33B-204ENST00000554660 MINPP1Q9UNW1 487 aa14.54□□□□□ -0.08
VPS33B-204ENST00000554660 MAP3K2Q9Y2U5 619 aa14.54□□□□□ -0.08
VPS33B-204ENST00000554660 MYH3P11055 1940 aa14.54□□□□□ -0.08
VPS33B-204ENST00000554660 MYO3BQ8WXR4 1341 aa14.53□□□□□ -0.08
VPS33B-204ENST00000554660 DDX58O95786 925 aaKnown RBP14.53□□□□□ -0.08
VPS33B-204ENST00000554660 IGKV5-2P06315 115 aa14.53□□□□□ -0.08
VPS33B-204ENST00000554660 KLRK1P26718 216 aa14.53□□□□□ -0.08
VPS33B-204ENST00000554660 NF2P35240 595 aa14.53□□□□□ -0.08
VPS33B-204ENST00000554660 TM4SF4P48230 202 aa14.53□□□□□ -0.08
VPS33B-204ENST00000554660 CCT4P50991 539 aaKnown RBP14.53□□□□□ -0.08
VPS33B-204ENST00000554660 TXNRD3Q86VQ6 643 aa14.53□□□□□ -0.08
VPS33B-204ENST00000554660 OGFOD1Q8N543 542 aa14.53□□□□□ -0.08
VPS33B-204ENST00000554660 R3HDMLQ9H3Y0 253 aa14.53□□□□□ -0.08
VPS33B-204ENST00000554660 FZD1Q9UP38 647 aa14.53□□□□□ -0.08
VPS33B-204ENST00000554660 GNAI1P63096 354 aa14.52□□□□□ -0.09
VPS33B-204ENST00000554660 PTPN12Q05209 780 aaKnown RBP14.52□□□□□ -0.09
VPS33B-204ENST00000554660 SREBF2Q12772 1141 aa14.52□□□□□ -0.09
VPS33B-204ENST00000554660 STRIP1Q5VSL9 837 aa14.52□□□□□ -0.09
VPS33B-204ENST00000554660 FBXO46Q6PJ61 603 aaPredicted RBP14.52□□□□□ -0.09
VPS33B-204ENST00000554660 KIAA0825Q8IV33 1275 aa14.52□□□□□ -0.09
VPS33B-204ENST00000554660 TTLL11Q8NHH1 800 aa14.52□□□□□ -0.09
VPS33B-204ENST00000554660 BSDC1Q9NW68 430 aaPredicted RBP14.52□□□□□ -0.09
VPS33B-204ENST00000554660 APAF1O14727 1248 aa14.51□□□□□ -0.09
VPS33B-204ENST00000554660 CWF19L2Q2TBE0 894 aaKnown RBP14.51□□□□□ -0.09
VPS33B-204ENST00000554660 B4GALNT3Q6L9W6 998 aa14.51□□□□□ -0.09
VPS33B-204ENST00000554660 TSPYL6Q8N831 410 aa14.51□□□□□ -0.09
VPS33B-204ENST00000554660 COA1Q9GZY4 146 aa14.51□□□□□ -0.09
VPS33B-204ENST00000554660 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.51□□□□□ -0.09
VPS33B-204ENST00000554660 SSC5DA1L4H1 1573 aa14.51□□□□□ -0.09
VPS33B-204ENST00000554660 PI4KAP2A4QPH2 592 aa14.5□□□□□ -0.09
VPS33B-204ENST00000554660 FKTNO75072 461 aa14.5□□□□□ -0.09
VPS33B-204ENST00000554660 RRP1P56182 461 aaKnown RBP14.5□□□□□ -0.09
VPS33B-204ENST00000554660 NOM1Q5C9Z4 860 aaKnown RBP14.5□□□□□ -0.09
VPS33B-204ENST00000554660 CCDC30Q5VVM6 783 aa14.5□□□□□ -0.09
VPS33B-204ENST00000554660 ARMC9Q7Z3E5 817 aa14.5□□□□□ -0.09
VPS33B-204ENST00000554660 APOBEC3FQ8IUX4 373 aaKnown RBP14.5□□□□□ -0.09
VPS33B-204ENST00000554660 PI4KAP1Q8N8J0 262 aa14.5□□□□□ -0.09
VPS33B-204ENST00000554660 CCDC136Q96JN2 1154 aa14.5□□□□□ -0.09
VPS33B-204ENST00000554660 ANGEL1Q9UNK9 670 aaKnown RBP14.5□□□□□ -0.09
VPS33B-204ENST00000554660 MKI67P46013 3256 aaKnown RBP14.5□□□□□ -0.09
VPS33B-204ENST00000554660 CALD1Q05682 793 aaKnown RBP14.49□□□□□ -0.09
VPS33B-204ENST00000554660 SPRYD7Q5W111 196 aa14.49□□□□□ -0.09
VPS33B-204ENST00000554660 KSR2Q6VAB6 950 aa14.49□□□□□ -0.09
VPS33B-204ENST00000554660 UBE3BQ7Z3V4 1068 aa14.49□□□□□ -0.09
VPS33B-204ENST00000554660 COL1A1P02452 1464 aaPredicted RBP14.49□□□□□ -0.09
VPS33B-204ENST00000554660 ZNF804BA4D1E1 1349 aa14.48□□□□□ -0.09
VPS33B-204ENST00000554660 CENPFP49454 3210 aa14.48□□□□□ -0.09
VPS33B-204ENST00000554660 NEURL1BA8MQ27 555 aa14.48□□□□□ -0.09
VPS33B-204ENST00000554660 IGHMBP2P38935 993 aaKnown RBP14.48□□□□□ -0.09
VPS33B-204ENST00000554660 GTF2IP78347 998 aa14.48□□□□□ -0.09
VPS33B-204ENST00000554660 NEXNQ0ZGT2 675 aa14.48□□□□□ -0.09
VPS33B-204ENST00000554660 LDLRAD1Q5T700 205 aa14.48□□□□□ -0.09
VPS33B-204ENST00000554660 TTLL5Q6EMB2 1281 aa14.48□□□□□ -0.09
VPS33B-204ENST00000554660 CFHR5Q9BXR6 569 aa14.48□□□□□ -0.09
VPS33B-204ENST00000554660 RCAN3Q9UKA8 241 aa14.48□□□□□ -0.09
VPS33B-204ENST00000554660 ITGA6P23229 1130 aa14.47□□□□□ -0.09
VPS33B-204ENST00000554660 TSR2Q969E8 191 aaKnown RBP14.47□□□□□ -0.09
VPS33B-204ENST00000554660 ZBED3Q96IU2 234 aaPredicted RBP14.47□□□□□ -0.09
VPS33B-204ENST00000554660 CLMNQ96JQ2 1002 aa14.47□□□□□ -0.09
VPS33B-204ENST00000554660 LEMD3Q9Y2U8 911 aa14.47□□□□□ -0.09
VPS33B-204ENST00000554660 PCDHAC2Q9Y5I4 1007 aa14.47□□□□□ -0.09
VPS33B-204ENST00000554660 BRCA2P51587 3418 aa14.47□□□□□ -0.09
VPS33B-204ENST00000554660 A0A1B0GUL6 1792 aa14.47□□□□□ -0.09
VPS33B-204ENST00000554660 G2E3Q7L622 706 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms