RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 DDX19BQ9UMR2 479 aa28.4■■■□□ 2.14
TDP1-206ENST00000553569 IRS2Q9Y4H2 1338 aa28.4■■■□□ 2.14
TDP1-206ENST00000553569 SCNN1DP51172 638 aa28.39■■■□□ 2.14
TDP1-206ENST00000553569 UBE4AQ14139 1066 aa28.39■■■□□ 2.14
TDP1-206ENST00000553569 PDE3AQ14432 1141 aa28.39■■■□□ 2.14
TDP1-206ENST00000553569 ATG9AQ7Z3C6 839 aa28.39■■■□□ 2.14
TDP1-206ENST00000553569 VGLL2Q8N8G2 317 aa28.39■■■□□ 2.14
TDP1-206ENST00000553569 COPRSQ9NQ92 184 aa28.39■■■□□ 2.14
TDP1-206ENST00000553569 CIAO1O76071 339 aa28.38■■■□□ 2.13
TDP1-206ENST00000553569 PODNQ7Z5L7 613 aa28.38■■■□□ 2.13
TDP1-206ENST00000553569 FBXW7Q969H0 707 aa28.38■■■□□ 2.13
TDP1-206ENST00000553569 TAF1DQ9H5J8 278 aaPredicted RBP28.38■■■□□ 2.13
TDP1-206ENST00000553569 ZBTB12Q9Y330 459 aaPredicted RBP28.38■■■□□ 2.13
TDP1-206ENST00000553569 TOMM70O94826 608 aa28.37■■■□□ 2.13
TDP1-206ENST00000553569 PDE8BO95263 885 aa28.37■■■□□ 2.13
TDP1-206ENST00000553569 EPHX2P34913 555 aa28.37■■■□□ 2.13
TDP1-206ENST00000553569 RRP1P56182 461 aaKnown RBP28.37■■■□□ 2.13
TDP1-206ENST00000553569 C15orf52Q6ZUT6 534 aaKnown RBP28.37■■■□□ 2.13
TDP1-206ENST00000553569 FBXO3Q9UK99 471 aa28.37■■■□□ 2.13
TDP1-206ENST00000553569 ZNF804AQ7Z570 1209 aa28.36■■■□□ 2.13
TDP1-206ENST00000553569 IL15P40933 162 aaPredicted RBP28.35■■■□□ 2.13
TDP1-206ENST00000553569 EPS15P42566 896 aa28.35■■■□□ 2.13
TDP1-206ENST00000553569 C1QTNF8P60827 252 aa28.35■■■□□ 2.13
TDP1-206ENST00000553569 EAPPQ56P03 285 aaPredicted RBP28.35■■■□□ 2.13
TDP1-206ENST00000553569 GPRC5DQ9NZD1 345 aa28.35■■■□□ 2.13
TDP1-206ENST00000553569 ZNF646O15015 1829 aaPredicted RBP28.34■■■□□ 2.13
TDP1-206ENST00000553569 USP17L3A6NCW0 530 aa28.34■■■□□ 2.13
TDP1-206ENST00000553569 USP17L4A6NCW7 530 aa28.34■■■□□ 2.13
TDP1-206ENST00000553569 ATP8B2P98198 1209 aa28.34■■■□□ 2.13
TDP1-206ENST00000553569 PUM3Q15397 648 aaKnown RBP28.34■■■□□ 2.13
TDP1-206ENST00000553569 USP17L1Q7RTZ2 530 aa28.34■■■□□ 2.13
TDP1-206ENST00000553569 CD209Q9NNX6 404 aa28.34■■■□□ 2.13
TDP1-206ENST00000553569 CEP126Q9P2H0 1117 aa28.34■■■□□ 2.13
TDP1-206ENST00000553569 POTEIP0CG38 1075 aa28.33■■■□□ 2.13
TDP1-206ENST00000553569 POTEJP0CG39 1038 aa28.33■■■□□ 2.13
TDP1-206ENST00000553569 GYG1P46976 350 aa28.33■■■□□ 2.13
TDP1-206ENST00000553569 RBM46Q8TBY0 533 aaKnown RBP28.33■■■□□ 2.13
TDP1-206ENST00000553569 VIL1P09327 827 aaKnown RBP28.32■■■□□ 2.12
TDP1-206ENST00000553569 POLA2Q14181 598 aa28.32■■■□□ 2.12
TDP1-206ENST00000553569 CEP85Q6P2H3 762 aa28.32■■■□□ 2.12
TDP1-206ENST00000553569 SHTN1A0MZ66 631 aa28.31■■■□□ 2.12
TDP1-206ENST00000553569 RSBN1LQ6PCB5 846 aaPredicted RBP28.31■■■□□ 2.12
TDP1-206ENST00000553569 SSH3Q8TE77 659 aa28.31■■■□□ 2.12
TDP1-206ENST00000553569 CHMP4BQ9H444 224 aaKnown RBP28.31■■■□□ 2.12
TDP1-206ENST00000553569 ZBTB40Q9NUA8 1239 aa28.31■■■□□ 2.12
TDP1-206ENST00000553569 IFIT1P09914 478 aaKnown RBP28.3■■■□□ 2.12
TDP1-206ENST00000553569 SLC5A1P13866 664 aa28.3■■■□□ 2.12
TDP1-206ENST00000553569 FGFR2P21802 821 aa28.3■■■□□ 2.12
TDP1-206ENST00000553569 RPS12P25398 132 aaKnown RBP28.3■■■□□ 2.12
TDP1-206ENST00000553569 MICALL2Q8IY33 904 aa28.3■■■□□ 2.12
TDP1-206ENST00000553569 CNOT7Q9UIV1 285 aaKnown RBP28.3■■■□□ 2.12
TDP1-206ENST00000553569 HIBADHP31937 336 aaKnown RBP28.29■■■□□ 2.12
TDP1-206ENST00000553569 GTF2IP78347 998 aa28.29■■■□□ 2.12
TDP1-206ENST00000553569 ATP2B3Q16720 1220 aa28.29■■■□□ 2.12
TDP1-206ENST00000553569 VPS37DQ86XT2 251 aa28.29■■■□□ 2.12
TDP1-206ENST00000553569 SMC1BQ8NDV3 1235 aa28.29■■■□□ 2.12
TDP1-206ENST00000553569 FAM84BQ96KN1 310 aaPredicted RBP28.29■■■□□ 2.12
TDP1-206ENST00000553569 MXD3Q9BW11 206 aa28.29■■■□□ 2.12
TDP1-206ENST00000553569 IL1R1P14778 569 aa28.28■■■□□ 2.12
TDP1-206ENST00000553569 G3BP1Q13283 466 aaKnown RBP eCLIP28.28■■■□□ 2.12
TDP1-206ENST00000553569 DACT2Q5SW24 774 aa28.28■■■□□ 2.12
TDP1-206ENST00000553569 STRIP1Q5VSL9 837 aa28.28■■■□□ 2.12
TDP1-206ENST00000553569 TTLL5Q6EMB2 1281 aa28.28■■■□□ 2.12
TDP1-206ENST00000553569 PNMA8AQ86V59 439 aaPredicted RBP28.28■■■□□ 2.12
TDP1-206ENST00000553569 LPIN2Q92539 896 aa28.28■■■□□ 2.12
TDP1-206ENST00000553569 DPF2Q92785 391 aa28.28■■■□□ 2.12
TDP1-206ENST00000553569 ADARB2Q9NS39 739 aaKnown RBP28.28■■■□□ 2.12
TDP1-206ENST00000553569 CLEC11AQ9Y240 323 aa28.28■■■□□ 2.12
TDP1-206ENST00000553569 ADAMTSL1Q8N6G6 1762 aa28.28■■■□□ 2.12
TDP1-206ENST00000553569 H7C1D1 291 aa28.27■■■□□ 2.12
TDP1-206ENST00000553569 TFCP2Q12800 502 aa28.27■■■□□ 2.12
TDP1-206ENST00000553569 OS9Q13438 667 aaPredicted RBP28.27■■■□□ 2.12
TDP1-206ENST00000553569 CAVIN4Q5BKX8 364 aa28.27■■■□□ 2.12
TDP1-206ENST00000553569 LDHDQ86WU2 507 aa28.27■■■□□ 2.12
TDP1-206ENST00000553569 JAG2Q9Y219 1238 aa28.27■■■□□ 2.12
TDP1-206ENST00000553569 ZNF609O15014 1411 aa28.26■■■□□ 2.12
TDP1-206ENST00000553569 AGBL3Q8NEM8 1001 aa28.26■■■□□ 2.11
TDP1-206ENST00000553569 ARAP2Q8WZ64 1704 aa28.26■■■□□ 2.11
TDP1-206ENST00000553569 SURF6O75683 361 aaKnown RBP28.25■■■□□ 2.11
TDP1-206ENST00000553569 BCAMP50895 628 aa28.25■■■□□ 2.11
TDP1-206ENST00000553569 USP50Q70EL3 339 aaPredicted RBP28.25■■■□□ 2.11
TDP1-206ENST00000553569 FBXO33Q7Z6M2 555 aa28.25■■■□□ 2.11
TDP1-206ENST00000553569 IQSEC3Q9UPP2 1182 aaPredicted RBP28.25■■■□□ 2.11
TDP1-206ENST00000553569 FSTL1Q12841 308 aa28.24■■■□□ 2.11
TDP1-206ENST00000553569 CHADLQ6NUI6 762 aa28.24■■■□□ 2.11
TDP1-206ENST00000553569 TDRD7Q8NHU6 1098 aaKnown RBP28.24■■■□□ 2.11
TDP1-206ENST00000553569 TRPM4Q8TD43 1214 aa28.24■■■□□ 2.11
TDP1-206ENST00000553569 SAMD7Q7Z3H4 446 aa28.23■■■□□ 2.11
TDP1-206ENST00000553569 GMLQ99445 158 aa28.23■■■□□ 2.11
TDP1-206ENST00000553569 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.23■■■□□ 2.11
TDP1-206ENST00000553569 MYH13Q9UKX3 1938 aa28.23■■■□□ 2.11
TDP1-206ENST00000553569 MYO3BQ8WXR4 1341 aa28.22■■■□□ 2.11
TDP1-206ENST00000553569 TBC1D10BQ4KMP7 808 aaPredicted RBP28.22■■■□□ 2.11
TDP1-206ENST00000553569 FRAT2O75474 233 aaPredicted RBP28.21■■■□□ 2.11
TDP1-206ENST00000553569 SASH1O94885 1247 aa28.21■■■□□ 2.11
TDP1-206ENST00000553569 USP17L8P0C7I0 530 aa28.21■■■□□ 2.11
TDP1-206ENST00000553569 ADORA1P30542 326 aa28.21■■■□□ 2.11
TDP1-206ENST00000553569 RBM26Q5T8P6 1007 aaKnown RBP28.21■■■□□ 2.11
TDP1-206ENST00000553569 RPAP2Q8IXW5 612 aaPredicted RBP28.21■■■□□ 2.11
TDP1-206ENST00000553569 AKAP2Q9Y2D5 859 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms