RNA–Protein interactions for RNA: ENST00000542541.6

HOMER3-205, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,607 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-205ENST00000542541 C15orf52Q6ZUT6 534 aaKnown RBP28.37■■■□□ 2.13
HOMER3-205ENST00000542541 ZC3H12CQ9C0D7 883 aaKnown RBP28.37■■■□□ 2.13
HOMER3-205ENST00000542541 VPS33BQ9H267 617 aa28.37■■■□□ 2.13
HOMER3-205ENST00000542541 TAOK3Q9H2K8 898 aa28.37■■■□□ 2.13
HOMER3-205ENST00000542541 WTIPA6NIX2 430 aaPredicted RBP28.36■■■□□ 2.13
HOMER3-205ENST00000542541 WASHC4Q2M389 1173 aa28.36■■■□□ 2.13
HOMER3-205ENST00000542541 CAVIN4Q5BKX8 364 aa28.36■■■□□ 2.13
HOMER3-205ENST00000542541 GORABQ5T7V8 394 aa28.36■■■□□ 2.13
HOMER3-205ENST00000542541 ZNF609O15014 1411 aa28.36■■■□□ 2.13
HOMER3-205ENST00000542541 YBX3P16989 372 aaKnown RBP eCLIP28.36■■■□□ 2.13
HOMER3-205ENST00000542541 ARHGAP27Q6ZUM4 889 aa28.36■■■□□ 2.13
HOMER3-205ENST00000542541 XAGE2Q96GT9 111 aa28.36■■■□□ 2.13
HOMER3-205ENST00000542541 CCDC8Q9H0W5 538 aaPredicted RBP28.36■■■□□ 2.13
HOMER3-205ENST00000542541 LTBP3Q9NS15 1303 aa28.35■■■□□ 2.13
HOMER3-205ENST00000542541 GRIN3BO60391 1043 aa28.35■■■□□ 2.13
HOMER3-205ENST00000542541 MED23Q9ULK4 1368 aa28.35■■■□□ 2.13
HOMER3-205ENST00000542541 NFKBIEO00221 500 aa28.32■■■□□ 2.12
HOMER3-205ENST00000542541 CCDC158Q5M9N0 1113 aa28.32■■■□□ 2.12
HOMER3-205ENST00000542541 VPS37DQ86XT2 251 aa28.32■■■□□ 2.12
HOMER3-205ENST00000542541 DBNDD2Q9BQY9 259 aa28.32■■■□□ 2.12
HOMER3-205ENST00000542541 DBNLQ9UJU6 430 aaKnown RBP28.32■■■□□ 2.12
HOMER3-205ENST00000542541 LTBP1Q14766 1721 aa28.32■■■□□ 2.12
HOMER3-205ENST00000542541 RIMBP2O15034 1052 aa28.32■■■□□ 2.12
HOMER3-205ENST00000542541 ZNF804AQ7Z570 1209 aa28.32■■■□□ 2.12
HOMER3-205ENST00000542541 GPATCH3Q96I76 525 aa28.32■■■□□ 2.12
HOMER3-205ENST00000542541 GPR101Q96P66 508 aaPredicted RBP28.32■■■□□ 2.12
HOMER3-205ENST00000542541 A0A1B0GUL6 1792 aa28.31■■■□□ 2.12
HOMER3-205ENST00000542541 DUOX1Q9NRD9 1551 aa28.31■■■□□ 2.12
HOMER3-205ENST00000542541 ADORA1P30542 326 aa28.31■■■□□ 2.12
HOMER3-205ENST00000542541 HIBADHP31937 336 aaKnown RBP28.31■■■□□ 2.12
HOMER3-205ENST00000542541 KIAA2012Q0VF49 1180 aa28.31■■■□□ 2.12
HOMER3-205ENST00000542541 C16orf71Q8IYS4 520 aaPredicted RBP28.31■■■□□ 2.12
HOMER3-205ENST00000542541 FAM84BQ96KN1 310 aaPredicted RBP28.31■■■□□ 2.12
HOMER3-205ENST00000542541 IRS2Q9Y4H2 1338 aa28.31■■■□□ 2.12
HOMER3-205ENST00000542541 DCAF8L1A6NGE4 600 aa28.3■■■□□ 2.12
HOMER3-205ENST00000542541 G3V3G9 751 aa28.3■■■□□ 2.12
HOMER3-205ENST00000542541 PPIP5K2O43314 1243 aa28.3■■■□□ 2.12
HOMER3-205ENST00000542541 KLRK1P26718 216 aa28.3■■■□□ 2.12
HOMER3-205ENST00000542541 DCAF8Q5TAQ9 597 aa28.3■■■□□ 2.12
HOMER3-205ENST00000542541 TXNRD3Q86VQ6 643 aa28.3■■■□□ 2.12
HOMER3-205ENST00000542541 GNL3LQ9NVN8 582 aaKnown RBP28.3■■■□□ 2.12
HOMER3-205ENST00000542541 GYG1P46976 350 aa28.29■■■□□ 2.12
HOMER3-205ENST00000542541 FBXO33Q7Z6M2 555 aa28.29■■■□□ 2.12
HOMER3-205ENST00000542541 ZNF277Q9NRM2 450 aaPredicted RBP28.29■■■□□ 2.12
HOMER3-205ENST00000542541 TLR7Q9NYK1 1049 aaKnown RBP28.29■■■□□ 2.12
HOMER3-205ENST00000542541 IARSP41252 1262 aaKnown RBP28.29■■■□□ 2.12
HOMER3-205ENST00000542541 BCAMP50895 628 aa28.29■■■□□ 2.12
HOMER3-205ENST00000542541 CCDC102BQ68D86 513 aa28.29■■■□□ 2.12
HOMER3-205ENST00000542541 COA1Q9GZY4 146 aa28.29■■■□□ 2.12
HOMER3-205ENST00000542541 AOC3Q16853 763 aa28.28■■■□□ 2.12
HOMER3-205ENST00000542541 LARGE2Q8N3Y3 721 aa28.28■■■□□ 2.12
HOMER3-205ENST00000542541 MX1P20591 662 aa28.27■■■□□ 2.12
HOMER3-205ENST00000542541 TTC39AQ5SRH9 613 aa28.27■■■□□ 2.12
HOMER3-205ENST00000542541 ECHDC1Q9NTX5 307 aa28.27■■■□□ 2.12
HOMER3-205ENST00000542541 FER1L6Q2WGJ9 1857 aa28.27■■■□□ 2.12
HOMER3-205ENST00000542541 UQCRFS1P1P0C7P4 283 aa28.26■■■□□ 2.11
HOMER3-205ENST00000542541 ZNF512BQ96KM6 892 aaPredicted RBP28.26■■■□□ 2.11
HOMER3-205ENST00000542541 TTC41PQ6P2S7 1318 aa28.26■■■□□ 2.11
HOMER3-205ENST00000542541 PHKA1P46020 1223 aa28.25■■■□□ 2.11
HOMER3-205ENST00000542541 RASSF7Q02833 373 aa28.25■■■□□ 2.11
HOMER3-205ENST00000542541 OTUD7AQ8TE49 926 aaPredicted RBP28.25■■■□□ 2.11
HOMER3-205ENST00000542541 PODNQ7Z5L7 613 aa28.25■■■□□ 2.11
HOMER3-205ENST00000542541 JDP2Q8WYK2 163 aa28.25■■■□□ 2.11
HOMER3-205ENST00000542541 CD209Q9NNX6 404 aa28.25■■■□□ 2.11
HOMER3-205ENST00000542541 ERC2O15083 957 aa28.24■■■□□ 2.11
HOMER3-205ENST00000542541 FRAT2O75474 233 aaPredicted RBP28.24■■■□□ 2.11
HOMER3-205ENST00000542541 LMNB1P20700 586 aa28.24■■■□□ 2.11
HOMER3-205ENST00000542541 STAP2Q9UGK3 403 aa28.24■■■□□ 2.11
HOMER3-205ENST00000542541 SALL3Q9BXA9 1300 aa28.24■■■□□ 2.11
HOMER3-205ENST00000542541 SEMA3EO15041 775 aa28.23■■■□□ 2.11
HOMER3-205ENST00000542541 PDE4AP27815 886 aa28.23■■■□□ 2.11
HOMER3-205ENST00000542541 PDE1AP54750 535 aa28.23■■■□□ 2.11
HOMER3-205ENST00000542541 DOK7Q18PE1 504 aa28.23■■■□□ 2.11
HOMER3-205ENST00000542541 PLEKHM2Q8IWE5 1019 aa28.23■■■□□ 2.11
HOMER3-205ENST00000542541 ZBTB22O15209 634 aa28.22■■■□□ 2.11
HOMER3-205ENST00000542541 IL1R1P14778 569 aa28.22■■■□□ 2.11
HOMER3-205ENST00000542541 ATP5JP18859 108 aa28.22■■■□□ 2.11
HOMER3-205ENST00000542541 ARID4AP29374 1257 aaPredicted RBP28.22■■■□□ 2.11
HOMER3-205ENST00000542541 NIM1KQ8IY84 436 aa28.22■■■□□ 2.11
HOMER3-205ENST00000542541 TDRD7Q8NHU6 1098 aaKnown RBP28.22■■■□□ 2.11
HOMER3-205ENST00000542541 OSBPL3Q9H4L5 887 aa28.21■■■□□ 2.11
HOMER3-205ENST00000542541 ARAP2Q8WZ64 1704 aa28.21■■■□□ 2.11
HOMER3-205ENST00000542541 AOX1Q06278 1338 aa28.21■■■□□ 2.11
HOMER3-205ENST00000542541 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.21■■■□□ 2.11
HOMER3-205ENST00000542541 DBNDD1Q9H9R9 158 aa28.21■■■□□ 2.11
HOMER3-205ENST00000542541 ECE2O60344 883 aa28.2■■■□□ 2.1
HOMER3-205ENST00000542541 GLRX3O76003 335 aaKnown RBP28.2■■■□□ 2.1
HOMER3-205ENST00000542541 DENND2AQ9ULE3 1009 aa28.2■■■□□ 2.1
HOMER3-205ENST00000542541 SBF1O95248 1867 aa28.19■■■□□ 2.1
HOMER3-205ENST00000542541 ZNRF3Q9ULT6 936 aa28.19■■■□□ 2.1
HOMER3-205ENST00000542541 IQSEC3Q9UPP2 1182 aaPredicted RBP28.18■■■□□ 2.1
HOMER3-205ENST00000542541 CCDC88AQ3V6T2 1871 aa28.17■■■□□ 2.1
HOMER3-205ENST00000542541 PRELPP51888 382 aa28.17■■■□□ 2.1
HOMER3-205ENST00000542541 RASGRF1Q13972 1273 aa28.17■■■□□ 2.1
HOMER3-205ENST00000542541 TSHZ3Q63HK5 1081 aa28.17■■■□□ 2.1
HOMER3-205ENST00000542541 SPATA5Q8NB90 893 aa28.17■■■□□ 2.1
HOMER3-205ENST00000542541 MCAMP43121 646 aa28.16■■■□□ 2.1
HOMER3-205ENST00000542541 RGS3P49796 1198 aa28.16■■■□□ 2.1
HOMER3-205ENST00000542541 PI4K2BQ8TCG2 481 aa28.16■■■□□ 2.1
HOMER3-205ENST00000542541 BOLA2Q9H3K6 86 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms