RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 TTLL12Q14166 644 aaPredicted RBP16.58■□□□□ 0.24
SCAF11-208ENST00000546534 NBPF9Q3BBW0 867 aa16.58■□□□□ 0.24
SCAF11-208ENST00000546534 NOM1Q5C9Z4 860 aaKnown RBP16.58■□□□□ 0.24
SCAF11-208ENST00000546534 USP17L1Q7RTZ2 530 aa16.58■□□□□ 0.24
SCAF11-208ENST00000546534 XDHP47989 1333 aa16.57■□□□□ 0.24
SCAF11-208ENST00000546534 CCDC152Q4G0S7 254 aa16.57■□□□□ 0.24
SCAF11-208ENST00000546534 PODNQ7Z5L7 613 aa16.57■□□□□ 0.24
SCAF11-208ENST00000546534 CCDC85AQ96PX6 553 aaPredicted RBP16.57■□□□□ 0.24
SCAF11-208ENST00000546534 R3HDMLQ9H3Y0 253 aa16.57■□□□□ 0.24
SCAF11-208ENST00000546534 TRIM35Q9UPQ4 493 aa16.57■□□□□ 0.24
SCAF11-208ENST00000546534 WTIPA6NIX2 430 aaPredicted RBP16.56■□□□□ 0.24
SCAF11-208ENST00000546534 PITPNM1O00562 1244 aa16.56■□□□□ 0.24
SCAF11-208ENST00000546534 FKTNO75072 461 aa16.56■□□□□ 0.24
SCAF11-208ENST00000546534 HSP90B1P14625 803 aaKnown RBP16.56■□□□□ 0.24
SCAF11-208ENST00000546534 DUSP27Q5VZP5 1158 aa16.56■□□□□ 0.24
SCAF11-208ENST00000546534 RIC3Q7Z5B4 369 aa16.56■□□□□ 0.24
SCAF11-208ENST00000546534 CCDC146Q8IYE0 955 aa16.56■□□□□ 0.24
SCAF11-208ENST00000546534 JARID2Q92833 1246 aaPredicted RBP16.56■□□□□ 0.24
SCAF11-208ENST00000546534 PDE8AO60658 829 aa16.55■□□□□ 0.24
SCAF11-208ENST00000546534 PCCAP05165 728 aaPredicted RBP16.55■□□□□ 0.24
SCAF11-208ENST00000546534 ATP2B4P23634 1241 aa16.55■□□□□ 0.24
SCAF11-208ENST00000546534 PTPN12Q05209 780 aaKnown RBP16.55■□□□□ 0.24
SCAF11-208ENST00000546534 ANKRD18AQ8IVF6 992 aa16.55■□□□□ 0.24
SCAF11-208ENST00000546534 MXD3Q9BW11 206 aa16.55■□□□□ 0.24
SCAF11-208ENST00000546534 CFHR5Q9BXR6 569 aa16.55■□□□□ 0.24
SCAF11-208ENST00000546534 PHAXQ9H814 394 aaKnown RBP16.55■□□□□ 0.24
SCAF11-208ENST00000546534 PSME4Q14997 1843 aa16.54■□□□□ 0.24
SCAF11-208ENST00000546534 WNT10BO00744 389 aa16.54■□□□□ 0.24
SCAF11-208ENST00000546534 NF2P35240 595 aa16.54■□□□□ 0.24
SCAF11-208ENST00000546534 GOLGA2Q08379 1002 aa16.54■□□□□ 0.24
SCAF11-208ENST00000546534 SREBF2Q12772 1141 aa16.54■□□□□ 0.24
SCAF11-208ENST00000546534 GCC1Q96CN9 775 aa16.54■□□□□ 0.24
SCAF11-208ENST00000546534 MYD88Q99836 296 aa16.54■□□□□ 0.24
SCAF11-208ENST00000546534 PRKG1Q13976 671 aa16.53■□□□□ 0.24
SCAF11-208ENST00000546534 DACT2Q5SW24 774 aa16.53■□□□□ 0.24
SCAF11-208ENST00000546534 OGFOD1Q8N543 542 aa16.53■□□□□ 0.24
SCAF11-208ENST00000546534 CCDC191Q8NCU4 936 aa16.53■□□□□ 0.24
SCAF11-208ENST00000546534 HABP4Q5JVS0 413 aaKnown RBP16.52■□□□□ 0.24
SCAF11-208ENST00000546534 ARMC9Q7Z3E5 817 aa16.52■□□□□ 0.24
SCAF11-208ENST00000546534 MED23Q9ULK4 1368 aa16.51■□□□□ 0.23
SCAF11-208ENST00000546534 SASH1O94885 1247 aa16.51■□□□□ 0.23
SCAF11-208ENST00000546534 PRR29P0C7W0 189 aa16.51■□□□□ 0.23
SCAF11-208ENST00000546534 LDLRAD1Q5T700 205 aa16.51■□□□□ 0.23
SCAF11-208ENST00000546534 SPRYD7Q5W111 196 aa16.51■□□□□ 0.23
SCAF11-208ENST00000546534 FBXW7Q969H0 707 aa16.51■□□□□ 0.23
SCAF11-208ENST00000546534 CWC25Q9NXE8 425 aaPredicted RBP16.51■□□□□ 0.23
SCAF11-208ENST00000546534 STRIP1Q5VSL9 837 aa16.5■□□□□ 0.23
SCAF11-208ENST00000546534 RUNDC1Q96C34 613 aa16.5■□□□□ 0.23
SCAF11-208ENST00000546534 MBIPQ9NS73 344 aa16.5■□□□□ 0.23
SCAF11-208ENST00000546534 MINPP1Q9UNW1 487 aa16.5■□□□□ 0.23
SCAF11-208ENST00000546534 MYO3BQ8WXR4 1341 aa16.49■□□□□ 0.23
SCAF11-208ENST00000546534 POTEFA5A3E0 1075 aa16.49■□□□□ 0.23
SCAF11-208ENST00000546534 ALDH1A1P00352 501 aa16.49■□□□□ 0.23
SCAF11-208ENST00000546534 TXNRD3Q86VQ6 643 aa16.49■□□□□ 0.23
SCAF11-208ENST00000546534 CDC5LQ99459 802 aaKnown RBP16.49■□□□□ 0.23
SCAF11-208ENST00000546534 COA1Q9GZY4 146 aa16.49■□□□□ 0.23
SCAF11-208ENST00000546534 BSDC1Q9NW68 430 aaPredicted RBP16.49■□□□□ 0.23
SCAF11-208ENST00000546534 ANGEL1Q9UNK9 670 aaKnown RBP16.49■□□□□ 0.23
SCAF11-208ENST00000546534 FZD1Q9UP38 647 aa16.49■□□□□ 0.23
SCAF11-208ENST00000546534 TRIM17Q9Y577 477 aa16.49■□□□□ 0.23
SCAF11-208ENST00000546534 ELL2O00472 640 aaPredicted RBP16.48■□□□□ 0.23
SCAF11-208ENST00000546534 CCT4P50991 539 aaKnown RBP16.48■□□□□ 0.23
SCAF11-208ENST00000546534 CTSWP56202 376 aa16.48■□□□□ 0.23
SCAF11-208ENST00000546534 RALBP1Q15311 655 aa16.48■□□□□ 0.23
SCAF11-208ENST00000546534 OTOP1Q7RTM1 612 aa16.48■□□□□ 0.23
SCAF11-208ENST00000546534 MIER1Q8N108 512 aa16.48■□□□□ 0.23
SCAF11-208ENST00000546534 METTL22Q9BUU2 404 aaPredicted RBP16.48■□□□□ 0.23
SCAF11-208ENST00000546534 INHBEP58166 350 aa16.47■□□□□ 0.23
SCAF11-208ENST00000546534 IFNL1Q8IU54 200 aa16.47■□□□□ 0.23
SCAF11-208ENST00000546534 APOBEC3FQ8IUX4 373 aaKnown RBP16.47■□□□□ 0.23
SCAF11-208ENST00000546534 KIAA0825Q8IV33 1275 aa16.47■□□□□ 0.23
SCAF11-208ENST00000546534 PLCD3Q8N3E9 789 aa16.47■□□□□ 0.23
SCAF11-208ENST00000546534 TTLL11Q8NHH1 800 aa16.47■□□□□ 0.23
SCAF11-208ENST00000546534 ZBED3Q96IU2 234 aaPredicted RBP16.47■□□□□ 0.23
SCAF11-208ENST00000546534 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.47■□□□□ 0.23
SCAF11-208ENST00000546534 MANSC4A6NHS7 340 aaPredicted RBP16.46■□□□□ 0.23
SCAF11-208ENST00000546534 ZNF853P0CG23 659 aa16.46■□□□□ 0.23
SCAF11-208ENST00000546534 MMP14P50281 582 aa16.46■□□□□ 0.23
SCAF11-208ENST00000546534 INTS3Q68E01 1043 aaKnown RBP16.46■□□□□ 0.23
SCAF11-208ENST00000546534 TTLL5Q6EMB2 1281 aa16.46■□□□□ 0.23
SCAF11-208ENST00000546534 IFNLR1Q8IU57 520 aaPredicted RBP16.46■□□□□ 0.23
SCAF11-208ENST00000546534 SLC10A4Q96EP9 437 aa16.46■□□□□ 0.23
SCAF11-208ENST00000546534 GREM2Q9H772 168 aa16.46■□□□□ 0.23
SCAF11-208ENST00000546534 ZNF646O15015 1829 aaPredicted RBP16.46■□□□□ 0.23
SCAF11-208ENST00000546534 IGF2BP3O00425 579 aaKnown RBP eCLIP16.45■□□□□ 0.22
SCAF11-208ENST00000546534 CLMNQ96JQ2 1002 aa16.45■□□□□ 0.22
SCAF11-208ENST00000546534 IGKV5-2P06315 115 aa16.44■□□□□ 0.22
SCAF11-208ENST00000546534 KLRK1P26718 216 aa16.44■□□□□ 0.22
SCAF11-208ENST00000546534 DEFB129Q9H1M3 183 aa16.44■□□□□ 0.22
SCAF11-208ENST00000546534 MAP3K2Q9Y2U5 619 aa16.44■□□□□ 0.22
SCAF11-208ENST00000546534 LEMD3Q9Y2U8 911 aa16.44■□□□□ 0.22
SCAF11-208ENST00000546534 DDX58O95786 925 aaKnown RBP16.43■□□□□ 0.22
SCAF11-208ENST00000546534 ZBTB48P10074 688 aaPredicted RBP16.43■□□□□ 0.22
SCAF11-208ENST00000546534 GTF2IP78347 998 aa16.43■□□□□ 0.22
SCAF11-208ENST00000546534 WDR43Q15061 677 aaKnown RBP eCLIP16.43■□□□□ 0.22
SCAF11-208ENST00000546534 MAP3K11Q16584 847 aa16.43■□□□□ 0.22
SCAF11-208ENST00000546534 PIP4P2Q8N4L2 257 aa16.43■□□□□ 0.22
SCAF11-208ENST00000546534 WNK4Q96J92 1243 aa16.43■□□□□ 0.22
SCAF11-208ENST00000546534 ADAMTS8Q9UP79 889 aa16.43■□□□□ 0.22
SCAF11-208ENST00000546534 PTPN22Q9Y2R2 807 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms