RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 LRRFIP1Q32MZ4 808 aaKnown RBP16.39■□□□□ 0.21
RTN3-210ENST00000540798 METTL24Q5JXM2 366 aa16.39■□□□□ 0.21
RTN3-210ENST00000540798 ACSBG1Q96GR2 724 aa16.39■□□□□ 0.21
RTN3-210ENST00000540798 AGXT2Q9BYV1 514 aa16.39■□□□□ 0.21
RTN3-210ENST00000540798 MYO5AQ9Y4I1 1855 aaKnown RBP16.39■□□□□ 0.21
RTN3-210ENST00000540798 HMGB1P09429 215 aaKnown RBP16.39■□□□□ 0.21
RTN3-210ENST00000540798 USP48Q86UV5 1035 aa16.39■□□□□ 0.21
RTN3-210ENST00000540798 OSBP2Q969R2 916 aa16.39■□□□□ 0.21
RTN3-210ENST00000540798 TCEANC2Q96MN5 208 aa16.39■□□□□ 0.21
RTN3-210ENST00000540798 RTL9Q8NET4 1388 aa16.39■□□□□ 0.21
RTN3-210ENST00000540798 FOXP2O15409 715 aa16.39■□□□□ 0.21
RTN3-210ENST00000540798 PIP4K2BP78356 416 aa16.39■□□□□ 0.21
RTN3-210ENST00000540798 SUSD4Q5VX71 490 aa16.39■□□□□ 0.21
RTN3-210ENST00000540798 RBM27Q9P2N5 1060 aaKnown RBP16.39■□□□□ 0.21
RTN3-210ENST00000540798 PDE8BO95263 885 aa16.38■□□□□ 0.21
RTN3-210ENST00000540798 NCLP19338 710 aaKnown RBP16.38■□□□□ 0.21
RTN3-210ENST00000540798 ATP6V1DQ9Y5K8 247 aa16.38■□□□□ 0.21
RTN3-210ENST00000540798 A0A1B0GUL6 1792 aa16.38■□□□□ 0.21
RTN3-210ENST00000540798 BCL9LQ86UU0 1499 aa16.38■□□□□ 0.21
RTN3-210ENST00000540798 ZAP70P43403 619 aa16.38■□□□□ 0.21
RTN3-210ENST00000540798 EXOSC10Q01780 885 aaKnown RBP16.38■□□□□ 0.21
RTN3-210ENST00000540798 GORABQ5T7V8 394 aa16.38■□□□□ 0.21
RTN3-210ENST00000540798 SCN7AQ01118 1682 aa16.37■□□□□ 0.21
RTN3-210ENST00000540798 TOM1O60784 492 aa16.37■□□□□ 0.21
RTN3-210ENST00000540798 FGFR2P21802 821 aa16.37■□□□□ 0.21
RTN3-210ENST00000540798 FKBP4Q02790 459 aaKnown RBP eCLIP16.37■□□□□ 0.21
RTN3-210ENST00000540798 PARP10Q53GL7 1025 aa16.37■□□□□ 0.21
RTN3-210ENST00000540798 GTF3C6Q969F1 213 aa16.37■□□□□ 0.21
RTN3-210ENST00000540798 MCAMP43121 646 aa16.37■□□□□ 0.21
RTN3-210ENST00000540798 Q6ZUG5 572 aa16.37■□□□□ 0.21
RTN3-210ENST00000540798 SMARCC1Q92922 1105 aaPredicted RBP16.37■□□□□ 0.21
RTN3-210ENST00000540798 MROH5Q6ZUA9 1318 aa16.37■□□□□ 0.21
RTN3-210ENST00000540798 NUTM2BA6NNL0 878 aaPredicted RBP16.36■□□□□ 0.21
RTN3-210ENST00000540798 NUTM2EB1AL46 878 aaPredicted RBP16.36■□□□□ 0.21
RTN3-210ENST00000540798 GADD45BO75293 160 aaPredicted RBP16.36■□□□□ 0.21
RTN3-210ENST00000540798 ARID4AP29374 1257 aaPredicted RBP16.36■□□□□ 0.21
RTN3-210ENST00000540798 NUTM2AQ8IVF1 878 aaPredicted RBP16.36■□□□□ 0.21
RTN3-210ENST00000540798 FBXL16Q8N461 479 aa16.36■□□□□ 0.21
RTN3-210ENST00000540798 CNNM1Q9NRU3 951 aa16.36■□□□□ 0.21
RTN3-210ENST00000540798 DHX32Q7L7V1 743 aaKnown RBP16.36■□□□□ 0.21
RTN3-210ENST00000540798 CNPY2Q9Y2B0 182 aa16.36■□□□□ 0.21
RTN3-210ENST00000540798 THSD7AQ9UPZ6 1657 aa16.36■□□□□ 0.21
RTN3-210ENST00000540798 LRSAM1Q6UWE0 723 aa16.36■□□□□ 0.21
RTN3-210ENST00000540798 APPBP2Q92624 585 aa16.36■□□□□ 0.21
RTN3-210ENST00000540798 UTP14AQ9BVJ6 771 aaKnown RBP16.36■□□□□ 0.21
RTN3-210ENST00000540798 E7EWF7 191 aa16.35■□□□□ 0.21
RTN3-210ENST00000540798 NTSR2O95665 410 aa16.35■□□□□ 0.21
RTN3-210ENST00000540798 PDCP20941 246 aa16.35■□□□□ 0.21
RTN3-210ENST00000540798 FAM43AQ8N2R8 423 aa16.35■□□□□ 0.21
RTN3-210ENST00000540798 GDPD2Q9HCC8 539 aa16.35■□□□□ 0.21
RTN3-210ENST00000540798 A0A0G2JLW4 131 aa16.34■□□□□ 0.21
RTN3-210ENST00000540798 VPS72Q15906 364 aa16.34■□□□□ 0.21
RTN3-210ENST00000540798 MYH15Q9Y2K3 1946 aa16.34■□□□□ 0.21
RTN3-210ENST00000540798 PUM3Q15397 648 aaKnown RBP16.34■□□□□ 0.21
RTN3-210ENST00000540798 LARP1BQ659C4 914 aaKnown RBP16.34■□□□□ 0.21
RTN3-210ENST00000540798 PI16Q6UXB8 463 aa16.34■□□□□ 0.21
RTN3-210ENST00000540798 NHSQ6T4R5 1651 aa16.34■□□□□ 0.21
RTN3-210ENST00000540798 RGL2O15211 777 aa16.34■□□□□ 0.21
RTN3-210ENST00000540798 PFKFB2O60825 505 aa16.34■□□□□ 0.21
RTN3-210ENST00000540798 LPIN2Q92539 896 aa16.34■□□□□ 0.21
RTN3-210ENST00000540798 KCNQ2O43526 872 aa16.33■□□□□ 0.21
RTN3-210ENST00000540798 TTF1Q15361 905 aaPredicted RBP16.33■□□□□ 0.21
RTN3-210ENST00000540798 SMARCC2Q8TAQ2 1214 aa16.33■□□□□ 0.21
RTN3-210ENST00000540798 COL4A1P02462 1669 aa16.33■□□□□ 0.2
RTN3-210ENST00000540798 ADD2P35612 726 aa16.33■□□□□ 0.2
RTN3-210ENST00000540798 UBE2HP62256 183 aa16.33■□□□□ 0.2
RTN3-210ENST00000540798 RBM10P98175 930 aaKnown RBP16.33■□□□□ 0.2
RTN3-210ENST00000540798 FOXD4L6Q3SYB3 417 aaPredicted RBP16.33■□□□□ 0.2
RTN3-210ENST00000540798 FOXD4L3Q6VB84 417 aaPredicted RBP16.33■□□□□ 0.2
RTN3-210ENST00000540798 PUS7LQ9H0K6 701 aaKnown RBP16.33■□□□□ 0.2
RTN3-210ENST00000540798 BTAF1O14981 1849 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 NASPP49321 788 aaPredicted RBP16.32■□□□□ 0.2
RTN3-210ENST00000540798 CCDC102BQ68D86 513 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 PPP1R9BQ96SB3 815 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 LLPHQ9BRT6 129 aaKnown RBP16.32■□□□□ 0.2
RTN3-210ENST00000540798 RBSNQ9H1K0 784 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 CTNNA3Q9UI47 895 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 COL24A1Q17RW2 1714 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 DTNBO60941 627 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 UQCRFS1P1P0C7P4 283 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 HCLS1P14317 486 aaPredicted RBP16.32■□□□□ 0.2
RTN3-210ENST00000540798 EVCP57679 992 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 CDC37L1Q7L3B6 337 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 KLHL34Q8N239 644 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 SYAP1Q96A49 352 aaPredicted RBP16.32■□□□□ 0.2
RTN3-210ENST00000540798 ZSCAN25Q6NSZ9 544 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 CLEC4GQ6UXB4 293 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 BRF1Q92994 677 aa16.32■□□□□ 0.2
RTN3-210ENST00000540798 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.32■□□□□ 0.2
RTN3-210ENST00000540798 SYCE3A1L190 88 aa16.31■□□□□ 0.2
RTN3-210ENST00000540798 DNM1Q05193 864 aaKnown RBP16.31■□□□□ 0.2
RTN3-210ENST00000540798 SCRN1Q12765 414 aa16.31■□□□□ 0.2
RTN3-210ENST00000540798 VPS37CA5D8V6 355 aaPredicted RBP16.31■□□□□ 0.2
RTN3-210ENST00000540798 HSP90B1P14625 803 aaKnown RBP16.31■□□□□ 0.2
RTN3-210ENST00000540798 PHKA1P46020 1223 aa16.31■□□□□ 0.2
RTN3-210ENST00000540798 STK3Q13188 491 aa16.31■□□□□ 0.2
RTN3-210ENST00000540798 UBE3CQ15386 1083 aa16.31■□□□□ 0.2
RTN3-210ENST00000540798 CSPP1Q1MSJ5 1256 aa16.31■□□□□ 0.2
RTN3-210ENST00000540798 TTLL5Q6EMB2 1281 aa16.31■□□□□ 0.2
RTN3-210ENST00000540798 PIH1D3Q9NQM4 214 aaKnown RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms