RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 USP48Q86UV5 1035 aa9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 IL17REQ8NFR9 667 aa9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 GAS2L2Q8NHY3 880 aa9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 TMX4Q9H1E5 349 aaPredicted RBP9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 RNF186Q9NXI6 227 aa9.14□□□□□ -0.95
DEPDC4-208ENST00000549341 CASP8AP2Q9UKL3 1982 aa9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 GPTP24298 496 aa9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 BCAMP50895 628 aa9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 ZNF157P51786 506 aaPredicted RBP9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 HIRAP54198 1017 aaPredicted RBP9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 CALD1Q05682 793 aaKnown RBP9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 CXCL9Q07325 125 aa9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 LMOD3Q0VAK6 560 aa9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 CCDC27Q2M243 656 aa9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 RGMBQ6NW40 437 aa9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 RBM17Q96I25 401 aaKnown RBP9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 ZNRF3Q9ULT6 936 aa9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 SUPT16HQ9Y5B9 1047 aaKnown RBP9.13□□□□□ -0.95
DEPDC4-208ENST00000549341 FAM155AB1AL88 458 aaPredicted RBP9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 NBPF26B4DH59 902 aa9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 ADM5C9JUS6 153 aa9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 PROX2Q3B8N5 592 aa9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 NBPF10Q6P3W6 841 aaKnown RBP9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 KRT26Q7Z3Y9 468 aa9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 WDR63Q8IWG1 891 aa9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 GCC1Q96CN9 775 aa9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 ZFRQ96KR1 1074 aaKnown RBP9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 NYXQ9GZU5 481 aa9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 GBA2Q9HCG7 927 aaPredicted RBP9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 HDAC9Q9UKV0 1011 aa9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 PCDHGA10Q9Y5H3 936 aa9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 COL3A1P02461 1466 aaPredicted RBP9.12□□□□□ -0.95
DEPDC4-208ENST00000549341 CDHR2Q9BYE9 1310 aa9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 SNRPA1P09661 255 aaKnown RBP9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 TBC1D10BQ4KMP7 808 aaPredicted RBP9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 HABP4Q5JVS0 413 aaKnown RBP9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 TYW1BQ6NUM6 668 aa9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 DPP8Q6V1X1 898 aaPredicted RBP9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 ZC3H15Q8WU90 426 aaKnown RBP9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 CCDC102AQ96A19 550 aa9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 DDX27Q96GQ7 796 aaKnown RBP9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 MYH16Q9H6N6 1097 aa9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 RIC1Q4ADV7 1423 aa9.11□□□□□ -0.95
DEPDC4-208ENST00000549341 MKI67P46013 3256 aaKnown RBP9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 H7C1D1 291 aa9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 SLC10A3P09131 477 aa9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 NEUROD2Q15784 382 aa9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 GRIPAP1Q4V328 841 aa9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 KIF6Q6ZMV9 814 aa9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 C2orf69Q8N8R5 385 aa9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 LARP6Q9BRS8 491 aaKnown RBP9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 ZBTB3Q9H5J0 574 aa9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 KIAA1468Q9P260 1216 aa9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 CNOT7Q9UIV1 285 aaKnown RBP9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 RCAN3Q9UKA8 241 aa9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 CEMIPQ8WUJ3 1361 aa9.1□□□□□ -0.95
DEPDC4-208ENST00000549341 UBN2Q6ZU65 1347 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 ZNF521Q96K83 1311 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 COL9A1P20849 921 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 HOXA10P31260 410 aaPredicted RBP9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 PRKAR2BP31323 418 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 TMPOP42166 694 aaKnown RBP9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 SLFN5Q08AF3 891 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 TNIP1Q15025 636 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 RBM26Q5T8P6 1007 aaKnown RBP9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 MCM10Q7L590 875 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 SAMD7Q7Z3H4 446 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 WWC1Q8IX03 1113 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 SUPT20HQ8NEM7 779 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 PGAP2Q9UHJ9 254 aa9.09□□□□□ -0.95
DEPDC4-208ENST00000549341 CUL9Q8IWT3 2517 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 ABCC4O15439 1325 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 IL16Q14005 1332 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 EGFRP00533 1210 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 RIPK4P57078 832 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 SUSD4Q5VX71 490 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 TRAF7Q6Q0C0 670 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 ZNF296Q8WUU4 475 aaPredicted RBP9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 DCPSQ96C86 337 aaKnown RBP9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 CRAMP1Q96RY5 1269 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 CSRNP1Q96S65 589 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 PLEKHF1Q96S99 279 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 RSPH6AQ9H0K4 717 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 GGA3Q9NZ52 723 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 ATP6V0A2Q9Y487 856 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 TRPM7Q96QT4 1865 aa9.08□□□□□ -0.96
DEPDC4-208ENST00000549341 HTTP42858 3142 aa9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 YDJCA8MPS7 323 aa9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 NTSR2O95665 410 aa9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 TBC1D8O95759 1140 aa9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 MYL6BP14649 208 aa9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 KIAA2012Q0VF49 1180 aa9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 NFE2L2Q16236 605 aa9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 TTLL7Q6ZT98 887 aa9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 RASAL3Q86YV0 1011 aa9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 MPNDQ8N594 471 aa9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 RTF1Q92541 710 aaKnown RBP9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 TSR3Q9UJK0 312 aaKnown RBP9.07□□□□□ -0.96
DEPDC4-208ENST00000549341 IBTKQ9P2D0 1353 aaPredicted RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms