RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 SLC10A3P09131 477 aa16.48■□□□□ 0.23
PTCH1-218ENST00000548945 TWISTNBQ3B726 338 aaPredicted RBP16.48■□□□□ 0.23
PTCH1-218ENST00000548945 ANGEL2Q5VTE6 544 aaKnown RBP16.48■□□□□ 0.23
PTCH1-218ENST00000548945 WWC1Q8IX03 1113 aa16.48■□□□□ 0.23
PTCH1-218ENST00000548945 REM2Q8IYK8 340 aaPredicted RBP16.48■□□□□ 0.23
PTCH1-218ENST00000548945 PLA2G12BQ9BX93 195 aa16.48■□□□□ 0.23
PTCH1-218ENST00000548945 GREM2Q9H772 168 aa16.48■□□□□ 0.23
PTCH1-218ENST00000548945 CCT4P50991 539 aaKnown RBP16.47■□□□□ 0.23
PTCH1-218ENST00000548945 KIF23Q02241 960 aaPredicted RBP16.47■□□□□ 0.23
PTCH1-218ENST00000548945 CWF19L2Q2TBE0 894 aaKnown RBP16.47■□□□□ 0.23
PTCH1-218ENST00000548945 LEMD3Q9Y2U8 911 aa16.47■□□□□ 0.23
PTCH1-218ENST00000548945 PDE4DIPQ5VU43 2346 aa16.47■□□□□ 0.23
PTCH1-218ENST00000548945 MYO3BQ8WXR4 1341 aa16.46■□□□□ 0.23
PTCH1-218ENST00000548945 TNRC18O15417 2968 aaPredicted RBP16.46■□□□□ 0.23
PTCH1-218ENST00000548945 SLC4A2P04920 1241 aa16.46■□□□□ 0.23
PTCH1-218ENST00000548945 STRIP1Q5VSL9 837 aa16.46■□□□□ 0.23
PTCH1-218ENST00000548945 UBE3BQ7Z3V4 1068 aa16.46■□□□□ 0.23
PTCH1-218ENST00000548945 COA1Q9GZY4 146 aa16.46■□□□□ 0.23
PTCH1-218ENST00000548945 IGHMBP2P38935 993 aaKnown RBP16.45■□□□□ 0.22
PTCH1-218ENST00000548945 DGKZQ13574 1117 aa16.45■□□□□ 0.22
PTCH1-218ENST00000548945 GCKRQ14397 625 aa16.45■□□□□ 0.22
PTCH1-218ENST00000548945 FAM161AQ3B820 660 aa16.45■□□□□ 0.22
PTCH1-218ENST00000548945 DACT2Q5SW24 774 aa16.45■□□□□ 0.22
PTCH1-218ENST00000548945 G2E3Q7L622 706 aa16.45■□□□□ 0.22
PTCH1-218ENST00000548945 OGFOD1Q8N543 542 aa16.45■□□□□ 0.22
PTCH1-218ENST00000548945 ANKRD2Q9GZV1 360 aa16.45■□□□□ 0.22
PTCH1-218ENST00000548945 MLLT1Q03111 559 aaPredicted RBP16.44■□□□□ 0.22
PTCH1-218ENST00000548945 FLIIQ13045 1269 aa16.44■□□□□ 0.22
PTCH1-218ENST00000548945 CSRNP1Q96S65 589 aa16.44■□□□□ 0.22
PTCH1-218ENST00000548945 MYH16Q9H6N6 1097 aa16.44■□□□□ 0.22
PTCH1-218ENST00000548945 RNF186Q9NXI6 227 aa16.44■□□□□ 0.22
PTCH1-218ENST00000548945 WTIPA6NIX2 430 aaPredicted RBP16.43■□□□□ 0.22
PTCH1-218ENST00000548945 CSF1RP07333 972 aa16.43■□□□□ 0.22
PTCH1-218ENST00000548945 ITGA6P23229 1130 aa16.43■□□□□ 0.22
PTCH1-218ENST00000548945 CASP7P55210 303 aa16.43■□□□□ 0.22
PTCH1-218ENST00000548945 CCDC184Q52MB2 194 aa16.43■□□□□ 0.22
PTCH1-218ENST00000548945 RASAL3Q86YV0 1011 aa16.43■□□□□ 0.22
PTCH1-218ENST00000548945 LINS1Q8NG48 757 aa16.43■□□□□ 0.22
PTCH1-218ENST00000548945 ZNF804BA4D1E1 1349 aa16.43■□□□□ 0.22
PTCH1-218ENST00000548945 TRPA1O75762 1119 aa16.42■□□□□ 0.22
PTCH1-218ENST00000548945 NBPF9Q3BBW0 867 aa16.42■□□□□ 0.22
PTCH1-218ENST00000548945 DNAAF4Q8WXU2 420 aa16.42■□□□□ 0.22
PTCH1-218ENST00000548945 MPHOSPH8Q99549 860 aa16.42■□□□□ 0.22
PTCH1-218ENST00000548945 WNT10BO00744 389 aa16.41■□□□□ 0.22
PTCH1-218ENST00000548945 FKBP5Q13451 457 aaPredicted RBP16.41■□□□□ 0.22
PTCH1-218ENST00000548945 TXNRD3Q86VQ6 643 aa16.41■□□□□ 0.22
PTCH1-218ENST00000548945 WDR63Q8IWG1 891 aa16.41■□□□□ 0.22
PTCH1-218ENST00000548945 FANCIQ9NVI1 1328 aa16.41■□□□□ 0.22
PTCH1-218ENST00000548945 A0A1B0GUL6 1792 aa16.41■□□□□ 0.22
PTCH1-218ENST00000548945 TTLL5Q6EMB2 1281 aa16.4■□□□□ 0.22
PTCH1-218ENST00000548945 ECM29Q5VYK3 1845 aa16.4■□□□□ 0.22
PTCH1-218ENST00000548945 NF2P35240 595 aa16.39■□□□□ 0.21
PTCH1-218ENST00000548945 C15orf52Q6ZUT6 534 aaKnown RBP16.39■□□□□ 0.21
PTCH1-218ENST00000548945 FBXW7Q969H0 707 aa16.39■□□□□ 0.21
PTCH1-218ENST00000548945 MXD3Q9BW11 206 aa16.39■□□□□ 0.21
PTCH1-218ENST00000548945 HDAC9Q9UKV0 1011 aa16.39■□□□□ 0.21
PTCH1-218ENST00000548945 COL1A1P02452 1464 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-218ENST00000548945 ANKRD18BA2A2Z9 1011 aa16.38■□□□□ 0.21
PTCH1-218ENST00000548945 VAMP4O75379 141 aa16.38■□□□□ 0.21
PTCH1-218ENST00000548945 CHRNDQ07001 517 aa16.38■□□□□ 0.21
PTCH1-218ENST00000548945 APOBEC3FQ8IUX4 373 aaKnown RBP16.38■□□□□ 0.21
PTCH1-218ENST00000548945 ZBED3Q96IU2 234 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-218ENST00000548945 UBE2Q2LH0YL09 131 aa16.37■□□□□ 0.21
PTCH1-218ENST00000548945 KLRK1P26718 216 aa16.37■□□□□ 0.21
PTCH1-218ENST00000548945 KCNJ4P48050 445 aa16.37■□□□□ 0.21
PTCH1-218ENST00000548945 MRS2Q9HD23 443 aa16.37■□□□□ 0.21
PTCH1-218ENST00000548945 GTF2IP78347 998 aa16.36■□□□□ 0.21
PTCH1-218ENST00000548945 IFIT5Q13325 482 aaKnown RBP16.36■□□□□ 0.21
PTCH1-218ENST00000548945 NOM1Q5C9Z4 860 aaKnown RBP16.36■□□□□ 0.21
PTCH1-218ENST00000548945 PRAMEF18Q5VWM3 479 aa16.36■□□□□ 0.21
PTCH1-218ENST00000548945 MOB2Q70IA6 237 aa16.36■□□□□ 0.21
PTCH1-218ENST00000548945 CTU1Q7Z7A3 348 aaKnown RBP16.36■□□□□ 0.21
PTCH1-218ENST00000548945 CD209Q9NNX6 404 aa16.36■□□□□ 0.21
PTCH1-218ENST00000548945 SCAF8Q9UPN6 1271 aaKnown RBP16.36■□□□□ 0.21
PTCH1-218ENST00000548945 IRS2Q9Y4H2 1338 aa16.36■□□□□ 0.21
PTCH1-218ENST00000548945 SASH1O94885 1247 aa16.35■□□□□ 0.21
PTCH1-218ENST00000548945 TM4SF4P48230 202 aa16.35■□□□□ 0.21
PTCH1-218ENST00000548945 FOXO4P98177 505 aa16.35■□□□□ 0.21
PTCH1-218ENST00000548945 TTLL12Q14166 644 aaPredicted RBP16.35■□□□□ 0.21
PTCH1-218ENST00000548945 BEND3Q5T5X7 828 aa16.35■□□□□ 0.21
PTCH1-218ENST00000548945 ARMC9Q7Z3E5 817 aa16.35■□□□□ 0.21
PTCH1-218ENST00000548945 KIAA0825Q8IV33 1275 aa16.35■□□□□ 0.21
PTCH1-218ENST00000548945 MTMR14Q8NCE2 650 aa16.35■□□□□ 0.21
PTCH1-218ENST00000548945 LAMB1P07942 1786 aa16.34■□□□□ 0.21
PTCH1-218ENST00000548945 FKBP1AP62942 108 aaKnown RBP16.34■□□□□ 0.21
PTCH1-218ENST00000548945 EXOSC9Q06265 439 aaKnown RBP16.34■□□□□ 0.21
PTCH1-218ENST00000548945 PKN2Q16513 984 aaKnown RBP16.34■□□□□ 0.21
PTCH1-218ENST00000548945 IL1R1P14778 569 aa16.33■□□□□ 0.2
PTCH1-218ENST00000548945 SREBF2Q12772 1141 aa16.33■□□□□ 0.2
PTCH1-218ENST00000548945 DLGAP5Q15398 846 aa16.33■□□□□ 0.2
PTCH1-218ENST00000548945 LDLRAD1Q5T700 205 aa16.33■□□□□ 0.2
PTCH1-218ENST00000548945 ZNF804AQ7Z570 1209 aa16.33■□□□□ 0.2
PTCH1-218ENST00000548945 CFHR5Q9BXR6 569 aa16.33■□□□□ 0.2
PTCH1-218ENST00000548945 PPP2R3BQ9Y5P8 575 aa16.33■□□□□ 0.2
PTCH1-218ENST00000548945 ANP32CO43423 234 aa16.32■□□□□ 0.2
PTCH1-218ENST00000548945 CERS5Q8N5B7 392 aa16.32■□□□□ 0.2
PTCH1-218ENST00000548945 UNCXA6NJT0 531 aa16.31■□□□□ 0.2
PTCH1-218ENST00000548945 F6X3S4 739 aa16.31■□□□□ 0.2
PTCH1-218ENST00000548945 GRM8O00222 908 aa16.31■□□□□ 0.2
PTCH1-218ENST00000548945 TAF5LO75529 589 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms