RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 APOBRQ0VD83 1088 aa21.29■■□□□ 1
VIM-209ENST00000544301 DDX11Q96FC9 970 aa21.29■■□□□ 1
VIM-209ENST00000544301 ABCC12Q96J65 1359 aa21.29■■□□□ 1
VIM-209ENST00000544301 HCLS1P14317 486 aaPredicted RBP21.29■■□□□ 1
VIM-209ENST00000544301 RESTQ13127 1097 aa21.29■■□□□ 1
VIM-209ENST00000544301 ATP2B3Q16720 1220 aa21.29■■□□□ 1
VIM-209ENST00000544301 METTL24Q5JXM2 366 aa21.29■■□□□ 1
VIM-209ENST00000544301 TTLL5Q6EMB2 1281 aa21.29■■□□□ 1
VIM-209ENST00000544301 LDHAL6AQ6ZMR3 332 aa21.29■■□□□ 1
VIM-209ENST00000544301 TFIP11Q9UBB9 837 aaKnown RBP21.29■■□□□ 1
VIM-209ENST00000544301 CCDC39Q9UFE4 941 aa21.29■■□□□ 1
VIM-209ENST00000544301 PLCH1Q4KWH8 1693 aa21.28■■□□□ 1
VIM-209ENST00000544301 ANKRD36CQ5JPF3 1778 aa21.28■■□□□ 1
VIM-209ENST00000544301 WASHC4Q2M389 1173 aa21.28■■□□□ 1
VIM-209ENST00000544301 NSUN7Q8NE18 718 aaKnown RBP21.28■■□□□ 1
VIM-209ENST00000544301 SPATA32Q96LK8 384 aa21.28■■□□□ 1
VIM-209ENST00000544301 IRS4O14654 1257 aaPredicted RBP21.28■■□□□ 1
VIM-209ENST00000544301 FOXP2O15409 715 aa21.28■■□□□ 1
VIM-209ENST00000544301 LEO1Q8WVC0 666 aaPredicted RBP21.28■■□□□ 1
VIM-209ENST00000544301 SYTL4Q96C24 671 aaPredicted RBP21.28■■□□□ 1
VIM-209ENST00000544301 NAP1L5Q96NT1 182 aaPredicted RBP21.28■■□□□ 1
VIM-209ENST00000544301 ANKRD18BA2A2Z9 1011 aa21.27■■□□□ 1
VIM-209ENST00000544301 H3BQV1 296 aa21.27■■□□□ 1
VIM-209ENST00000544301 CTDNEP1O95476 244 aa21.27■■□□□ 1
VIM-209ENST00000544301 IFFO2Q5TF58 517 aa21.27■■□□□ 1
VIM-209ENST00000544301 TRMT112Q9UI30 125 aaKnown RBP21.27■■□□□ 1
VIM-209ENST00000544301 LIG1P18858 919 aa21.26■□□□□ 0.99
VIM-209ENST00000544301 PI16Q6UXB8 463 aa21.26■□□□□ 0.99
VIM-209ENST00000544301 CTNNA3Q9UI47 895 aa21.26■□□□□ 0.99
VIM-209ENST00000544301 COL16A1Q07092 1604 aaPredicted RBP21.26■□□□□ 0.99
VIM-209ENST00000544301 ERVV-1B6SEH8 477 aa21.26■□□□□ 0.99
VIM-209ENST00000544301 APPBP2Q92624 585 aa21.26■□□□□ 0.99
VIM-209ENST00000544301 ZSCAN16Q9H4T2 348 aaPredicted RBP21.26■□□□□ 0.99
VIM-209ENST00000544301 ZKSCAN5Q9Y2L8 839 aa21.26■□□□□ 0.99
VIM-209ENST00000544301 KAT6BQ8WYB5 2073 aa21.25■□□□□ 0.99
VIM-209ENST00000544301 CNNM1Q9NRU3 951 aa21.25■□□□□ 0.99
VIM-209ENST00000544301 NWD2Q9ULI1 1742 aa21.25■□□□□ 0.99
VIM-209ENST00000544301 MYH3P11055 1940 aa21.25■□□□□ 0.99
VIM-209ENST00000544301 NUP98P52948 1817 aa21.25■□□□□ 0.99
VIM-209ENST00000544301 PTPDC1A2A3K4 754 aa21.25■□□□□ 0.99
VIM-209ENST00000544301 IL6STP40189 918 aaPredicted RBP21.25■□□□□ 0.99
VIM-209ENST00000544301 CHST3Q7LGC8 479 aa21.25■□□□□ 0.99
VIM-209ENST00000544301 DZIP3Q86Y13 1208 aaKnown RBP21.25■□□□□ 0.99
VIM-209ENST00000544301 VGLL2Q8N8G2 317 aa21.25■□□□□ 0.99
VIM-209ENST00000544301 ZNF274Q96GC6 653 aaPredicted RBP21.25■□□□□ 0.99
VIM-209ENST00000544301 PUS7LQ9H0K6 701 aaKnown RBP21.25■□□□□ 0.99
VIM-209ENST00000544301 TBC1D2BQ9UPU7 963 aa21.25■□□□□ 0.99
VIM-209ENST00000544301 PDE8AO60658 829 aa21.24■□□□□ 0.99
VIM-209ENST00000544301 PDIA3P30101 505 aaKnown RBP21.24■□□□□ 0.99
VIM-209ENST00000544301 MCAMP43121 646 aa21.24■□□□□ 0.99
VIM-209ENST00000544301 CCT2P78371 535 aaKnown RBP21.24■□□□□ 0.99
VIM-209ENST00000544301 HMGN5P82970 282 aaKnown RBP21.24■□□□□ 0.99
VIM-209ENST00000544301 FBXL16Q8N461 479 aa21.24■□□□□ 0.99
VIM-209ENST00000544301 ZNF500O60304 480 aaPredicted RBP21.23■□□□□ 0.99
VIM-209ENST00000544301 FGAP02671 866 aa21.23■□□□□ 0.99
VIM-209ENST00000544301 MCM5P33992 734 aa21.23■□□□□ 0.99
VIM-209ENST00000544301 IMMTQ16891 758 aaKnown RBP21.23■□□□□ 0.99
VIM-209ENST00000544301 NAA16Q6N069 864 aaPredicted RBP21.23■□□□□ 0.99
VIM-209ENST00000544301 ZNF512BQ96KM6 892 aaPredicted RBP21.23■□□□□ 0.99
VIM-209ENST00000544301 NCOA5Q9HCD5 579 aaKnown RBP21.23■□□□□ 0.99
VIM-209ENST00000544301 USP25Q9UHP3 1055 aa21.23■□□□□ 0.99
VIM-209ENST00000544301 COL22A1Q8NFW1 1626 aaPredicted RBP21.23■□□□□ 0.99
VIM-209ENST00000544301 UBN2Q6ZU65 1347 aa21.23■□□□□ 0.99
VIM-209ENST00000544301 GOLGA6L4A6NEF3 574 aa21.23■□□□□ 0.99
VIM-209ENST00000544301 NUP62CLQ9H1M0 184 aa21.23■□□□□ 0.99
VIM-209ENST00000544301 WNK3Q9BYP7 1800 aa21.23■□□□□ 0.99
VIM-209ENST00000544301 AKAP11Q9UKA4 1901 aa21.23■□□□□ 0.99
VIM-209ENST00000544301 SALL1Q9NSC2 1324 aa21.22■□□□□ 0.99
VIM-209ENST00000544301 HAND2P61296 217 aa21.22■□□□□ 0.99
VIM-209ENST00000544301 ZNF34Q8IZ26 560 aa21.22■□□□□ 0.99
VIM-209ENST00000544301 ROBO1Q9Y6N7 1651 aa21.22■□□□□ 0.99
VIM-209ENST00000544301 MYH7P12883 1935 aa21.22■□□□□ 0.99
VIM-209ENST00000544301 PDE8BO95263 885 aa21.22■□□□□ 0.99
VIM-209ENST00000544301 CCDC192P0DO97 292 aa21.22■□□□□ 0.99
VIM-209ENST00000544301 EVCP57679 992 aa21.22■□□□□ 0.99
VIM-209ENST00000544301 PGBD1Q96JS3 809 aa21.22■□□□□ 0.99
VIM-209ENST00000544301 NAP1L2Q9ULW6 460 aaPredicted RBP21.22■□□□□ 0.99
VIM-209ENST00000544301 KIF3AQ9Y496 699 aa21.22■□□□□ 0.99
VIM-209ENST00000544301 GPAA1O43292 621 aa21.21■□□□□ 0.99
VIM-209ENST00000544301 MAP3K11Q16584 847 aa21.21■□□□□ 0.99
VIM-209ENST00000544301 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.21■□□□□ 0.99
VIM-209ENST00000544301 DACT1Q9NYF0 836 aa21.21■□□□□ 0.99
VIM-209ENST00000544301 DOT1LQ8TEK3 1739 aa21.21■□□□□ 0.99
VIM-209ENST00000544301 KDM4AO75164 1064 aa21.2■□□□□ 0.98
VIM-209ENST00000544301 ADCY5O95622 1261 aa21.2■□□□□ 0.98
VIM-209ENST00000544301 PTMAP06454 111 aaKnown RBP21.2■□□□□ 0.98
VIM-209ENST00000544301 CFAP45Q9UL16 551 aa21.2■□□□□ 0.98
VIM-209ENST00000544301 AHDC1Q5TGY3 1603 aaPredicted RBP21.2■□□□□ 0.98
VIM-209ENST00000544301 OFD1O75665 1012 aa21.2■□□□□ 0.98
VIM-209ENST00000544301 ADD1P35611 737 aaKnown RBP21.2■□□□□ 0.98
VIM-209ENST00000544301 ADD2P35612 726 aa21.2■□□□□ 0.98
VIM-209ENST00000544301 CAMK4Q16566 473 aa21.2■□□□□ 0.98
VIM-209ENST00000544301 ZSCAN25Q6NSZ9 544 aa21.2■□□□□ 0.98
VIM-209ENST00000544301 CHMP4CQ96CF2 233 aa21.2■□□□□ 0.98
VIM-209ENST00000544301 GPHNQ9NQX3 736 aaPredicted RBP21.2■□□□□ 0.98
VIM-209ENST00000544301 DDX19AQ9NUU7 478 aaKnown RBP21.2■□□□□ 0.98
VIM-209ENST00000544301 FOSBP53539 338 aa21.19■□□□□ 0.98
VIM-209ENST00000544301 TTF1Q15361 905 aaPredicted RBP21.19■□□□□ 0.98
VIM-209ENST00000544301 MB21D2Q8IYB1 491 aaPredicted RBP21.19■□□□□ 0.98
VIM-209ENST00000544301 SLIT2O94813 1529 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms