RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ATP2B2Q01814 1243 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 NEUROD2Q15784 382 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 PDCD2Q16342 344 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-214ENST00000540539 E4F1Q66K89 784 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-214ENST00000540539 TSHZ1Q6ZSZ6 1077 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 IQCA1Q86XH1 822 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 ZBTB10Q96DT7 871 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 CCDC97Q96F63 343 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-214ENST00000540539 FMN2Q9NZ56 1722 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 SMC3Q9UQE7 1217 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 RGPD8O14715 1765 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-214ENST00000540539 ATP7BP35670 1465 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 EIF3JO75822 258 aaKnown RBP10.94□□□□□ -0.66
CLIP1-214ENST00000540539 TMEM57Q8N5G2 664 aa10.94□□□□□ -0.66
CLIP1-214ENST00000540539 TMCO5BA8MYB1 307 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 PYGLP06737 847 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 PECAM1P16284 738 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-214ENST00000540539 CLNS1AP54105 237 aaKnown RBP10.93□□□□□ -0.66
CLIP1-214ENST00000540539 SKIDA1Q1XH10 827 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 NUTM1Q86Y26 1132 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 RPUSD2Q8IZ73 545 aaKnown RBP10.93□□□□□ -0.66
CLIP1-214ENST00000540539 TMTC2Q8N394 836 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 GPR161Q8N6U8 529 aaKnown RBP10.93□□□□□ -0.66
CLIP1-214ENST00000540539 RRP7AQ9Y3A4 280 aaKnown RBP10.93□□□□□ -0.66
CLIP1-214ENST00000540539 CCDC61Q9Y6R9 512 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 FAM169AQ9Y6X4 670 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 USP32Q8NFA0 1604 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 A0A1B0GUA9 196 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 MAP3K11Q16584 847 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 WLSQ5T9L3 541 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 ISM2Q6H9L7 571 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 RINLQ6ZS11 566 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 PARD6BQ9BYG5 372 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 IRX2Q9BZI1 471 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-214ENST00000540539 CABP1Q9NZU7 370 aa10.93□□□□□ -0.66
CLIP1-214ENST00000540539 LTBP4Q8N2S1 1624 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 NEFHP12036 1026 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 RAB27AP51159 221 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 MCM6Q14566 821 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 INTS3Q68E01 1043 aaKnown RBP10.92□□□□□ -0.66
CLIP1-214ENST00000540539 NOL8Q76FK4 1167 aaKnown RBP10.92□□□□□ -0.66
CLIP1-214ENST00000540539 USP16Q9Y5T5 823 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 MSH6P52701 1360 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 PPIP5K1Q6PFW1 1433 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 ATF3P18847 181 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 MAGEA8P43361 318 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 LRRFIP1Q32MZ4 808 aaKnown RBP10.92□□□□□ -0.66
CLIP1-214ENST00000540539 ATF7IPQ6VMQ6 1270 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 KIRREL3Q8IZU9 778 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 C3orf20Q8ND61 904 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 LMCD1Q9NZU5 365 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 PCDHGA4Q9Y5G9 962 aa10.92□□□□□ -0.66
CLIP1-214ENST00000540539 FANCGO15287 622 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 CCP110O43303 1012 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 IBSPP21815 317 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-214ENST00000540539 PEX19P40855 299 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 MCM2P49736 904 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 NAP1L1P55209 391 aaKnown RBP10.91□□□□□ -0.66
CLIP1-214ENST00000540539 GCC1Q96CN9 775 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 CHCHD3Q9NX63 227 aaKnown RBP10.91□□□□□ -0.66
CLIP1-214ENST00000540539 DNAI1Q9UI46 699 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 DCCP43146 1447 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 ANKARQ7Z5J8 1434 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 TOPAZ1Q8N9V7 1692 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 PHLPP2Q6ZVD8 1323 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 ITSN1Q15811 1721 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 MYO1FO00160 1098 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 INPP5BP32019 993 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 PDE6BP35913 854 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 ETF1P62495 437 aaKnown RBP10.91□□□□□ -0.66
CLIP1-214ENST00000540539 ARHGEF1Q92888 912 aaKnown RBP10.91□□□□□ -0.66
CLIP1-214ENST00000540539 TTC41PQ6P2S7 1318 aa10.91□□□□□ -0.66
CLIP1-214ENST00000540539 CCDC151A5D8V7 595 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 URI1O94763 535 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-214ENST00000540539 GNAI3P08754 354 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 GNL2Q13823 731 aaKnown RBP10.9□□□□□ -0.66
CLIP1-214ENST00000540539 CAMK4Q16566 473 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 MRFAP1L1Q96HT8 127 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 CRACR2AQ9BSW2 395 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 RGL2O15211 777 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 POLD1P28340 1107 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 VPS53Q5VIR6 699 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 CDCA2Q69YH5 1023 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-214ENST00000540539 NCAPG2Q86XI2 1143 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 CKAP2LQ8IYA6 745 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 XAGE2Q96GT9 111 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 NUP62CLQ9H1M0 184 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 CAPN7Q9Y6W3 813 aa10.9□□□□□ -0.66
CLIP1-214ENST00000540539 PHACTR2O75167 634 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 PRPHP41219 470 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 CCT5P48643 541 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 FNTAP49354 379 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 ZNF165P49910 485 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 SETDB1Q15047 1291 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 TSPAN18Q96SJ8 248 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 MAF1Q9H063 256 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 ACBD3Q9H3P7 528 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 FAM204AQ9H8W3 233 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 GOPCQ9HD26 462 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 PICK1Q9NRD5 415 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms