RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TRIM35Q9UPQ4 493 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 SEC31AO94979 1220 aaKnown RBP9.89□□□□□ -0.83
YBX3-208ENST00000540447 KRT13P13646 458 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 IDEP14735 1019 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 SESN3P58005 492 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 PPARDQ03181 441 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 AKR1B15C9JRZ8 316 aaPredicted RBP9.89□□□□□ -0.83
YBX3-208ENST00000540447 GMNNO75496 209 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 CCDC122Q5T0U0 273 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 SREK1Q8WXA9 508 aaKnown RBP9.89□□□□□ -0.83
YBX3-208ENST00000540447 LMBRD1Q9NUN5 540 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 TTF2Q9UNY4 1162 aaKnown RBP9.89□□□□□ -0.83
YBX3-208ENST00000540447 ATP1A2P50993 1020 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 C1orf141Q5JVX7 400 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 CXorf38Q8TB03 319 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 CBX8Q9HC52 389 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 SAMM50Q9Y512 469 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 SLMAPQ14BN4 828 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 AACSQ86V21 672 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 SYTL4Q96C24 671 aaPredicted RBP9.88□□□□□ -0.83
YBX3-208ENST00000540447 BICC1Q9H694 974 aaKnown RBP9.88□□□□□ -0.83
YBX3-208ENST00000540447 POLA1P09884 1462 aaPredicted RBP9.88□□□□□ -0.83
YBX3-208ENST00000540447 SLC4A2P04920 1241 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 HDGFP51858 240 aaKnown RBP9.88□□□□□ -0.83
YBX3-208ENST00000540447 HDAC1Q13547 482 aaPredicted RBP9.88□□□□□ -0.83
YBX3-208ENST00000540447 TCP11Q8WWU5 503 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 TSGA10Q9BZW7 698 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 ACTR5Q9H9F9 607 aaPredicted RBP9.88□□□□□ -0.83
YBX3-208ENST00000540447 USP16Q9Y5T5 823 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 HNRNPCP07910 306 aaKnown RBP eCLIP9.88□□□□□ -0.834e-7■□□□□ 9.3
YBX3-208ENST00000540447 HNRNPMP52272 730 aaKnown RBP eCLIP9.88□□□□□ -0.834e-7■■■■■ 27.2
YBX3-208ENST00000540447 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.88□□□□□ -0.83
YBX3-208ENST00000540447 TTC22Q5TAA0 569 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 RIC3Q7Z5B4 369 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 CNGA4Q8IV77 575 aa9.88□□□□□ -0.83
YBX3-208ENST00000540447 NPHP3Q7Z494 1330 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 CTNNA2P26232 953 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 CAPRIN2Q6IMN6 1127 aaKnown RBP9.87□□□□□ -0.83
YBX3-208ENST00000540447 TAOK1Q7L7X3 1001 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 DTNBP1Q96EV8 351 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 GDAP1L1Q96MZ0 367 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 EXOC6BQ9Y2D4 811 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 RTL1A6NKG5 1358 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 TTC36A6NLP5 189 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 PPP1R12AO14974 1030 aaPredicted RBP9.87□□□□□ -0.83
YBX3-208ENST00000540447 IRX4P78413 519 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 GNPTABQ3T906 1256 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 ZNF428Q96B54 188 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 BAZ1AQ9NRL2 1556 aaPredicted RBP9.87□□□□□ -0.83
YBX3-208ENST00000540447 POLR3DP05423 398 aaPredicted RBP9.87□□□□□ -0.83
YBX3-208ENST00000540447 CA8P35219 290 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 PAK2Q13177 524 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 VPS37DQ86XT2 251 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 KCNG4Q8TDN1 519 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 CCDC42Q96M95 316 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 BICDL2A1A5D9 508 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 PCYT1AP49585 367 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 LCA5Q86VQ0 697 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 ANKRD65E5RJM6 399 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 CCDC25Q86WR0 208 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 TEX11Q8IYF3 940 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 SMC1BQ8NDV3 1235 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 Q9H521 79 aa9.87□□□□□ -0.83
YBX3-208ENST00000540447 ARHGAP6O43182 974 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 PLVAPQ9BX97 442 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 TMEM63CQ9P1W3 806 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 PYCARDQ9ULZ3 195 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 ABCC8Q09428 1581 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 ATAD2Q6PL18 1390 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 CROCCP2Q86T23 111 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 TRIM47Q96LD4 638 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 G3V3G9 751 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 DCAF8Q5TAQ9 597 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 TTC19Q6DKK2 380 aaPredicted RBP9.86□□□□□ -0.83
YBX3-208ENST00000540447 CCDC26Q8TAB7 109 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 CHCHD3Q9NX63 227 aaKnown RBP9.86□□□□□ -0.83
YBX3-208ENST00000540447 SPECC1L-ADORA2AF8WAN1 911 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 GLRX3O76003 335 aaKnown RBP9.86□□□□□ -0.83
YBX3-208ENST00000540447 ZFXP17010 805 aaPredicted RBP9.86□□□□□ -0.83
YBX3-208ENST00000540447 PSMD7P51665 324 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 ANKRD24Q8TF21 1146 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 LMBR1Q8WVP7 490 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 PALMDQ9NP74 551 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 ZSCAN20P17040 1043 aaPredicted RBP9.86□□□□□ -0.83
YBX3-208ENST00000540447 CCT2P78371 535 aaKnown RBP9.86□□□□□ -0.83
YBX3-208ENST00000540447 RGS22Q8NE09 1264 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 INTS4Q96HW7 963 aaKnown RBP9.86□□□□□ -0.83
YBX3-208ENST00000540447 NOP53Q9NZM5 478 aaKnown RBP9.86□□□□□ -0.83
YBX3-208ENST00000540447 SCINQ9Y6U3 715 aa9.86□□□□□ -0.83
YBX3-208ENST00000540447 TRAF1Q13077 416 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 TSNARE1Q96NA8 513 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.85□□□□□ -0.83
YBX3-208ENST00000540447 RNF40O75150 1001 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 PRPHP41219 470 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 CFAP157Q5JU67 520 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 CENPKQ9BS16 269 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 U3KPZ7 1027 aaPredicted RBP9.85□□□□□ -0.83
YBX3-208ENST00000540447 ELF1P32519 619 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 CLCN6P51797 869 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 LRMPQ12912 555 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms