RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 UBE3BQ7Z3V4 1068 aa20.5■□□□□ 0.87
SYNE3-202ENST00000553340 DSCC1Q9BVC3 393 aa20.5■□□□□ 0.87
SYNE3-202ENST00000553340 HELLSQ9NRZ9 838 aa20.5■□□□□ 0.87
SYNE3-202ENST00000553340 TRMT1Q9NXH9 659 aaKnown RBP20.5■□□□□ 0.87
SYNE3-202ENST00000553340 A0A087WWV3 80 aa20.49■□□□□ 0.87
SYNE3-202ENST00000553340 ERO1AQ96HE7 468 aa20.49■□□□□ 0.87
SYNE3-202ENST00000553340 SALL1Q9NSC2 1324 aa20.49■□□□□ 0.87
SYNE3-202ENST00000553340 MRPS27Q92552 414 aaKnown RBP20.49■□□□□ 0.87
SYNE3-202ENST00000553340 SDF4Q9BRK5 362 aa20.49■□□□□ 0.87
SYNE3-202ENST00000553340 NAP1L2Q9ULW6 460 aaPredicted RBP20.49■□□□□ 0.87
SYNE3-202ENST00000553340 ADAMTS7Q9UKP4 1686 aa20.49■□□□□ 0.87
SYNE3-202ENST00000553340 LAMA4Q16363 1823 aa20.49■□□□□ 0.87
SYNE3-202ENST00000553340 IMPACTQ9P2X3 320 aa20.48■□□□□ 0.87
SYNE3-202ENST00000553340 PALLDQ8WX93 1383 aa20.48■□□□□ 0.87
SYNE3-202ENST00000553340 IGSF3O75054 1194 aa20.48■□□□□ 0.87
SYNE3-202ENST00000553340 FMR1NBQ8N0W7 255 aaPredicted RBP20.48■□□□□ 0.87
SYNE3-202ENST00000553340 ZNF274Q96GC6 653 aaPredicted RBP20.48■□□□□ 0.87
SYNE3-202ENST00000553340 SLC52A2Q9HAB3 445 aa20.48■□□□□ 0.87
SYNE3-202ENST00000553340 NCOA5Q9HCD5 579 aaKnown RBP20.48■□□□□ 0.87
SYNE3-202ENST00000553340 GUCY1B3Q02153 619 aa20.47■□□□□ 0.87
SYNE3-202ENST00000553340 ZRSR1Q15695 479 aaKnown RBP20.47■□□□□ 0.87
SYNE3-202ENST00000553340 OSBPL5Q9H0X9 879 aaPredicted RBP20.47■□□□□ 0.87
SYNE3-202ENST00000553340 C5P01031 1676 aa20.47■□□□□ 0.87
SYNE3-202ENST00000553340 ADALQ6DHV7 355 aa20.47■□□□□ 0.87
SYNE3-202ENST00000553340 ZNF771Q7L3S4 317 aaPredicted RBP20.47■□□□□ 0.87
SYNE3-202ENST00000553340 RBM33Q96EV2 1170 aaKnown RBP20.47■□□□□ 0.87
SYNE3-202ENST00000553340 BCL11BQ9C0K0 894 aaPredicted RBP20.47■□□□□ 0.87
SYNE3-202ENST00000553340 PCDHA7Q9UN72 937 aa20.47■□□□□ 0.87
SYNE3-202ENST00000553340 E7EWF7 191 aa20.46■□□□□ 0.87
SYNE3-202ENST00000553340 PDIA3P30101 505 aaKnown RBP20.46■□□□□ 0.87
SYNE3-202ENST00000553340 ILDR1Q86SU0 546 aaPredicted RBP20.46■□□□□ 0.87
SYNE3-202ENST00000553340 ERCC4Q92889 916 aaPredicted RBP20.46■□□□□ 0.87
SYNE3-202ENST00000553340 RTEL1Q9NZ71 1219 aa20.46■□□□□ 0.87
SYNE3-202ENST00000553340 A0A087WZG4 1122 aa20.46■□□□□ 0.87
SYNE3-202ENST00000553340 GOLIM4O00461 696 aa20.46■□□□□ 0.87
SYNE3-202ENST00000553340 SLU7O95391 586 aaKnown RBP20.46■□□□□ 0.87
SYNE3-202ENST00000553340 KMT5BQ4FZB7 885 aa20.46■□□□□ 0.87
SYNE3-202ENST00000553340 TICAM2Q86XR7 235 aa20.46■□□□□ 0.87
SYNE3-202ENST00000553340 FBXW7Q969H0 707 aa20.46■□□□□ 0.87
SYNE3-202ENST00000553340 PAG1Q9NWQ8 432 aa20.46■□□□□ 0.87
SYNE3-202ENST00000553340 CCDC9Q9Y3X0 531 aaKnown RBP20.46■□□□□ 0.87
SYNE3-202ENST00000553340 CARMIL3Q8ND23 1372 aa20.46■□□□□ 0.87
SYNE3-202ENST00000553340 A0A1W2PQ27 194 aa20.45■□□□□ 0.86
SYNE3-202ENST00000553340 A0A1W2PQ64 194 aa20.45■□□□□ 0.86
SYNE3-202ENST00000553340 A0A1W2PQD8 194 aa20.45■□□□□ 0.86
SYNE3-202ENST00000553340 CAMTA1Q9Y6Y1 1673 aa20.45■□□□□ 0.86
SYNE3-202ENST00000553340 NBPF11Q86T75 865 aa20.45■□□□□ 0.86
SYNE3-202ENST00000553340 KRT222Q8N1A0 295 aa20.45■□□□□ 0.86
SYNE3-202ENST00000553340 NFATC2IPQ8NCF5 419 aa20.45■□□□□ 0.86
SYNE3-202ENST00000553340 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.45■□□□□ 0.86
SYNE3-202ENST00000553340 AXIN2Q9Y2T1 843 aa20.45■□□□□ 0.86
SYNE3-202ENST00000553340 V9GYY5 206 aaPredicted RBP20.45■□□□□ 0.86
SYNE3-202ENST00000553340 SLIT3O75094 1523 aa20.45■□□□□ 0.86
SYNE3-202ENST00000553340 LMOD2Q6P5Q4 547 aa20.44■□□□□ 0.86
SYNE3-202ENST00000553340 ZNF496Q96IT1 587 aaPredicted RBP20.44■□□□□ 0.86
SYNE3-202ENST00000553340 NEUROD6Q96NK8 337 aa20.44■□□□□ 0.86
SYNE3-202ENST00000553340 A0A1B0GVL5 298 aa20.44■□□□□ 0.86
SYNE3-202ENST00000553340 PPFIA3O75145 1194 aa20.44■□□□□ 0.86
SYNE3-202ENST00000553340 HSPD1P10809 573 aaKnown RBP20.44■□□□□ 0.86
SYNE3-202ENST00000553340 SF3A1Q15459 793 aaKnown RBP20.44■□□□□ 0.86
SYNE3-202ENST00000553340 SLFNL1Q499Z3 407 aa20.44■□□□□ 0.86
SYNE3-202ENST00000553340 ZMYM1Q5SVZ6 1142 aa20.44■□□□□ 0.86
SYNE3-202ENST00000553340 LRP10Q7Z4F1 713 aa20.44■□□□□ 0.86
SYNE3-202ENST00000553340 BPIFA3Q9BQP9 254 aa20.44■□□□□ 0.86
SYNE3-202ENST00000553340 KIAA1468Q9P260 1216 aa20.44■□□□□ 0.86
SYNE3-202ENST00000553340 CCDC150Q8NCX0 1101 aa20.43■□□□□ 0.86
SYNE3-202ENST00000553340 SNRPA1P09661 255 aaKnown RBP20.43■□□□□ 0.86
SYNE3-202ENST00000553340 NDUFA8P51970 172 aa20.43■□□□□ 0.86
SYNE3-202ENST00000553340 STK38Q15208 465 aa20.43■□□□□ 0.86
SYNE3-202ENST00000553340 ELF2Q15723 593 aa20.43■□□□□ 0.86
SYNE3-202ENST00000553340 RAPGEF4Q8WZA2 1011 aa20.43■□□□□ 0.86
SYNE3-202ENST00000553340 AFDNP55196 1824 aaKnown RBP20.43■□□□□ 0.86
SYNE3-202ENST00000553340 ATP5J2-PTCD1G3V325 749 aa20.42■□□□□ 0.86
SYNE3-202ENST00000553340 PTCD1O75127 700 aaKnown RBP20.42■□□□□ 0.86
SYNE3-202ENST00000553340 DHX8Q14562 1220 aaKnown RBP20.42■□□□□ 0.86
SYNE3-202ENST00000553340 LMBR1LQ6UX01 489 aa20.42■□□□□ 0.86
SYNE3-202ENST00000553340 LINC00301Q8NCQ3 95 aa20.42■□□□□ 0.86
SYNE3-202ENST00000553340 KCNG4Q8TDN1 519 aa20.42■□□□□ 0.86
SYNE3-202ENST00000553340 TPM4P67936 248 aa20.42■□□□□ 0.86
SYNE3-202ENST00000553340 DPCR1Q3MIW9 517 aa20.42■□□□□ 0.86
SYNE3-202ENST00000553340 FBXO38Q6PIJ6 1188 aa20.42■□□□□ 0.86
SYNE3-202ENST00000553340 CHST3Q7LGC8 479 aa20.42■□□□□ 0.86
SYNE3-202ENST00000553340 NRDCO43847 1150 aa20.41■□□□□ 0.86
SYNE3-202ENST00000553340 SMC2O95347 1197 aa20.41■□□□□ 0.86
SYNE3-202ENST00000553340 FDPSP14324 419 aaKnown RBP20.41■□□□□ 0.86
SYNE3-202ENST00000553340 PIP4K2AP48426 406 aaPredicted RBP20.41■□□□□ 0.86
SYNE3-202ENST00000553340 KDM6AO15550 1401 aaPredicted RBP20.41■□□□□ 0.86
SYNE3-202ENST00000553340 ABCC6O95255 1503 aa20.41■□□□□ 0.86
SYNE3-202ENST00000553340 A0A0G2JLW4 131 aa20.41■□□□□ 0.86
SYNE3-202ENST00000553340 E4F1Q66K89 784 aaPredicted RBP20.41■□□□□ 0.86
SYNE3-202ENST00000553340 TTC5Q8N0Z6 440 aa20.41■□□□□ 0.86
SYNE3-202ENST00000553340 XPO4Q9C0E2 1151 aaKnown RBP20.41■□□□□ 0.86
SYNE3-202ENST00000553340 PSDA5PKW4 1024 aaPredicted RBP20.4■□□□□ 0.86
SYNE3-202ENST00000553340 YEATS4O95619 227 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 SLFN14P0C7P3 912 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 SFPQP23246 707 aaKnown RBP eCLIP20.4■□□□□ 0.86
SYNE3-202ENST00000553340 CASP7P55210 303 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 TMC6Q7Z403 805 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 FBXL16Q8N461 479 aa20.4■□□□□ 0.86
SYNE3-202ENST00000553340 IFNKQ9P0W0 207 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms