RNA–Protein interactions for RNA: ENST00000539680.1

ECHDC2-222, Transcript of enoyl-CoA hydratase domain containing 2, human

Gene ECHDC2, Length 5,817 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC2-222	ENST00000539680	NLRP3	Q96P20	1036 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	NPHP3	Q7Z494	1330 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	GNA11	P29992	359 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	CBX1	P83916	185 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	KRT79	Q5XKE5	535 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	TMX3	Q96JJ7	454 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	CEP83	Q9Y592	693 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	SPDYE3	A6NKU9	549 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	KRT86	O43790	486 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	OGFOD1	Q8N543	542 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	FAM200A	Q8TCP9	573 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ANAPC4	Q9UJX5	808 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	MRVI1	Q9Y6F6	885 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ATP6V1A	P38606	617 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ASIC1	P78348	528 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	GOLGA1	Q92805	767 aa		10.2	□□□□□ -0.78
ECHDC2-222	ENST00000539680	NDC80	O14777	642 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	HAND2	P61296	217 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680		Q6ZUG5	572 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	RBM17	Q96I25	401 aa	Known RBP	10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	TMX1	Q9H3N1	280 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	PAG1	Q9NWQ8	432 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	DISP3	Q9P2K9	1392 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	MRPL50	Q8N5N7	158 aa	Known RBP	10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	GRM8	O00222	908 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	F13A1	P00488	732 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ATP5D	P30049	168 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	TNNI2	P48788	182 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	TICAM2	Q86XR7	235 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ANKRD44	Q8N8A2	993 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	NEK11	Q8NG66	645 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	UHRF1BP1L	A0JNW5	1464 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	TRIM75P	A6NK02	468 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ATP5J2-PTCD1	G3V325	749 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ANO6	Q4KMQ2	910 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	GSTA5	Q7RTV2	222 aa		10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	TFIP11	Q9UBB9	837 aa	Known RBP	10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	RBM8A	Q9Y5S9	174 aa	Known RBP	10.19	□□□□□ -0.78
ECHDC2-222	ENST00000539680	FOXO3	O43524	673 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	GAS8	O95995	478 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	BRF1	Q92994	677 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	HELLS	Q9NRZ9	838 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	SLU7	O95391	586 aa	Known RBP	10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	TUBB2A	Q13885	445 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	TRIM14	Q14142	442 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	CCDC184	Q52MB2	194 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	TUBB2B	Q9BVA1	445 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	MMRN2	Q9H8L6	949 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	CHPF2	Q9P2E5	772 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ABCC1	P33527	1531 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	WDR7	Q9Y4E6	1490 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	MSL1	Q68DK7	614 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ZNF354C	Q86Y25	554 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	KRT222	Q8N1A0	295 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	FBF1	Q8TES7	1133 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	SMC6	Q96SB8	1091 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	MAP3K5	Q99683	1374 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	RPL13	P26373	211 aa	Known RBP	10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	VWA3B	Q502W6	1294 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	C20orf194	Q5TEA3	1177 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	GLT8D2	Q9H1C3	349 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	RIMS2	Q9UQ26	1411 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	MYCN	P04198	464 aa	Predicted RBP	10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	MXRA7	P84157	204 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	CLUL1	Q15846	466 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	MTRF1L	Q9UGC7	380 aa	Known RBP	10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	PARP3	Q9Y6F1	533 aa		10.18	□□□□□ -0.78
ECHDC2-222	ENST00000539680	AFM	P43652	599 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	PDE1A	P54750	535 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	SNX16	P57768	344 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	KIFAP3	Q92845	792 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	SNRK	Q9NRH2	765 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ZNF219	Q9P2Y4	722 aa	Predicted RBP	10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	STX8	Q9UNK0	236 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	SDS	P20132	328 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	KIF5A	Q12840	1032 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	DHX37	Q8IY37	1157 aa	Known RBP	10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ARFGAP3	Q9NP61	516 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	ZNF518A	Q6AHZ1	1483 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	IDI1	Q13907	227 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	CFAP58	Q5T655	872 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	NAP1L3	Q99457	506 aa	Predicted RBP	10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	CSRNP2	Q9H175	543 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	POLR3A	O14802	1390 aa	Predicted RBP	10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	FLT4	P35916	1363 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	SPTLC2	O15270	562 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	TNNC1	P63316	161 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	HS2ST1	Q7LGA3	356 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	DAAM2	Q86T65	1068 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	CCDC117	Q8IWD4	279 aa	Predicted RBP	10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	XAGE3	Q8WTP9	111 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	MTUS1	Q9ULD2	1270 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	PCDH11X	Q9BZA7	1347 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	PCDH11Y	Q9BZA8	1340 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	OTUD6B	Q8N6M0	293 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	DENND2A	Q9ULE3	1009 aa		10.17	□□□□□ -0.78
ECHDC2-222	ENST00000539680	GTF2F1	P35269	517 aa	Known RBP eCLIP	10.16	□□□□□ -0.78
ECHDC2-222	ENST00000539680	MAP3K9	P80192	1104 aa		10.16	□□□□□ -0.78
ECHDC2-222	ENST00000539680	SEL1L2	Q5TEA6	688 aa		10.16	□□□□□ -0.78
ECHDC2-222	ENST00000539680	BABAM1	Q9NWV8	329 aa		10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms