RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ZC3H12CQ9C0D7 883 aaKnown RBP14.73□□□□□ -0.05
CLIP1-208ENST00000537004 ZBTB47Q9UFB7 747 aaPredicted RBP14.73□□□□□ -0.05
CLIP1-208ENST00000537004 ZBTB12Q9Y330 459 aaPredicted RBP14.73□□□□□ -0.05
CLIP1-208ENST00000537004 XDHP47989 1333 aa14.73□□□□□ -0.05
CLIP1-208ENST00000537004 SHTN1A0MZ66 631 aa14.73□□□□□ -0.05
CLIP1-208ENST00000537004 ECE2O60344 883 aa14.73□□□□□ -0.05
CLIP1-208ENST00000537004 CIAPIN1Q6FI81 312 aa14.73□□□□□ -0.05
CLIP1-208ENST00000537004 MPHOSPH8Q99549 860 aa14.73□□□□□ -0.05
CLIP1-208ENST00000537004 ANKRD18BA2A2Z9 1011 aa14.72□□□□□ -0.05
CLIP1-208ENST00000537004 SEC24BO95487 1268 aa14.72□□□□□ -0.05
CLIP1-208ENST00000537004 GMPSP49915 693 aaPredicted RBP14.72□□□□□ -0.05
CLIP1-208ENST00000537004 IFIT5Q13325 482 aaKnown RBP14.72□□□□□ -0.05
CLIP1-208ENST00000537004 HELBQ8NG08 1087 aaPredicted RBP14.72□□□□□ -0.05
CLIP1-208ENST00000537004 EYA3Q99504 573 aa14.72□□□□□ -0.05
CLIP1-208ENST00000537004 USP44Q9H0E7 712 aa14.72□□□□□ -0.05
CLIP1-208ENST00000537004 DCTPP1Q9H773 170 aa14.72□□□□□ -0.05
CLIP1-208ENST00000537004 LTBP1Q14766 1721 aa14.72□□□□□ -0.05
CLIP1-208ENST00000537004 PSMD14O00487 310 aa14.71□□□□□ -0.05
CLIP1-208ENST00000537004 TXNRD3Q86VQ6 643 aa14.71□□□□□ -0.05
CLIP1-208ENST00000537004 BICC1Q9H694 974 aaKnown RBP14.71□□□□□ -0.05
CLIP1-208ENST00000537004 CLEC11AQ9Y240 323 aa14.71□□□□□ -0.05
CLIP1-208ENST00000537004 KLRK1P26718 216 aa14.71□□□□□ -0.05
CLIP1-208ENST00000537004 CHADLQ6NUI6 762 aa14.71□□□□□ -0.05
CLIP1-208ENST00000537004 DDRGK1Q96HY6 314 aa14.71□□□□□ -0.05
CLIP1-208ENST00000537004 UTYO14607 1347 aa14.7□□□□□ -0.06
CLIP1-208ENST00000537004 TAF5LO75529 589 aa14.7□□□□□ -0.06
CLIP1-208ENST00000537004 LMOD1P29536 600 aaPredicted RBP14.7□□□□□ -0.06
CLIP1-208ENST00000537004 CHRNDQ07001 517 aa14.7□□□□□ -0.06
CLIP1-208ENST00000537004 CCDC57Q2TAC2 916 aa14.7□□□□□ -0.06
CLIP1-208ENST00000537004 GPRC5DQ9NZD1 345 aa14.7□□□□□ -0.06
CLIP1-208ENST00000537004 MYH3P11055 1940 aa14.7□□□□□ -0.06
CLIP1-208ENST00000537004 ATP2B4P23634 1241 aa14.7□□□□□ -0.06
CLIP1-208ENST00000537004 TNIP1Q15025 636 aa14.7□□□□□ -0.06
CLIP1-208ENST00000537004 MAP1SQ66K74 1059 aaPredicted RBP14.7□□□□□ -0.06
CLIP1-208ENST00000537004 LDHDQ86WU2 507 aa14.7□□□□□ -0.06
CLIP1-208ENST00000537004 G3V3G9 751 aa14.69□□□□□ -0.06
CLIP1-208ENST00000537004 GNAI2P04899 355 aa14.69□□□□□ -0.06
CLIP1-208ENST00000537004 GNAI3P08754 354 aa14.69□□□□□ -0.06
CLIP1-208ENST00000537004 APLP1P51693 650 aa14.69□□□□□ -0.06
CLIP1-208ENST00000537004 DCAF8Q5TAQ9 597 aa14.69□□□□□ -0.06
CLIP1-208ENST00000537004 TAF7LQ5H9L4 462 aa14.68□□□□□ -0.06
CLIP1-208ENST00000537004 LDHAL6AQ6ZMR3 332 aa14.68□□□□□ -0.06
CLIP1-208ENST00000537004 PNMA8AQ86V59 439 aaPredicted RBP14.68□□□□□ -0.06
CLIP1-208ENST00000537004 PUS3Q9BZE2 481 aaKnown RBP14.68□□□□□ -0.06
CLIP1-208ENST00000537004 HMMRO75330 724 aa14.68□□□□□ -0.06
CLIP1-208ENST00000537004 KLHDC4Q8TBB5 520 aa14.68□□□□□ -0.06
CLIP1-208ENST00000537004 CNOT7Q9UIV1 285 aaKnown RBP14.68□□□□□ -0.06
CLIP1-208ENST00000537004 ZNF804BA4D1E1 1349 aa14.67□□□□□ -0.06
CLIP1-208ENST00000537004 EGFRP00533 1210 aa14.67□□□□□ -0.06
CLIP1-208ENST00000537004 FMR1Q06787 632 aaKnown RBP eCLIP14.67□□□□□ -0.064e-6■■■■□ 21.6
CLIP1-208ENST00000537004 TRPM4Q8TD43 1214 aa14.67□□□□□ -0.06
CLIP1-208ENST00000537004 SCN4AP35499 1836 aa14.67□□□□□ -0.06
CLIP1-208ENST00000537004 SPEF2Q9C093 1822 aa14.67□□□□□ -0.06
CLIP1-208ENST00000537004 ITGBL1O95965 494 aaPredicted RBP14.66□□□□□ -0.06
CLIP1-208ENST00000537004 HIRAP54198 1017 aaPredicted RBP14.66□□□□□ -0.06
CLIP1-208ENST00000537004 RABL6Q3YEC7 729 aaPredicted RBP14.66□□□□□ -0.06
CLIP1-208ENST00000537004 BMP2KLQ5H9B9 411 aa14.66□□□□□ -0.06
CLIP1-208ENST00000537004 MICALL2Q8IY33 904 aa14.66□□□□□ -0.06
CLIP1-208ENST00000537004 CNNM1Q9NRU3 951 aa14.66□□□□□ -0.06
CLIP1-208ENST00000537004 SAMD7Q7Z3H4 446 aa14.66□□□□□ -0.06
CLIP1-208ENST00000537004 CNTROBQ8N137 903 aa14.66□□□□□ -0.06
CLIP1-208ENST00000537004 DNAJC5GQ8N7S2 189 aa14.66□□□□□ -0.06
CLIP1-208ENST00000537004 MXD3Q9BW11 206 aa14.66□□□□□ -0.06
CLIP1-208ENST00000537004 ANKRD2Q9GZV1 360 aa14.66□□□□□ -0.06
CLIP1-208ENST00000537004 UPF2Q9HAU5 1272 aaKnown RBP14.66□□□□□ -0.06
CLIP1-208ENST00000537004 ADARB2Q9NS39 739 aaKnown RBP14.66□□□□□ -0.06
CLIP1-208ENST00000537004 LEMD3Q9Y2U8 911 aa14.66□□□□□ -0.06
CLIP1-208ENST00000537004 MED23Q9ULK4 1368 aa14.65□□□□□ -0.06
CLIP1-208ENST00000537004 VIL1P09327 827 aaKnown RBP14.65□□□□□ -0.06
CLIP1-208ENST00000537004 KCNJ4P48050 445 aa14.65□□□□□ -0.06
CLIP1-208ENST00000537004 LRRC24Q50LG9 513 aa14.65□□□□□ -0.06
CLIP1-208ENST00000537004 USP50Q70EL3 339 aaPredicted RBP14.65□□□□□ -0.06
CLIP1-208ENST00000537004 SCN9AQ15858 1988 aa14.65□□□□□ -0.07
CLIP1-208ENST00000537004 UBTFL1P0CB47 393 aaPredicted RBP14.64□□□□□ -0.07
CLIP1-208ENST00000537004 TBC1D10BQ4KMP7 808 aaPredicted RBP14.64□□□□□ -0.07
CLIP1-208ENST00000537004 RBM26Q5T8P6 1007 aaKnown RBP14.64□□□□□ -0.07
CLIP1-208ENST00000537004 PODNQ7Z5L7 613 aa14.64□□□□□ -0.07
CLIP1-208ENST00000537004 FBXW7Q969H0 707 aa14.64□□□□□ -0.07
CLIP1-208ENST00000537004 LRRFIP2Q9Y608 721 aaKnown RBP14.64□□□□□ -0.07
CLIP1-208ENST00000537004 PASKQ96RG2 1323 aa14.64□□□□□ -0.07
CLIP1-208ENST00000537004 PLEKHM2Q8IWE5 1019 aa14.63□□□□□ -0.07
CLIP1-208ENST00000537004 DPF2Q92785 391 aa14.63□□□□□ -0.07
CLIP1-208ENST00000537004 H7C1D1 291 aa14.63□□□□□ -0.07
CLIP1-208ENST00000537004 TRAF5O00463 557 aa14.63□□□□□ -0.07
CLIP1-208ENST00000537004 DLK2Q6UY11 383 aa14.63□□□□□ -0.07
CLIP1-208ENST00000537004 TBC1D32Q96NH3 1257 aa14.63□□□□□ -0.07
CLIP1-208ENST00000537004 RIPOR2Q9Y4F9 1068 aa14.63□□□□□ -0.07
CLIP1-208ENST00000537004 IRS2Q9Y4H2 1338 aa14.63□□□□□ -0.07
CLIP1-208ENST00000537004 USP17L3A6NCW0 530 aa14.62□□□□□ -0.07
CLIP1-208ENST00000537004 USP17L4A6NCW7 530 aa14.62□□□□□ -0.07
CLIP1-208ENST00000537004 APBB1O00213 710 aa14.62□□□□□ -0.07
CLIP1-208ENST00000537004 ATP8B2P98198 1209 aa14.62□□□□□ -0.07
CLIP1-208ENST00000537004 RSBN1LQ6PCB5 846 aaPredicted RBP14.62□□□□□ -0.07
CLIP1-208ENST00000537004 USP17L1Q7RTZ2 530 aa14.62□□□□□ -0.07
CLIP1-208ENST00000537004 COA1Q9GZY4 146 aa14.62□□□□□ -0.07
CLIP1-208ENST00000537004 ADAMTSL1Q8N6G6 1762 aa14.62□□□□□ -0.07
CLIP1-208ENST00000537004 PNMA6EA0A0J9YXQ4 647 aa14.61□□□□□ -0.07
CLIP1-208ENST00000537004 JAG2Q9Y219 1238 aa14.61□□□□□ -0.07
CLIP1-208ENST00000537004 AK9Q5TCS8 1911 aa14.61□□□□□ -0.07
CLIP1-208ENST00000537004 SMARCA5O60264 1052 aaPredicted RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms