RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 GOLPH3LQ9H4A5 285 aa17.14■□□□□ 0.33
HOXC11-202ENST00000546378 RPS6KB1P23443 525 aa17.13■□□□□ 0.33
HOXC11-202ENST00000546378 TOB2Q14106 344 aaPredicted RBP17.13■□□□□ 0.33
HOXC11-202ENST00000546378 PTPDC1A2A3K4 754 aa17.13■□□□□ 0.33
HOXC11-202ENST00000546378 SEC31AO94979 1220 aaKnown RBP17.13■□□□□ 0.33
HOXC11-202ENST00000546378 SERPINC1P01008 464 aa17.13■□□□□ 0.33
HOXC11-202ENST00000546378 HINFPQ9BQA5 517 aa17.13■□□□□ 0.33
HOXC11-202ENST00000546378 GRM8O00222 908 aa17.12■□□□□ 0.33
HOXC11-202ENST00000546378 SCRN1Q12765 414 aa17.12■□□□□ 0.33
HOXC11-202ENST00000546378 NECTIN1Q15223 517 aa17.12■□□□□ 0.33
HOXC11-202ENST00000546378 FBXO38Q6PIJ6 1188 aa17.12■□□□□ 0.33
HOXC11-202ENST00000546378 GPIHBP1Q8IV16 184 aa17.12■□□□□ 0.33
HOXC11-202ENST00000546378 FUCA2Q9BTY2 467 aa17.12■□□□□ 0.33
HOXC11-202ENST00000546378 ZCCHC17Q9NP64 241 aaKnown RBP17.12■□□□□ 0.33
HOXC11-202ENST00000546378 CFAP100Q494V2 611 aa17.12■□□□□ 0.33
HOXC11-202ENST00000546378 KMT5BQ4FZB7 885 aa17.12■□□□□ 0.33
HOXC11-202ENST00000546378 PXDNQ92626 1479 aa17.12■□□□□ 0.33
HOXC11-202ENST00000546378 MNS1Q8NEH6 495 aa17.11■□□□□ 0.33
HOXC11-202ENST00000546378 AIFM3Q96NN9 605 aa17.11■□□□□ 0.33
HOXC11-202ENST00000546378 ZBTB3Q9H5J0 574 aa17.11■□□□□ 0.33
HOXC11-202ENST00000546378 CLSTN2Q9H4D0 955 aa17.11■□□□□ 0.33
HOXC11-202ENST00000546378 DBF4Q9UBU7 674 aaPredicted RBP17.11■□□□□ 0.33
HOXC11-202ENST00000546378 CYP21A2P08686 494 aa17.11■□□□□ 0.33
HOXC11-202ENST00000546378 SNW1Q13573 536 aaKnown RBP17.11■□□□□ 0.33
HOXC11-202ENST00000546378 DPCR1Q3MIW9 517 aa17.11■□□□□ 0.33
HOXC11-202ENST00000546378 TEX35Q5T0J7 233 aa17.11■□□□□ 0.33
HOXC11-202ENST00000546378 LRRC8AQ8IWT6 810 aa17.11■□□□□ 0.33
HOXC11-202ENST00000546378 ZNF496Q96IT1 587 aaPredicted RBP17.11■□□□□ 0.33
HOXC11-202ENST00000546378 DLG5Q8TDM6 1919 aa17.11■□□□□ 0.33
HOXC11-202ENST00000546378 STRCQ7RTU9 1775 aa17.11■□□□□ 0.33
HOXC11-202ENST00000546378 A0A087WZG4 1122 aa17.1■□□□□ 0.33
HOXC11-202ENST00000546378 ATP1A3P13637 1013 aa17.1■□□□□ 0.33
HOXC11-202ENST00000546378 IL2RBP14784 551 aa17.1■□□□□ 0.33
HOXC11-202ENST00000546378 ARHGAP29Q52LW3 1261 aa17.1■□□□□ 0.33
HOXC11-202ENST00000546378 CERS3Q8IU89 383 aa17.1■□□□□ 0.33
HOXC11-202ENST00000546378 MYL10Q9BUA6 226 aa17.1■□□□□ 0.33
HOXC11-202ENST00000546378 DDX19AQ9NUU7 478 aaKnown RBP17.1■□□□□ 0.33
HOXC11-202ENST00000546378 SPTLC3Q9NUV7 552 aa17.1■□□□□ 0.33
HOXC11-202ENST00000546378 MED1Q15648 1581 aaPredicted RBP17.1■□□□□ 0.33
HOXC11-202ENST00000546378 SMTNL1A8MU46 457 aa17.09■□□□□ 0.33
HOXC11-202ENST00000546378 RRP12Q5JTH9 1297 aaKnown RBP17.09■□□□□ 0.33
HOXC11-202ENST00000546378 ZNF790Q6PG37 636 aa17.09■□□□□ 0.33
HOXC11-202ENST00000546378 NEK11Q8NG66 645 aa17.09■□□□□ 0.33
HOXC11-202ENST00000546378 WDR17Q8IZU2 1322 aa17.09■□□□□ 0.33
HOXC11-202ENST00000546378 PES1O00541 588 aaKnown RBP17.09■□□□□ 0.33
HOXC11-202ENST00000546378 KLHL10Q6JEL2 608 aa17.09■□□□□ 0.33
HOXC11-202ENST00000546378 CEP57L1Q8IYX8 460 aa17.09■□□□□ 0.33
HOXC11-202ENST00000546378 KIF18AQ8NI77 898 aa17.09■□□□□ 0.33
HOXC11-202ENST00000546378 XPO4Q9C0E2 1151 aaKnown RBP17.09■□□□□ 0.33
HOXC11-202ENST00000546378 LTN1O94822 1766 aa17.09■□□□□ 0.33
HOXC11-202ENST00000546378 PI16Q6UXB8 463 aa17.09■□□□□ 0.33
HOXC11-202ENST00000546378 SLC52A2Q9HAB3 445 aa17.09■□□□□ 0.33
HOXC11-202ENST00000546378 SFPQP23246 707 aaKnown RBP eCLIP17.08■□□□□ 0.33
HOXC11-202ENST00000546378 KARSQ15046 597 aaKnown RBP17.08■□□□□ 0.33
HOXC11-202ENST00000546378 SYNE3Q6ZMZ3 975 aa17.08■□□□□ 0.33
HOXC11-202ENST00000546378 UTP14AQ9BVJ6 771 aaKnown RBP17.08■□□□□ 0.33
HOXC11-202ENST00000546378 TOM1O60784 492 aa17.08■□□□□ 0.32
HOXC11-202ENST00000546378 LMBR1LQ6UX01 489 aa17.08■□□□□ 0.32
HOXC11-202ENST00000546378 DBNLQ9UJU6 430 aaKnown RBP17.08■□□□□ 0.32
HOXC11-202ENST00000546378 GIGYF1O75420 1035 aaPredicted RBP17.08■□□□□ 0.32
HOXC11-202ENST00000546378 ZNF827Q17R98 1081 aa17.08■□□□□ 0.32
HOXC11-202ENST00000546378 MAP4K1Q92918 833 aa17.08■□□□□ 0.32
HOXC11-202ENST00000546378 ANKRD65E5RJM6 399 aa17.07■□□□□ 0.32
HOXC11-202ENST00000546378 CMTR1Q8N1G2 835 aaKnown RBP17.07■□□□□ 0.32
HOXC11-202ENST00000546378 CFAP45Q9UL16 551 aa17.07■□□□□ 0.32
HOXC11-202ENST00000546378 CLIC4Q9Y696 253 aa17.07■□□□□ 0.32
HOXC11-202ENST00000546378 PHACTR2O75167 634 aa17.07■□□□□ 0.32
HOXC11-202ENST00000546378 NDUFA8P51970 172 aa17.07■□□□□ 0.32
HOXC11-202ENST00000546378 TAF7LQ5H9L4 462 aa17.07■□□□□ 0.32
HOXC11-202ENST00000546378 DCAF5Q96JK2 942 aa17.07■□□□□ 0.32
HOXC11-202ENST00000546378 MTMR7Q9Y216 660 aa17.07■□□□□ 0.32
HOXC11-202ENST00000546378 CTNNA3Q9UI47 895 aa17.06■□□□□ 0.32
HOXC11-202ENST00000546378 MEGF6O75095 1541 aa17.06■□□□□ 0.32
HOXC11-202ENST00000546378 POLA2Q14181 598 aa17.06■□□□□ 0.32
HOXC11-202ENST00000546378 STX1AQ16623 288 aa17.06■□□□□ 0.32
HOXC11-202ENST00000546378 DESI2Q9BSY9 194 aa17.06■□□□□ 0.32
HOXC11-202ENST00000546378 DENND2AQ9ULE3 1009 aa17.06■□□□□ 0.32
HOXC11-202ENST00000546378 DDX58O95786 925 aaKnown RBP17.06■□□□□ 0.32
HOXC11-202ENST00000546378 KSR2Q6VAB6 950 aa17.06■□□□□ 0.32
HOXC11-202ENST00000546378 MICU3Q86XE3 530 aa17.06■□□□□ 0.32
HOXC11-202ENST00000546378 INCENPQ9NQS7 918 aa17.06■□□□□ 0.32
HOXC11-202ENST00000546378 OGFRQ9NZT2 677 aa17.06■□□□□ 0.32
HOXC11-202ENST00000546378 UBE2Q2LH0YL09 131 aa17.05■□□□□ 0.32
HOXC11-202ENST00000546378 TAF5LO75529 589 aa17.05■□□□□ 0.32
HOXC11-202ENST00000546378 TPM3P06753 285 aa17.05■□□□□ 0.32
HOXC11-202ENST00000546378 TRMT44Q8IYL2 757 aaKnown RBP17.05■□□□□ 0.32
HOXC11-202ENST00000546378 GOLGA8BA8MQT2 603 aa17.05■□□□□ 0.32
HOXC11-202ENST00000546378 SLC4A8Q2Y0W8 1093 aa17.05■□□□□ 0.32
HOXC11-202ENST00000546378 STOX1Q6ZVD7 989 aa17.05■□□□□ 0.32
HOXC11-202ENST00000546378 KRT222Q8N1A0 295 aa17.05■□□□□ 0.32
HOXC11-202ENST00000546378 PHKBQ93100 1093 aa17.05■□□□□ 0.32
HOXC11-202ENST00000546378 CEMIPQ8WUJ3 1361 aa17.05■□□□□ 0.32
HOXC11-202ENST00000546378 ANKRD1Q15327 319 aa17.04■□□□□ 0.32
HOXC11-202ENST00000546378 LONRF3Q496Y0 759 aa17.04■□□□□ 0.32
HOXC11-202ENST00000546378 NFXL1Q6ZNB6 911 aa17.04■□□□□ 0.32
HOXC11-202ENST00000546378 TMEM87AQ8NBN3 555 aa17.04■□□□□ 0.32
HOXC11-202ENST00000546378 UBXN4Q92575 508 aa17.04■□□□□ 0.32
HOXC11-202ENST00000546378 C8orf37Q96NL8 207 aa17.04■□□□□ 0.32
HOXC11-202ENST00000546378 CLIC6Q96NY7 704 aa17.04■□□□□ 0.32
HOXC11-202ENST00000546378 CARD6Q9BX69 1037 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms