RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ATP8B2P98198 1209 aa17.57■□□□□ 0.4
PTCH1-226ENST00000553011 PSMD14O00487 310 aa17.56■□□□□ 0.4
PTCH1-226ENST00000553011 PDE8BO95263 885 aa17.56■□□□□ 0.4
PTCH1-226ENST00000553011 VEGFAP15692 232 aaPredicted RBP17.56■□□□□ 0.4
PTCH1-226ENST00000553011 UBE4AQ14139 1066 aa17.56■□□□□ 0.4
PTCH1-226ENST00000553011 C15orf52Q6ZUT6 534 aaKnown RBP17.56■□□□□ 0.4
PTCH1-226ENST00000553011 ZBTB40Q9NUA8 1239 aa17.56■□□□□ 0.4
PTCH1-226ENST00000553011 FBXO3Q9UK99 471 aa17.56■□□□□ 0.4
PTCH1-226ENST00000553011 POLA2Q14181 598 aa17.55■□□□□ 0.4
PTCH1-226ENST00000553011 TNIP1Q15025 636 aa17.55■□□□□ 0.4
PTCH1-226ENST00000553011 CEP85Q6P2H3 762 aa17.55■□□□□ 0.4
PTCH1-226ENST00000553011 SSH3Q8TE77 659 aa17.55■□□□□ 0.4
PTCH1-226ENST00000553011 COA1Q9GZY4 146 aa17.55■□□□□ 0.4
PTCH1-226ENST00000553011 IL15P40933 162 aaPredicted RBP17.54■□□□□ 0.4
PTCH1-226ENST00000553011 GMPSP49915 693 aaPredicted RBP17.54■□□□□ 0.4
PTCH1-226ENST00000553011 SCNN1DP51172 638 aa17.54■□□□□ 0.4
PTCH1-226ENST00000553011 PODNQ7Z5L7 613 aa17.54■□□□□ 0.4
PTCH1-226ENST00000553011 ZBTB12Q9Y330 459 aaPredicted RBP17.54■□□□□ 0.4
PTCH1-226ENST00000553011 MYH13Q9UKX3 1938 aa17.54■□□□□ 0.4
PTCH1-226ENST00000553011 GYG1P46976 350 aa17.53■□□□□ 0.4
PTCH1-226ENST00000553011 CD209Q9NNX6 404 aa17.53■□□□□ 0.4
PTCH1-226ENST00000553011 CEP126Q9P2H0 1117 aa17.53■□□□□ 0.4
PTCH1-226ENST00000553011 IQCA1LA6NCM1 817 aa17.52■□□□□ 0.4
PTCH1-226ENST00000553011 FGFR2P21802 821 aa17.52■□□□□ 0.4
PTCH1-226ENST00000553011 EPS15P42566 896 aa17.52■□□□□ 0.4
PTCH1-226ENST00000553011 PUM3Q15397 648 aaKnown RBP17.52■□□□□ 0.4
PTCH1-226ENST00000553011 ZNF804AQ7Z570 1209 aa17.52■□□□□ 0.4
PTCH1-226ENST00000553011 FAM84BQ96KN1 310 aaPredicted RBP17.52■□□□□ 0.4
PTCH1-226ENST00000553011 CHMP4BQ9H444 224 aaKnown RBP17.52■□□□□ 0.4
PTCH1-226ENST00000553011 TAF1DQ9H5J8 278 aaPredicted RBP17.52■□□□□ 0.4
PTCH1-226ENST00000553011 HACL1Q9UJ83 578 aa17.52■□□□□ 0.4
PTCH1-226ENST00000553011 ARAP2Q8WZ64 1704 aa17.52■□□□□ 0.39
PTCH1-226ENST00000553011 USP17L3A6NCW0 530 aa17.51■□□□□ 0.39
PTCH1-226ENST00000553011 USP17L4A6NCW7 530 aa17.51■□□□□ 0.39
PTCH1-226ENST00000553011 VIL1P09327 827 aaKnown RBP17.51■□□□□ 0.39
PTCH1-226ENST00000553011 LMOD1P29536 600 aaPredicted RBP17.51■□□□□ 0.39
PTCH1-226ENST00000553011 TFCP2Q12800 502 aa17.51■□□□□ 0.39
PTCH1-226ENST00000553011 USP17L1Q7RTZ2 530 aa17.51■□□□□ 0.39
PTCH1-226ENST00000553011 C16orf71Q8IYS4 520 aaPredicted RBP17.51■□□□□ 0.39
PTCH1-226ENST00000553011 FBXW7Q969H0 707 aa17.51■□□□□ 0.39
PTCH1-226ENST00000553011 GPRC5DQ9NZD1 345 aa17.51■□□□□ 0.39
PTCH1-226ENST00000553011 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.51■□□□□ 0.39
PTCH1-226ENST00000553011 SHTN1A0MZ66 631 aa17.5■□□□□ 0.39
PTCH1-226ENST00000553011 SLC5A1P13866 664 aa17.5■□□□□ 0.39
PTCH1-226ENST00000553011 IL1R1P14778 569 aa17.5■□□□□ 0.39
PTCH1-226ENST00000553011 EPHX2P34913 555 aa17.5■□□□□ 0.39
PTCH1-226ENST00000553011 G3BP1Q13283 466 aaKnown RBP eCLIP17.5■□□□□ 0.39
PTCH1-226ENST00000553011 ATP2B3Q16720 1220 aa17.5■□□□□ 0.39
PTCH1-226ENST00000553011 SIRT2Q8IXJ6 389 aa17.5■□□□□ 0.39
PTCH1-226ENST00000553011 CRBNQ96SW2 442 aa17.5■□□□□ 0.39
PTCH1-226ENST00000553011 MXD3Q9BW11 206 aa17.5■□□□□ 0.39
PTCH1-226ENST00000553011 ADAMTSL1Q8N6G6 1762 aa17.49■□□□□ 0.39
PTCH1-226ENST00000553011 SURF6O75683 361 aaKnown RBP17.49■□□□□ 0.39
PTCH1-226ENST00000553011 IFIT1P09914 478 aaKnown RBP17.49■□□□□ 0.39
PTCH1-226ENST00000553011 POTEIP0CG38 1075 aa17.49■□□□□ 0.39
PTCH1-226ENST00000553011 POTEJP0CG39 1038 aa17.49■□□□□ 0.39
PTCH1-226ENST00000553011 HIBADHP31937 336 aaKnown RBP17.49■□□□□ 0.39
PTCH1-226ENST00000553011 GTF2IP78347 998 aa17.49■□□□□ 0.39
PTCH1-226ENST00000553011 DACT2Q5SW24 774 aa17.49■□□□□ 0.39
PTCH1-226ENST00000553011 RSBN1LQ6PCB5 846 aaPredicted RBP17.49■□□□□ 0.39
PTCH1-226ENST00000553011 FBXO33Q7Z6M2 555 aa17.49■□□□□ 0.39
PTCH1-226ENST00000553011 RPAP2Q8IXW5 612 aaPredicted RBP17.49■□□□□ 0.39
PTCH1-226ENST00000553011 LPIN2Q92539 896 aa17.49■□□□□ 0.39
PTCH1-226ENST00000553011 POLR2AP24928 1970 aaKnown RBP17.49■□□□□ 0.39
PTCH1-226ENST00000553011 TOMM70O94826 608 aa17.48■□□□□ 0.39
PTCH1-226ENST00000553011 SASH1O94885 1247 aa17.48■□□□□ 0.39
PTCH1-226ENST00000553011 BCAMP50895 628 aa17.48■□□□□ 0.39
PTCH1-226ENST00000553011 EAPPQ56P03 285 aaPredicted RBP17.48■□□□□ 0.39
PTCH1-226ENST00000553011 TTLL5Q6EMB2 1281 aa17.48■□□□□ 0.39
PTCH1-226ENST00000553011 MICALL2Q8IY33 904 aa17.48■□□□□ 0.39
PTCH1-226ENST00000553011 TDRD7Q8NHU6 1098 aaKnown RBP17.48■□□□□ 0.39
PTCH1-226ENST00000553011 DPF2Q92785 391 aa17.48■□□□□ 0.39
PTCH1-226ENST00000553011 CNOT7Q9UIV1 285 aaKnown RBP17.48■□□□□ 0.39
PTCH1-226ENST00000553011 IQSEC3Q9UPP2 1182 aaPredicted RBP17.48■□□□□ 0.39
PTCH1-226ENST00000553011 JAG2Q9Y219 1238 aa17.48■□□□□ 0.39
PTCH1-226ENST00000553011 NOP58Q9Y2X3 529 aaKnown RBP17.48■□□□□ 0.39
PTCH1-226ENST00000553011 SUPT16HQ9Y5B9 1047 aaKnown RBP17.48■□□□□ 0.39
PTCH1-226ENST00000553011 RPS12P25398 132 aaKnown RBP17.47■□□□□ 0.39
PTCH1-226ENST00000553011 OS9Q13438 667 aaPredicted RBP17.47■□□□□ 0.39
PTCH1-226ENST00000553011 CAVIN4Q5BKX8 364 aa17.47■□□□□ 0.39
PTCH1-226ENST00000553011 STRIP1Q5VSL9 837 aa17.47■□□□□ 0.39
PTCH1-226ENST00000553011 VPS37DQ86XT2 251 aa17.47■□□□□ 0.39
PTCH1-226ENST00000553011 RBM46Q8TBY0 533 aaKnown RBP17.47■□□□□ 0.39
PTCH1-226ENST00000553011 GMLQ99445 158 aa17.47■□□□□ 0.39
PTCH1-226ENST00000553011 EXOC6BQ9Y2D4 811 aa17.47■□□□□ 0.39
PTCH1-226ENST00000553011 ZNF609O15014 1411 aa17.47■□□□□ 0.39
PTCH1-226ENST00000553011 ADORA1P30542 326 aa17.46■□□□□ 0.39
PTCH1-226ENST00000553011 TIMM10P62072 90 aa17.46■□□□□ 0.39
PTCH1-226ENST00000553011 AGBL3Q8NEM8 1001 aa17.46■□□□□ 0.39
PTCH1-226ENST00000553011 ADARB2Q9NS39 739 aaKnown RBP17.46■□□□□ 0.39
PTCH1-226ENST00000553011 A0A1B0GUL7 405 aa17.45■□□□□ 0.38
PTCH1-226ENST00000553011 HMMRO75330 724 aa17.45■□□□□ 0.38
PTCH1-226ENST00000553011 C1QTNF8P60827 252 aa17.45■□□□□ 0.38
PTCH1-226ENST00000553011 TRPM4Q8TD43 1214 aa17.45■□□□□ 0.38
PTCH1-226ENST00000553011 AKAP2Q9Y2D5 859 aa17.45■□□□□ 0.38
PTCH1-226ENST00000553011 H7C1D1 291 aa17.44■□□□□ 0.38
PTCH1-226ENST00000553011 SAMD7Q7Z3H4 446 aa17.44■□□□□ 0.38
PTCH1-226ENST00000553011 PNMA8AQ86V59 439 aaPredicted RBP17.44■□□□□ 0.38
PTCH1-226ENST00000553011 CERS5Q8N5B7 392 aa17.44■□□□□ 0.38
PTCH1-226ENST00000553011 NEUROD6Q96NK8 337 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms