RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 RBSNQ9H1K0 784 aa4.45□□□□□ -1.7
PTCH1-223ENST00000551623 KCNK4Q9NYG8 393 aa4.45□□□□□ -1.7
PTCH1-223ENST00000551623 LEMD3Q9Y2U8 911 aa4.45□□□□□ -1.7
PTCH1-223ENST00000551623 CUX1P39880 1505 aa4.45□□□□□ -1.7
PTCH1-223ENST00000551623 PBRM1Q86U86 1689 aa4.45□□□□□ -1.7
PTCH1-223ENST00000551623 GLI2P10070 1586 aa4.44□□□□□ -1.7
PTCH1-223ENST00000551623 ADAMTS12P58397 1594 aa4.44□□□□□ -1.7
PTCH1-223ENST00000551623 LINC01387J3KSC0 135 aa4.44□□□□□ -1.7
PTCH1-223ENST00000551623 SCG3Q8WXD2 468 aaKnown RBP4.44□□□□□ -1.7
PTCH1-223ENST00000551623 BCANQ96GW7 911 aa4.44□□□□□ -1.7
PTCH1-223ENST00000551623 MFSD14AQ96MC6 490 aa4.44□□□□□ -1.7
PTCH1-223ENST00000551623 NSUN5Q96P11 429 aaKnown RBP4.44□□□□□ -1.7
PTCH1-223ENST00000551623 ADCY10Q96PN6 1610 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 TM4SF5O14894 197 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 SART1O43290 800 aaKnown RBP4.43□□□□□ -1.7
PTCH1-223ENST00000551623 PSAPP07602 524 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 FOSL1P15407 271 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 DUOXA2Q1HG44 320 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 TXNDC11Q6PKC3 985 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 SIX5Q8N196 739 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 LARGE2Q8N3Y3 721 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 GIMAP7Q8NHV1 300 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 ALG2Q9H553 416 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 ATG3Q9NT62 314 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 HIF3AQ9Y2N7 669 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 FHAD1B1AJZ9 1412 aa4.43□□□□□ -1.7
PTCH1-223ENST00000551623 PRG4Q92954 1404 aaPredicted RBP4.43□□□□□ -1.7
PTCH1-223ENST00000551623 PALM3A6NDB9 673 aaPredicted RBP4.42□□□□□ -1.7
PTCH1-223ENST00000551623 PAPLNO95428 1278 aa4.42□□□□□ -1.7
PTCH1-223ENST00000551623 EGFRP00533 1210 aa4.42□□□□□ -1.7
PTCH1-223ENST00000551623 HOXD8P13378 290 aaPredicted RBP4.42□□□□□ -1.7
PTCH1-223ENST00000551623 RASA1P20936 1047 aa4.42□□□□□ -1.7
PTCH1-223ENST00000551623 SOX18P35713 384 aa4.42□□□□□ -1.7
PTCH1-223ENST00000551623 PREPP48147 710 aa4.42□□□□□ -1.7
PTCH1-223ENST00000551623 NEUROD2Q15784 382 aa4.42□□□□□ -1.7
PTCH1-223ENST00000551623 OGFOD1Q8N543 542 aa4.42□□□□□ -1.7
PTCH1-223ENST00000551623 COL26A1Q96A83 441 aa4.42□□□□□ -1.7
PTCH1-223ENST00000551623 KLK14Q9P0G3 267 aa4.42□□□□□ -1.7
PTCH1-223ENST00000551623 TOP2BQ02880 1626 aa4.42□□□□□ -1.7
PTCH1-223ENST00000551623 PPRC1Q5VV67 1664 aaKnown RBP4.41□□□□□ -1.7
PTCH1-223ENST00000551623 MMP20O60882 483 aa4.41□□□□□ -1.7
PTCH1-223ENST00000551623 F13BP05160 661 aa4.41□□□□□ -1.7
PTCH1-223ENST00000551623 CPSF6Q16630 551 aaKnown RBP eCLIP4.41□□□□□ -1.7
PTCH1-223ENST00000551623 ANKRD34AQ69YU3 496 aa4.41□□□□□ -1.7
PTCH1-223ENST00000551623 PLEKHM2Q8IWE5 1019 aa4.41□□□□□ -1.7
PTCH1-223ENST00000551623 KLHL23Q8NBE8 558 aa4.41□□□□□ -1.7
PTCH1-223ENST00000551623 AGBL5Q8NDL9 886 aa4.41□□□□□ -1.7
PTCH1-223ENST00000551623 FOXD4L4Q8WXT5 416 aaPredicted RBP4.41□□□□□ -1.7
PTCH1-223ENST00000551623 CARD10Q9BWT7 1032 aa4.41□□□□□ -1.7
PTCH1-223ENST00000551623 OSBPL1AQ9BXW6 950 aa4.41□□□□□ -1.7
PTCH1-223ENST00000551623 ERICH3Q5RHP9 1530 aa4.41□□□□□ -1.7
PTCH1-223ENST00000551623 RUSC2Q8N2Y8 1516 aa4.41□□□□□ -1.7
PTCH1-223ENST00000551623 USP17L3A6NCW0 530 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 USP17L4A6NCW7 530 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 FSCN2O14926 492 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 XYLBO75191 536 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 MICAL2O94851 1124 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 DKK1O94907 266 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 PKN1Q16512 942 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 KRTAP5-3Q6L8H2 238 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 USP17L2Q6R6M4 530 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 USP17L1Q7RTZ2 530 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 FBXL6Q8N531 539 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 UBASH3BQ8TF42 649 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 ZNF594Q96JF6 807 aaPredicted RBP4.4□□□□□ -1.71
PTCH1-223ENST00000551623 USP20Q9Y2K6 914 aa4.4□□□□□ -1.71
PTCH1-223ENST00000551623 RTCBQ9Y3I0 505 aaKnown RBP4.4□□□□□ -1.71
PTCH1-223ENST00000551623 RBM19Q9Y4C8 960 aaKnown RBP4.4□□□□□ -1.71
PTCH1-223ENST00000551623 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.4□□□□□ -1.71
PTCH1-223ENST00000551623 PLB1Q6P1J6 1458 aa4.39□□□□□ -1.71
PTCH1-223ENST00000551623 OPLAHO14841 1288 aa4.39□□□□□ -1.71
PTCH1-223ENST00000551623 DDX3YO15523 660 aaKnown RBP4.39□□□□□ -1.71
PTCH1-223ENST00000551623 SLC24A1O60721 1099 aa4.39□□□□□ -1.71
PTCH1-223ENST00000551623 ADAM11O75078 769 aa4.39□□□□□ -1.71
PTCH1-223ENST00000551623 FARP2O94887 1054 aaPredicted RBP4.39□□□□□ -1.71
PTCH1-223ENST00000551623 ZNF865P0CJ78 1059 aaPredicted RBP4.39□□□□□ -1.71
PTCH1-223ENST00000551623 MAP4P27816 1152 aaKnown RBP4.39□□□□□ -1.71
PTCH1-223ENST00000551623 CDC27P30260 824 aa4.39□□□□□ -1.71
PTCH1-223ENST00000551623 DGKZQ13574 1117 aa4.39□□□□□ -1.71
PTCH1-223ENST00000551623 KRTAP19-4Q3LI73 84 aa4.39□□□□□ -1.71
PTCH1-223ENST00000551623 FLCNQ8NFG4 579 aa4.39□□□□□ -1.71
PTCH1-223ENST00000551623 LACRTQ9GZZ8 138 aa4.39□□□□□ -1.71
PTCH1-223ENST00000551623 BSDC1Q9NW68 430 aaPredicted RBP4.39□□□□□ -1.71
PTCH1-223ENST00000551623 ABCC2Q92887 1545 aa4.39□□□□□ -1.71
PTCH1-223ENST00000551623 TEX14Q8IWB6 1497 aa4.38□□□□□ -1.71
PTCH1-223ENST00000551623 CDC25BP30305 580 aa4.38□□□□□ -1.71
PTCH1-223ENST00000551623 CEP135Q66GS9 1140 aa4.38□□□□□ -1.71
PTCH1-223ENST00000551623 FAM117BQ6P1L5 589 aa4.38□□□□□ -1.71
PTCH1-223ENST00000551623 METTL22Q9BUU2 404 aaPredicted RBP4.38□□□□□ -1.71
PTCH1-223ENST00000551623 RNF208Q9H0X6 261 aa4.38□□□□□ -1.71
PTCH1-223ENST00000551623 PAK6Q9NQU5 681 aaPredicted RBP4.38□□□□□ -1.71
PTCH1-223ENST00000551623 MAP3K4Q9Y6R4 1608 aa4.38□□□□□ -1.71
PTCH1-223ENST00000551623 CARMIL2Q6F5E8 1435 aa4.38□□□□□ -1.71
PTCH1-223ENST00000551623 UHRF1BP1LA0JNW5 1464 aa4.37□□□□□ -1.71
PTCH1-223ENST00000551623 KIAA0586Q9BVV6 1533 aa4.37□□□□□ -1.71
PTCH1-223ENST00000551623 BIN1O00499 593 aa4.37□□□□□ -1.71
PTCH1-223ENST00000551623 GAS2O43903 313 aaKnown RBP4.37□□□□□ -1.71
PTCH1-223ENST00000551623 SGO2Q562F6 1265 aa4.37□□□□□ -1.71
PTCH1-223ENST00000551623 FDX2Q6P4F2 183 aa4.37□□□□□ -1.71
PTCH1-223ENST00000551623 RGL4Q8IZJ4 473 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms