RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CHMP3Q9Y3E7 222 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 ABCA6Q8N139 1617 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 MYO3AQ8NEV4 1616 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 NPHP4O75161 1426 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-208ENST00000551691 AGLP35573 1532 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 LRP6O75581 1613 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L15C9J2P7 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L10C9JJH3 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L13C9JLJ4 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L12C9JPN9 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L11C9JVI0 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L21D6R901 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L18D6R9N7 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L22D6RA61 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L17D6RBQ6 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L19D6RCP7 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L20D6RJB6 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 DYRK3O43781 588 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 ERCC3P19447 782 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP17L24Q0WX57 530 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 NEUROD1Q13562 356 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 C20orf204Q6ZNR8 217 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 ALDH16A1Q8IZ83 802 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 THEMISQ8N1K5 641 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-208ENST00000551691 STK32AQ8WU08 396 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 KRTAP4-8Q9BYQ9 185 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 QTRT2Q9H974 415 aaKnown RBP5.79□□□□□ -1.48
LIMA1-208ENST00000551691 USP35Q9P2H5 1018 aa5.79□□□□□ -1.48
LIMA1-208ENST00000551691 CLTCQ00610 1675 aaKnown RBP5.79□□□□□ -1.48
LIMA1-208ENST00000551691 A2ML1A8K2U0 1454 aa5.78□□□□□ -1.48
LIMA1-208ENST00000551691 ZNF518AQ6AHZ1 1483 aa5.78□□□□□ -1.48
LIMA1-208ENST00000551691 FAM196BA6NMK8 535 aa5.78□□□□□ -1.48
LIMA1-208ENST00000551691 DKK1O94907 266 aa5.78□□□□□ -1.48
LIMA1-208ENST00000551691 KANK4Q5T7N3 995 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-208ENST00000551691 C1orf53Q5VUE5 145 aa5.78□□□□□ -1.48
LIMA1-208ENST00000551691 BTLAQ7Z6A9 289 aa5.78□□□□□ -1.48
LIMA1-208ENST00000551691 JPH1Q9HDC5 661 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-208ENST00000551691 ANKIB1Q9P2G1 1089 aa5.78□□□□□ -1.48
LIMA1-208ENST00000551691 SLC6A14Q9UN76 642 aa5.78□□□□□ -1.48
LIMA1-208ENST00000551691 GPC6Q9Y625 555 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-208ENST00000551691 CTTNBP2Q8WZ74 1663 aa5.78□□□□□ -1.48
LIMA1-208ENST00000551691 ATAD2Q6PL18 1390 aa5.78□□□□□ -1.48
LIMA1-208ENST00000551691 LILRB5O75023 590 aa5.77□□□□□ -1.49
LIMA1-208ENST00000551691 SELPP16109 830 aa5.77□□□□□ -1.49
LIMA1-208ENST00000551691 YY1P25490 414 aa5.77□□□□□ -1.49
LIMA1-208ENST00000551691 PRSS36Q5K4E3 855 aa5.77□□□□□ -1.49
LIMA1-208ENST00000551691 LARGE2Q8N3Y3 721 aa5.77□□□□□ -1.49
LIMA1-208ENST00000551691 PSMG3-AS1Q96PY0 264 aa5.77□□□□□ -1.49
LIMA1-208ENST00000551691 DNAJB12Q9NXW2 375 aaKnown RBP5.77□□□□□ -1.49
LIMA1-208ENST00000551691 NAGPAQ9UK23 515 aa5.77□□□□□ -1.49
LIMA1-208ENST00000551691 ZNF142P52746 1687 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-208ENST00000551691 JCADQ9P266 1359 aa5.77□□□□□ -1.49
LIMA1-208ENST00000551691 MLH3Q9UHC1 1453 aa5.77□□□□□ -1.49
LIMA1-208ENST00000551691 AFF2P51816 1311 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 EP400Q96L91 3159 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 CDK13Q14004 1512 aaKnown RBP5.76□□□□□ -1.49
LIMA1-208ENST00000551691 A0A0A0MRY4 1105 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 NFKB1P19838 968 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 LTKP29376 864 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 HNRNPMP52272 730 aaKnown RBP eCLIP5.76□□□□□ -1.49
LIMA1-208ENST00000551691 HIRAP54198 1017 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-208ENST00000551691 KCNQ4P56696 695 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 PSAPL1Q6NUJ1 521 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 KRT25Q7Z3Z0 450 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 DMRTC2Q8IXT2 367 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-208ENST00000551691 SIX5Q8N196 739 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 HINFPQ9BQA5 517 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 C2orf49Q9BVC5 232 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-208ENST00000551691 PRDM6Q9NQX0 595 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 SLAIN2Q9P270 581 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 ZMIZ1Q9ULJ6 1067 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 XIRP1Q702N8 1843 aaKnown RBP5.76□□□□□ -1.49
LIMA1-208ENST00000551691 KDM5CP41229 1560 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 REREQ9P2R6 1566 aa5.76□□□□□ -1.49
LIMA1-208ENST00000551691 RGS12O14924 1447 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 ABCC1P33527 1531 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 RNF17Q9BXT8 1623 aaKnown RBP5.75□□□□□ -1.49
LIMA1-208ENST00000551691 POLR1AO95602 1720 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-208ENST00000551691 CPB1P15086 417 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 ATP2B4P23634 1241 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 MLLT1Q03111 559 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-208ENST00000551691 PLAURQ03405 335 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 MBTPS1Q14703 1052 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 PNMA5Q96PV4 448 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 NACC1Q96RE7 527 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 KLK14Q9P0G3 267 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 BCS1LQ9Y276 419 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 TNRQ92752 1358 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 ROBO1Q9Y6N7 1651 aa5.75□□□□□ -1.49
LIMA1-208ENST00000551691 M0R2N6 131 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 ABL1P00519 1130 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 GRNP28799 593 aaKnown RBP5.74□□□□□ -1.49
LIMA1-208ENST00000551691 RBM6P78332 1123 aaKnown RBP5.74□□□□□ -1.49
LIMA1-208ENST00000551691 CRTC2Q53ET0 693 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-208ENST00000551691 DEFB132Q7Z7B7 95 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 ANKMY2Q8IV38 441 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 BCL2L13Q9BXK5 485 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 GSX2Q9BZM3 304 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 USP21Q9UK80 565 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 USP20Q9Y2K6 914 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms