RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CCDC102BQ68D86 513 aa16.22■□□□□ 0.19
USP3-204ENST00000540797 CCDC171Q6TFL3 1326 aa16.22■□□□□ 0.19
USP3-204ENST00000540797 ZBTB7BO15156 539 aaPredicted RBP16.22■□□□□ 0.19
USP3-204ENST00000540797 TBCAO75347 108 aaKnown RBP16.22■□□□□ 0.19
USP3-204ENST00000540797 PHKG2P15735 406 aa16.22■□□□□ 0.19
USP3-204ENST00000540797 RRP36Q96EU6 259 aaKnown RBP16.22■□□□□ 0.19
USP3-204ENST00000540797 TNNI3KQ59H18 835 aa16.21■□□□□ 0.19
USP3-204ENST00000540797 RBM27Q9P2N5 1060 aaKnown RBP16.21■□□□□ 0.19
USP3-204ENST00000540797 FPGT-TNNI3KV9GXZ4 949 aa16.21■□□□□ 0.19
USP3-204ENST00000540797 SFPQP23246 707 aaKnown RBP eCLIP16.21■□□□□ 0.19
USP3-204ENST00000540797 MTIF2P46199 727 aaKnown RBP16.21■□□□□ 0.19
USP3-204ENST00000540797 CCDC40Q4G0X9 1142 aa16.21■□□□□ 0.19
USP3-204ENST00000540797 C6orf50Q9HD87 102 aa16.21■□□□□ 0.19
USP3-204ENST00000540797 MLH3Q9UHC1 1453 aa16.21■□□□□ 0.19
USP3-204ENST00000540797 TCERG1LQ5VWI1 586 aa16.21■□□□□ 0.19
USP3-204ENST00000540797 LARGE2Q8N3Y3 721 aa16.21■□□□□ 0.19
USP3-204ENST00000540797 TMEM87AQ8NBN3 555 aa16.21■□□□□ 0.19
USP3-204ENST00000540797 KLHDC4Q8TBB5 520 aa16.21■□□□□ 0.19
USP3-204ENST00000540797 CETN2P41208 172 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 CHST3Q7LGC8 479 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 XAGE2Q96GT9 111 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 TOP1P11387 765 aaKnown RBP16.2■□□□□ 0.18
USP3-204ENST00000540797 CCDC112Q8NEF3 446 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 SAMD9LQ8IVG5 1584 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 RAD50Q92878 1312 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 B4DLN1 442 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 MRPL12P52815 198 aaKnown RBP16.2■□□□□ 0.18
USP3-204ENST00000540797 GCKRQ14397 625 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 ENOX2Q16206 610 aaKnown RBP16.2■□□□□ 0.18
USP3-204ENST00000540797 JAKMIP3Q5VZ66 844 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 CREB3L3Q68CJ9 461 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 PLEKHM2Q8IWE5 1019 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 TSPOAP1O95153 1857 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 NLRP1Q9C000 1473 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 HELLSQ9NRZ9 838 aa16.2■□□□□ 0.18
USP3-204ENST00000540797 SAP30BPQ9UHR5 308 aaKnown RBP16.2■□□□□ 0.18
USP3-204ENST00000540797 ZSCAN22P10073 491 aaPredicted RBP16.19■□□□□ 0.18
USP3-204ENST00000540797 PRKCSHP14314 528 aaPredicted RBP16.19■□□□□ 0.18
USP3-204ENST00000540797 SUCLG2Q96I99 432 aa16.19■□□□□ 0.18
USP3-204ENST00000540797 TAF5LO75529 589 aa16.19■□□□□ 0.18
USP3-204ENST00000540797 EIF6P56537 245 aaKnown RBP16.19■□□□□ 0.18
USP3-204ENST00000540797 IQCEQ6IPM2 695 aa16.19■□□□□ 0.18
USP3-204ENST00000540797 DBNDD2Q9BQY9 259 aa16.19■□□□□ 0.18
USP3-204ENST00000540797 QTRT2Q9H974 415 aaKnown RBP16.19■□□□□ 0.18
USP3-204ENST00000540797 SPDYE3A6NKU9 549 aa16.19■□□□□ 0.18
USP3-204ENST00000540797 SUPT20HQ8NEM7 779 aa16.19■□□□□ 0.18
USP3-204ENST00000540797 TRPC5Q9UL62 973 aaPredicted RBP16.19■□□□□ 0.18
USP3-204ENST00000540797 NEFHP12036 1026 aa16.18■□□□□ 0.18
USP3-204ENST00000540797 SMC5Q8IY18 1101 aa16.18■□□□□ 0.18
USP3-204ENST00000540797 BICD1Q96G01 975 aa16.18■□□□□ 0.18
USP3-204ENST00000540797 MAST3O60307 1309 aa16.18■□□□□ 0.18
USP3-204ENST00000540797 VTI1AQ96AJ9 217 aa16.18■□□□□ 0.18
USP3-204ENST00000540797 CALML3P27482 149 aa16.18■□□□□ 0.18
USP3-204ENST00000540797 WDR66Q8TBY9 1149 aa16.18■□□□□ 0.18
USP3-204ENST00000540797 CHMLP26374 656 aa16.18■□□□□ 0.18
USP3-204ENST00000540797 NUP88Q99567 741 aaPredicted RBP16.18■□□□□ 0.18
USP3-204ENST00000540797 EXOC1Q9NV70 894 aa16.18■□□□□ 0.18
USP3-204ENST00000540797 STX1AQ16623 288 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 LPIN2Q92539 896 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 SH2D4AQ9H788 454 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 DHX32Q7L7V1 743 aaKnown RBP16.17■□□□□ 0.18
USP3-204ENST00000540797 SYKP43405 635 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 APOBRQ0VD83 1088 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 CHD1O14646 1710 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 INSRP06213 1382 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 ALDH1B1P30837 517 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 TCIRG1Q13488 830 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 TDRD12Q587J7 1177 aaKnown RBP16.17■□□□□ 0.18
USP3-204ENST00000540797 FAM114A1Q8IWE2 563 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 FLAD1Q8NFF5 587 aa16.17■□□□□ 0.18
USP3-204ENST00000540797 UBE2HP62256 183 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 RAB3GAP1Q15042 981 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 KCNG4Q8TDN1 519 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 GOLGA6L10A6NI86 522 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 STAT6P42226 847 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 AXDND1Q5T1B0 1012 aaPredicted RBP16.16■□□□□ 0.18
USP3-204ENST00000540797 CPLX3Q8WVH0 158 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 KIAA0232Q92628 1395 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 ISM2Q6H9L7 571 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 IL17REQ8NFR9 667 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 ARMT1Q9H993 441 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 TTC37Q6PGP7 1564 aa16.16■□□□□ 0.18
USP3-204ENST00000540797 RMND1Q9NWS8 449 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 BRPF3Q9ULD4 1205 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 USP8P40818 1118 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 ZCCHC11Q5TAX3 1644 aaKnown RBP16.15■□□□□ 0.18
USP3-204ENST00000540797 MROH5Q6ZUA9 1318 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 GIGYF1O75420 1035 aaPredicted RBP16.15■□□□□ 0.18
USP3-204ENST00000540797 MSL1Q68DK7 614 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 PICK1Q9NRD5 415 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 SPDYE4A6NLX3 237 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 ECM2O94769 699 aaPredicted RBP16.15■□□□□ 0.18
USP3-204ENST00000540797 YEATS4O95619 227 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 PARP1P09874 1014 aaKnown RBP16.15■□□□□ 0.18
USP3-204ENST00000540797 ZKSCAN3Q9BRR0 538 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 TRIM75PA6NK02 468 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 KCNQ3O43525 872 aa16.15■□□□□ 0.18
USP3-204ENST00000540797 ZSCAN12O43309 604 aa16.14■□□□□ 0.17
USP3-204ENST00000540797 SEPT7Q16181 437 aaKnown RBP16.14■□□□□ 0.17
USP3-204ENST00000540797 CCDC174Q6PII3 467 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 325.4 ms