RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 SLC10A3P09131 477 aa16.48■□□□□ 0.23
PTCH1-221ENST00000550914 TWISTNBQ3B726 338 aaPredicted RBP16.48■□□□□ 0.23
PTCH1-221ENST00000550914 ANGEL2Q5VTE6 544 aaKnown RBP16.48■□□□□ 0.23
PTCH1-221ENST00000550914 WWC1Q8IX03 1113 aa16.48■□□□□ 0.23
PTCH1-221ENST00000550914 REM2Q8IYK8 340 aaPredicted RBP16.48■□□□□ 0.23
PTCH1-221ENST00000550914 PLA2G12BQ9BX93 195 aa16.48■□□□□ 0.23
PTCH1-221ENST00000550914 GREM2Q9H772 168 aa16.48■□□□□ 0.23
PTCH1-221ENST00000550914 CCT4P50991 539 aaKnown RBP16.47■□□□□ 0.23
PTCH1-221ENST00000550914 KIF23Q02241 960 aaPredicted RBP16.47■□□□□ 0.23
PTCH1-221ENST00000550914 CWF19L2Q2TBE0 894 aaKnown RBP16.47■□□□□ 0.23
PTCH1-221ENST00000550914 LEMD3Q9Y2U8 911 aa16.47■□□□□ 0.23
PTCH1-221ENST00000550914 PDE4DIPQ5VU43 2346 aa16.47■□□□□ 0.23
PTCH1-221ENST00000550914 MYO3BQ8WXR4 1341 aa16.46■□□□□ 0.23
PTCH1-221ENST00000550914 TNRC18O15417 2968 aaPredicted RBP16.46■□□□□ 0.23
PTCH1-221ENST00000550914 SLC4A2P04920 1241 aa16.46■□□□□ 0.23
PTCH1-221ENST00000550914 STRIP1Q5VSL9 837 aa16.46■□□□□ 0.23
PTCH1-221ENST00000550914 UBE3BQ7Z3V4 1068 aa16.46■□□□□ 0.23
PTCH1-221ENST00000550914 COA1Q9GZY4 146 aa16.46■□□□□ 0.23
PTCH1-221ENST00000550914 IGHMBP2P38935 993 aaKnown RBP16.45■□□□□ 0.22
PTCH1-221ENST00000550914 DGKZQ13574 1117 aa16.45■□□□□ 0.22
PTCH1-221ENST00000550914 GCKRQ14397 625 aa16.45■□□□□ 0.22
PTCH1-221ENST00000550914 FAM161AQ3B820 660 aa16.45■□□□□ 0.22
PTCH1-221ENST00000550914 DACT2Q5SW24 774 aa16.45■□□□□ 0.22
PTCH1-221ENST00000550914 G2E3Q7L622 706 aa16.45■□□□□ 0.22
PTCH1-221ENST00000550914 OGFOD1Q8N543 542 aa16.45■□□□□ 0.22
PTCH1-221ENST00000550914 ANKRD2Q9GZV1 360 aa16.45■□□□□ 0.22
PTCH1-221ENST00000550914 MLLT1Q03111 559 aaPredicted RBP16.44■□□□□ 0.22
PTCH1-221ENST00000550914 FLIIQ13045 1269 aa16.44■□□□□ 0.22
PTCH1-221ENST00000550914 CSRNP1Q96S65 589 aa16.44■□□□□ 0.22
PTCH1-221ENST00000550914 MYH16Q9H6N6 1097 aa16.44■□□□□ 0.22
PTCH1-221ENST00000550914 RNF186Q9NXI6 227 aa16.44■□□□□ 0.22
PTCH1-221ENST00000550914 WTIPA6NIX2 430 aaPredicted RBP16.43■□□□□ 0.22
PTCH1-221ENST00000550914 CSF1RP07333 972 aa16.43■□□□□ 0.22
PTCH1-221ENST00000550914 ITGA6P23229 1130 aa16.43■□□□□ 0.22
PTCH1-221ENST00000550914 CASP7P55210 303 aa16.43■□□□□ 0.22
PTCH1-221ENST00000550914 CCDC184Q52MB2 194 aa16.43■□□□□ 0.22
PTCH1-221ENST00000550914 RASAL3Q86YV0 1011 aa16.43■□□□□ 0.22
PTCH1-221ENST00000550914 LINS1Q8NG48 757 aa16.43■□□□□ 0.22
PTCH1-221ENST00000550914 ZNF804BA4D1E1 1349 aa16.43■□□□□ 0.22
PTCH1-221ENST00000550914 TRPA1O75762 1119 aa16.42■□□□□ 0.22
PTCH1-221ENST00000550914 NBPF9Q3BBW0 867 aa16.42■□□□□ 0.22
PTCH1-221ENST00000550914 DNAAF4Q8WXU2 420 aa16.42■□□□□ 0.22
PTCH1-221ENST00000550914 MPHOSPH8Q99549 860 aa16.42■□□□□ 0.22
PTCH1-221ENST00000550914 WNT10BO00744 389 aa16.41■□□□□ 0.22
PTCH1-221ENST00000550914 FKBP5Q13451 457 aaPredicted RBP16.41■□□□□ 0.22
PTCH1-221ENST00000550914 TXNRD3Q86VQ6 643 aa16.41■□□□□ 0.22
PTCH1-221ENST00000550914 WDR63Q8IWG1 891 aa16.41■□□□□ 0.22
PTCH1-221ENST00000550914 FANCIQ9NVI1 1328 aa16.41■□□□□ 0.22
PTCH1-221ENST00000550914 A0A1B0GUL6 1792 aa16.41■□□□□ 0.22
PTCH1-221ENST00000550914 TTLL5Q6EMB2 1281 aa16.4■□□□□ 0.22
PTCH1-221ENST00000550914 ECM29Q5VYK3 1845 aa16.4■□□□□ 0.22
PTCH1-221ENST00000550914 NF2P35240 595 aa16.39■□□□□ 0.21
PTCH1-221ENST00000550914 C15orf52Q6ZUT6 534 aaKnown RBP16.39■□□□□ 0.21
PTCH1-221ENST00000550914 FBXW7Q969H0 707 aa16.39■□□□□ 0.21
PTCH1-221ENST00000550914 MXD3Q9BW11 206 aa16.39■□□□□ 0.21
PTCH1-221ENST00000550914 HDAC9Q9UKV0 1011 aa16.39■□□□□ 0.21
PTCH1-221ENST00000550914 COL1A1P02452 1464 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-221ENST00000550914 ANKRD18BA2A2Z9 1011 aa16.38■□□□□ 0.21
PTCH1-221ENST00000550914 VAMP4O75379 141 aa16.38■□□□□ 0.21
PTCH1-221ENST00000550914 CHRNDQ07001 517 aa16.38■□□□□ 0.21
PTCH1-221ENST00000550914 APOBEC3FQ8IUX4 373 aaKnown RBP16.38■□□□□ 0.21
PTCH1-221ENST00000550914 ZBED3Q96IU2 234 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-221ENST00000550914 UBE2Q2LH0YL09 131 aa16.37■□□□□ 0.21
PTCH1-221ENST00000550914 KLRK1P26718 216 aa16.37■□□□□ 0.21
PTCH1-221ENST00000550914 KCNJ4P48050 445 aa16.37■□□□□ 0.21
PTCH1-221ENST00000550914 MRS2Q9HD23 443 aa16.37■□□□□ 0.21
PTCH1-221ENST00000550914 GTF2IP78347 998 aa16.36■□□□□ 0.21
PTCH1-221ENST00000550914 IFIT5Q13325 482 aaKnown RBP16.36■□□□□ 0.21
PTCH1-221ENST00000550914 NOM1Q5C9Z4 860 aaKnown RBP16.36■□□□□ 0.21
PTCH1-221ENST00000550914 PRAMEF18Q5VWM3 479 aa16.36■□□□□ 0.21
PTCH1-221ENST00000550914 MOB2Q70IA6 237 aa16.36■□□□□ 0.21
PTCH1-221ENST00000550914 CTU1Q7Z7A3 348 aaKnown RBP16.36■□□□□ 0.21
PTCH1-221ENST00000550914 CD209Q9NNX6 404 aa16.36■□□□□ 0.21
PTCH1-221ENST00000550914 SCAF8Q9UPN6 1271 aaKnown RBP16.36■□□□□ 0.21
PTCH1-221ENST00000550914 IRS2Q9Y4H2 1338 aa16.36■□□□□ 0.21
PTCH1-221ENST00000550914 SASH1O94885 1247 aa16.35■□□□□ 0.21
PTCH1-221ENST00000550914 TM4SF4P48230 202 aa16.35■□□□□ 0.21
PTCH1-221ENST00000550914 FOXO4P98177 505 aa16.35■□□□□ 0.21
PTCH1-221ENST00000550914 TTLL12Q14166 644 aaPredicted RBP16.35■□□□□ 0.21
PTCH1-221ENST00000550914 BEND3Q5T5X7 828 aa16.35■□□□□ 0.21
PTCH1-221ENST00000550914 ARMC9Q7Z3E5 817 aa16.35■□□□□ 0.21
PTCH1-221ENST00000550914 KIAA0825Q8IV33 1275 aa16.35■□□□□ 0.21
PTCH1-221ENST00000550914 MTMR14Q8NCE2 650 aa16.35■□□□□ 0.21
PTCH1-221ENST00000550914 LAMB1P07942 1786 aa16.34■□□□□ 0.21
PTCH1-221ENST00000550914 FKBP1AP62942 108 aaKnown RBP16.34■□□□□ 0.21
PTCH1-221ENST00000550914 EXOSC9Q06265 439 aaKnown RBP16.34■□□□□ 0.21
PTCH1-221ENST00000550914 PKN2Q16513 984 aaKnown RBP16.34■□□□□ 0.21
PTCH1-221ENST00000550914 IL1R1P14778 569 aa16.33■□□□□ 0.2
PTCH1-221ENST00000550914 SREBF2Q12772 1141 aa16.33■□□□□ 0.2
PTCH1-221ENST00000550914 DLGAP5Q15398 846 aa16.33■□□□□ 0.2
PTCH1-221ENST00000550914 LDLRAD1Q5T700 205 aa16.33■□□□□ 0.2
PTCH1-221ENST00000550914 ZNF804AQ7Z570 1209 aa16.33■□□□□ 0.2
PTCH1-221ENST00000550914 CFHR5Q9BXR6 569 aa16.33■□□□□ 0.2
PTCH1-221ENST00000550914 PPP2R3BQ9Y5P8 575 aa16.33■□□□□ 0.2
PTCH1-221ENST00000550914 ANP32CO43423 234 aa16.32■□□□□ 0.2
PTCH1-221ENST00000550914 CERS5Q8N5B7 392 aa16.32■□□□□ 0.2
PTCH1-221ENST00000550914 UNCXA6NJT0 531 aa16.31■□□□□ 0.2
PTCH1-221ENST00000550914 F6X3S4 739 aa16.31■□□□□ 0.2
PTCH1-221ENST00000550914 GRM8O00222 908 aa16.31■□□□□ 0.2
PTCH1-221ENST00000550914 TAF5LO75529 589 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms