RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 TRIM26Q12899 539 aaPredicted RBP12.13□□□□□ -0.47
USP28-205ENST00000537706 SUPT20HL1Q3ZLR7 823 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 PPP2R3BQ9Y5P8 575 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 LAMB4A4D0S4 1761 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 ANKRD36CQ5JPF3 1778 aa12.12□□□□□ -0.47
USP28-205ENST00000537706 GJB1P08034 283 aa12.12□□□□□ -0.47
USP28-205ENST00000537706 BMP8BP34820 402 aa12.12□□□□□ -0.47
USP28-205ENST00000537706 RPS8P62241 208 aaKnown RBP12.12□□□□□ -0.47
USP28-205ENST00000537706 SF3B3Q15393 1217 aaKnown RBP12.12□□□□□ -0.47
USP28-205ENST00000537706 Q7L0L9 218 aa12.12□□□□□ -0.47
USP28-205ENST00000537706 FBXW7Q969H0 707 aa12.12□□□□□ -0.47
USP28-205ENST00000537706 PHACTR3Q96KR7 559 aa12.12□□□□□ -0.47
USP28-205ENST00000537706 BIN2Q9UBW5 565 aaPredicted RBP12.12□□□□□ -0.47
USP28-205ENST00000537706 KDM3BQ7LBC6 1761 aa12.12□□□□□ -0.47
USP28-205ENST00000537706 LRRC37AA6NMS7 1700 aa12.12□□□□□ -0.47
USP28-205ENST00000537706 SYMPKQ92797 1274 aaKnown RBP12.11□□□□□ -0.47
USP28-205ENST00000537706 NUDCQ9Y266 331 aa12.11□□□□□ -0.47
USP28-205ENST00000537706 RPTORQ8N122 1335 aa12.11□□□□□ -0.47
USP28-205ENST00000537706 LRIT3Q3SXY7 679 aa12.11□□□□□ -0.47
USP28-205ENST00000537706 AMER1Q5JTC6 1135 aaPredicted RBP12.11□□□□□ -0.47
USP28-205ENST00000537706 ANKRD13AQ8IZ07 590 aa12.11□□□□□ -0.47
USP28-205ENST00000537706 RAET1EQ8TD07 263 aa12.11□□□□□ -0.47
USP28-205ENST00000537706 CLMNQ96JQ2 1002 aa12.11□□□□□ -0.47
USP28-205ENST00000537706 TRIM47Q96LD4 638 aa12.11□□□□□ -0.47
USP28-205ENST00000537706 CFAP53Q96M91 514 aa12.11□□□□□ -0.47
USP28-205ENST00000537706 MIS18AQ9NYP9 233 aa12.11□□□□□ -0.47
USP28-205ENST00000537706 SASH1O94885 1247 aa12.1□□□□□ -0.47
USP28-205ENST00000537706 HSP90B1P14625 803 aaKnown RBP12.1□□□□□ -0.47
USP28-205ENST00000537706 UBE2Q1Q7Z7E8 422 aa12.1□□□□□ -0.47
USP28-205ENST00000537706 FAM122AQ96E09 287 aa12.1□□□□□ -0.47
USP28-205ENST00000537706 RNF208Q9H0X6 261 aa12.1□□□□□ -0.47
USP28-205ENST00000537706 NEFMP07197 916 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 CCL5P13501 91 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 ATP2B4P23634 1241 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 GTF2A2P52657 109 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 EIF4A1P60842 406 aaKnown RBP12.09□□□□□ -0.47
USP28-205ENST00000537706 DCTN1Q14203 1278 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 MTFR1Q15390 333 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 RSPH6AQ9H0K4 717 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 GRK4P32298 578 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 HELBQ8NG08 1087 aaPredicted RBP12.09□□□□□ -0.47
USP28-205ENST00000537706 PTPN18Q99952 460 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 DEFB129Q9H1M3 183 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 CUL9Q8IWT3 2517 aa12.09□□□□□ -0.47
USP28-205ENST00000537706 LACTBP83111 547 aaPredicted RBP12.08□□□□□ -0.48
USP28-205ENST00000537706 CAP1Q01518 475 aa12.08□□□□□ -0.48
USP28-205ENST00000537706 CCL15-CCL14A0A0B4J2E2 113 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 MYO1BO43795 1136 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 CCL15Q16663 113 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 OPTNQ96CV9 577 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 THUMPD2Q9BTF0 503 aaKnown RBP12.07□□□□□ -0.48
USP28-205ENST00000537706 XDHP47989 1333 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 PLA2G5P39877 138 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 STRIP1Q5VSL9 837 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 TDHQ8IZJ6 230 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 U2AF1L4Q8WU68 220 aaKnown RBP12.07□□□□□ -0.48
USP28-205ENST00000537706 GDF15Q99988 308 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 FZD1Q9UP38 647 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 LAMB2P55268 1798 aa12.07□□□□□ -0.48
USP28-205ENST00000537706 EIF2S2P20042 333 aaKnown RBP12.06□□□□□ -0.48
USP28-205ENST00000537706 GJA5P36382 358 aa12.06□□□□□ -0.48
USP28-205ENST00000537706 BCAMP50895 628 aa12.06□□□□□ -0.48
USP28-205ENST00000537706 AIMP1Q12904 312 aaKnown RBP12.06□□□□□ -0.48
USP28-205ENST00000537706 DLGAP5Q15398 846 aa12.06□□□□□ -0.48
USP28-205ENST00000537706 CC2D1BQ5T0F9 858 aaKnown RBP12.06□□□□□ -0.48
USP28-205ENST00000537706 ZCCHC17Q9NP64 241 aaKnown RBP12.06□□□□□ -0.48
USP28-205ENST00000537706 SRRDQ9UH36 339 aa12.06□□□□□ -0.48
USP28-205ENST00000537706 RIPOR2Q9Y4F9 1068 aa12.06□□□□□ -0.48
USP28-205ENST00000537706 TLR2O60603 784 aa12.05□□□□□ -0.48
USP28-205ENST00000537706 TFRCP02786 760 aaKnown RBP12.05□□□□□ -0.48
USP28-205ENST00000537706 DACT2Q5SW24 774 aa12.05□□□□□ -0.48
USP28-205ENST00000537706 ELP3Q9H9T3 547 aa12.05□□□□□ -0.48
USP28-205ENST00000537706 FMNL1O95466 1100 aaPredicted RBP12.05□□□□□ -0.48
USP28-205ENST00000537706 SGPL1O95470 568 aa12.05□□□□□ -0.48
USP28-205ENST00000537706 COPS6Q7L5N1 327 aa12.05□□□□□ -0.48
USP28-205ENST00000537706 ARHGAP39Q9C0H5 1083 aa12.05□□□□□ -0.48
USP28-205ENST00000537706 COL3A1P02461 1466 aaPredicted RBP12.05□□□□□ -0.48
USP28-205ENST00000537706 IRS2Q9Y4H2 1338 aa12.05□□□□□ -0.48
USP28-205ENST00000537706 U2AF1L5P0DN76 240 aaPredicted RBP12.04□□□□□ -0.48
USP28-205ENST00000537706 U2AF1Q01081 240 aaKnown RBP eCLIP12.04□□□□□ -0.48
USP28-205ENST00000537706 FAM109BQ6ICB4 259 aaPredicted RBP12.04□□□□□ -0.48
USP28-205ENST00000537706 XAGE3Q8WTP9 111 aa12.04□□□□□ -0.48
USP28-205ENST00000537706 BRI3BPQ8WY22 251 aa12.04□□□□□ -0.48
USP28-205ENST00000537706 FAM89AQ96GI7 184 aa12.04□□□□□ -0.48
USP28-205ENST00000537706 COA1Q9GZY4 146 aa12.04□□□□□ -0.48
USP28-205ENST00000537706 SCN9AQ15858 1988 aa12.04□□□□□ -0.48
USP28-205ENST00000537706 ZNF646O15015 1829 aaPredicted RBP12.04□□□□□ -0.48
USP28-205ENST00000537706 ZNF804BA4D1E1 1349 aa12.04□□□□□ -0.48
USP28-205ENST00000537706 IRS4O14654 1257 aaPredicted RBP12.03□□□□□ -0.48
USP28-205ENST00000537706 CCDC152Q4G0S7 254 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 SLAIN1Q8ND83 568 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 MS4A4AQ96JQ5 239 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 UBE2OQ9C0C9 1292 aaKnown RBP12.03□□□□□ -0.48
USP28-205ENST00000537706 MYPNQ86TC9 1320 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 USP2O75604 605 aaPredicted RBP12.03□□□□□ -0.48
USP28-205ENST00000537706 CETPP11597 493 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 PSMC4P43686 418 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 NECAB2Q7Z6G3 386 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 KIAA0825Q8IV33 1275 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 ANKRD18AQ8IVF6 992 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms